Phylogeography of cliff racer (Platyceps rhodorachis Jan, 1865) from Punjab, Pakistan

Abstract The present study reports the existence of cliff racer, Platyceps rhodorachis from the plains of Punjab, Pakistan. A total of 10 specimens were captured during the field surveys from June to September, 2018 from different sites of Punjab. Platyceps rhodorachis was identify on the basis of morphology and confirmed through COI gene sequences. The obtained DNA sequences have shown reliable and exact species identification. Newly produced DNA sequences of Platyceps rhodorachis were submitted to GenBank and accession numbers were obtained (MK936174.1, MK941839.1 and MT790210.1). N-J tree based on COI sequences of Platyceps rhodorachis clearly separated as out-group with other members of family Colubridae based on p-distance. The intra-specific genetic variation ranges from 12% to 18%. The DNA sequences of Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis and Platyceps ventromaculatus indusai are not available at NCBI to validate their taxonomic positions. In our recommendations, a large scale molecular based identification of Pakistans herpetofauna is required to report more new or subspecies from country.

Resumo O presente estudo relata a existência de um corredor de penhasco, Platyceps rhodorachis, das planícies de Punjab, Paquistão. Um total de 10 espécimes foi capturado durante os levantamentos de campo de junho a setembro de 2018 em diferentes locais de Punjab. Platyceps rhodorachis foi identificada com base na morfologia e confirmada por meio de sequências do gene COI. As sequências de DNA obtidas mostraram identificação de espécies confiável e exata. Sequências de DNA de Platyceps rhodorachis recém-produzidas foram submetidas ao GenBank e os números de acesso foram obtidos (MK936174.1, MK941839.1 e MT790210.1). Árvore N-J baseada em sequências COI de Platyceps rhodorachis claramente separadas como out-group com outros membros da família Colubridae com base na distância-p. A variação genética intraespecífica varia de 12% a 18%. As sequências de DNA de Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis e Platyceps ventromaculatus indusai não estão disponíveis no NCBI para validar suas posições taxonômicas. Em nossas recomendações, uma identificação de base molecular em grande escala da herpetofauna do Paquistão é necessária para relatar mais novas ou subespécies do país.

Phylogeography of cliff racer (Platyceps rhodorachis Jan, 1865) from Punjab, Pakistan / Filografia de penhasco (Platyceps rhodorachis Jan, 1865) de Punjab, Paquistão

The present study reports the existence of cliff racer, Platyceps rhodorachis from the plains of Punjab, Pakistan. A total of 10 specimens were captured during the field surveys from June to September, 2018 from different sites of Punjab. Platyceps rhodorachis was identify on the basis of morphology and confirmed through COI gene sequences. The obtained DNA sequences have shown reliable and exact species identification. Newly produced DNA sequences of Platyceps rhodorachis were submitted to GenBank and accession numbers were obtained (MK936174.1, MK941839.1 and MT790210.1). N-J tree based on COI sequences of Platyceps rhodorachis clearly separated as out-group with other members of family Colubridae based on p-distance. The intra-specific genetic variation ranges from 12% to 18%. The DNA sequences of Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis and Platyceps ventromaculatus indusai are not available at NCBI to validate their taxonomic positions. In our recommendations, a large scale molecular based identification of Pakistan’s herpetofauna is required to report more new or subspecies from country.

O presente estudo relata a existência de um corredor de penhasco, Platyceps rhodorachis, das planícies de Punjab, Paquistão. Um total de 10 espécimes foi capturado durante os levantamentos de campo de junho a setembro de 2018 em diferentes locais de Punjab. Platyceps rhodorachis foi identificada com base na morfologia e confirmada por meio de sequências do gene COI. As sequências de DNA obtidas mostraram identificação de espécies confiável e exata. Sequências de DNA de Platyceps rhodorachis recém-produzidas foram submetidas ao GenBank e os números de acesso foram obtidos (MK936174.1, MK941839.1 e MT790210.1). Árvore N-J baseada em sequências COI de Platyceps rhodorachis claramente separadas como out-group com outros membros da família Colubridae com base na distância-p. A variação genética intraespecífica varia de 12% a 18%. As sequências de DNA de Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis e Platyceps ventromaculatus indusai não estão disponíveis no NCBI para validar suas posições taxonômicas. Em nossas recomendações, uma identificação de base molecular em grande escala da herpetofauna do Paquistão é necessária para relatar mais novas ou subespécies do país.

Phylogeography of cliff racer (Platyceps rhodorachis Jan, 1865) from Punjab, Pakistan / Filografia de penhasco (Platyceps rhodorachis Jan, 1865) de Punjab, Paquistão

The present study reports the existence of cliff racer, Platyceps rhodorachis from the plains of Punjab, Pakistan. A total of 10 specimens were captured during the field surveys from June to September, 2018 from different sites of Punjab. Platyceps rhodorachis was identify on the basis of morphology and confirmed through COI gene sequences. The obtained DNA sequences have shown reliable and exact species identification. Newly produced DNA sequences of Platyceps rhodorachis were submitted to GenBank and accession numbers were obtained (MK936174.1, MK941839.1 and MT790210.1). N-J tree based on COI sequences of Platyceps rhodorachis clearly separated as out-group with other members of family Colubridae based on p-distance. The intra-specific genetic variation ranges from 12% to 18%. The DNA sequences of Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis and Platyceps ventromaculatus indusai are not available at NCBI to validate their taxonomic positions. In our recommendations, a large scale molecular based identification of Pakistans herpetofauna is required to report more new or subspecies from country.(AU)

O presente estudo relata a existência de um corredor de penhasco, Platyceps rhodorachis, das planícies de Punjab, Paquistão. Um total de 10 espécimes foi capturado durante os levantamentos de campo de junho a setembro de 2018 em diferentes locais de Punjab. Platyceps rhodorachis foi identificada com base na morfologia e confirmada por meio de sequências do gene COI. As sequências de DNA obtidas mostraram identificação de espécies confiável e exata. Sequências de DNA de Platyceps rhodorachis recém-produzidas foram submetidas ao GenBank e os números de acesso foram obtidos (MK936174.1, MK941839.1 e MT790210.1). Árvore N-J baseada em sequências COI de Platyceps rhodorachis claramente separadas como out-group com outros membros da família Colubridae com base na distância-p. A variação genética intraespecífica varia de 12% a 18%. As sequências de DNA de Platyceps rhodorachis kashmirensis, Platyceps rhodorachis ladacensis, Platyceps ventromaculatus, Platyceps ventromaculatus bengalensis e Platyceps ventromaculatus indusai não estão disponíveis no NCBI para validar suas posições taxonômicas. Em nossas recomendações, uma identificação de base molecular em grande escala da herpetofauna do Paquistão é necessária para relatar mais novas ou subespécies do país.(AU)

A three-year Herpetofauna survey from one of the largest remnants of the Atlantic Rainforest Biome (Reserva Natural Vale)

Here we present a three-year survey of amphibian and reptile species registered in the Vale Natural Reserve (VNR), located in the north of Espírito Santo, southeastern Brazil. The VNR, along with the Sooretama Biological Reserve (SBR) and other surrounding areas, form a forest block that constitutes one of the largest remnants of continuous forest in the Atlantic Forest biome. We systematically sampled the herpetofauna community from 2015 to 2018, using the method of active search method in 27 plots of RAPELD distributed in the different types of vegetation present in the area. We recorded 39 species of amphibians belonging to the order Anura, distributed in seven families and 40 species of reptiles belonging to 20 families distributed in three orders: Crocodylia, Testudines and Squamata. The supplementation the samplings with those records from occasional encounters was important for the survey of the region's herpetofauna, mainly for reptiles. We added four species (two lizards, one amphisbaenid and one snake) to the known list for the VNR-SBR forest block: Micrablepharus maximiliani, Strobilurus torquatus, Amphisbaena alba and Tantilla sp. We demonstrated that VNR contains a high species richness of amphibians and reptiles, with a high number of anurans being endemic to the Atlantic Forest biome. The present species inventory provided the most current approximation of known the richness and composition of species of the existing herpetofauna at Vale Natural Reserve, since the period of the gathering of records is quite recent (2015-2018). Also, it brings the knowledge of some community parameters as species richness and composition not only for the whole area of the Vale Natural Reserve, but also for its different vegetation types, with no inclusion of environments outside this reserve. Furthermore, the presence of threatened species, the addition of four species to the current list, and the potential for new species to occur, reinforce the role of VNR as an important area for the protection of amphibian and reptile biodiversity in the Atlantic Forest.(AU)

Amphibians and reptiles from a protected area in western Brazilian Amazonia (Reserva Extrativista do Baixo Juruá)

Sampling gaps across the logistically challenging and extremely biodiverse Amazonia largely hamper our understanding of broad-scale amphibian and reptile diversity patterns in this ecosystem. The Juruá River basin, a southwestern tributary of the Amazon River, is one of these undersampled areas, with only punctual information documented for these vertebrates that are spatially or temporally biased. This is especially the case for the lower-middle courses of the Juruá River, which also has comparatively less protected areas than its upper course. In order to fill some biodiversity knowledge gaps associated with amphibians and reptiles in this river basin, we combined results of our field expeditions carried out in 1992, 2005-2007, and 2018 to the Reserva Extrativista (Extractive Reserve) do Baixo Juruá, a Brazilian protected area in the right bank of the lower Juruá River. Amphibians and reptiles were sampled using four complementary methods: active surveys, pitfall traps, funnel traps, and trammel nets. We identified species or updated their taxonomic status with a reanalysis of the external morphology of the preserved material in the light of novel taxonomic literature (more than 1,500 specimens) and employment of DNA barcoding analyses for some newly collected specimens with contentious taxonomic status. Our combined sampling evidenced 149 species of amphibians and reptiles occurring in this protected area (72 amphibians, 68 squamates, six chelonians, and three crocodilians). Recorded species highlight the value of the lower Juruá River region as harboring quite diverse assemblages for these vertebrates, with species typical of the western and southwestern Amazonia sub-regions. Remarkable species records are presented, as well as accounts on species with lower taxonomic resolution. Furthermore, we discuss the biogeographic affinities of recorded assemblages based on the species geographic range and preferred habitats, and the value of this protected area to preserve the regional biological diversity.(AU)

Overview of roadkills in the Serra da Macaca Park Road (SP-139), state of São Paulo, Brazil

ABSTRACT Fatalities involving wildlife on roads and highways due to collisions with automotive vehicles represent a severe threat to the conservation of several species of terrestrial vertebrates throughout the world. However, in addition to the negative impact caused by collisions, there are also serious social and economic implications that arise from this situation. This study aims at qualifying and quantifying the collisions with fauna in the Serra da Macaca Park Road (SP-139), since the end of the revitalization work that the road was underwent - in 2015 - over a stretch of 33 km that crosses the Parque Estadual Carlos Botelho (PECB), as well as identifying the predisposing factors that lead to such accidents. The ecological analyses were generated by a combination of the records kept by the fiscalization service of the Fundação Florestal and samples collected in the field. In total, the loss of 80 individuals belonging to 27 species was recorded over an estimated period of three years. Reptiles were the most affected group, followed by mammals. A significant part of the animals was unable to be recognized to the species level, since the taxonomic identification was conducted based on the morphology of the external characteristics and several of the carcasses were completely dilacerated. We identified that the temporal variations in the fatalities are related mainly to the intensity of the traffic in the road and to the differential response of herpetofauna to the stimuli of seasonality.

RESUMO Breve panorama dos atropelamentos de fauna na Estrada Parque Serra da Macaca (SP-139), estado de São Paulo, Brasil. As fatalidades de animais silvestres nas rodovias, decorrentes de colisões com veículos automotores, constitui grave ameaça à conservação de diversas espécies de vertebrados terrestres em todo o mundo. Entretanto, além do impacto negativo causado pelos atropelamentos, existem também implicações socioeconômicas muito sérias advindas desse tipo de conflito. O presente estudo teve como objetivo qualificar e quantificar os atropelamentos de fauna ocorridos na Estrada Parque Serra da Macaca (SP-139), desde a conclusão das suas obras de revitalização - no ano de 2015 - em um trecho de 33 km que atravessa o Parque Estadual Carlos Botelho (PECB), assim como delimitar localmente os principais fatores predisponentes. As análises ecológicas foram geradas pela combinação dos registros catalogados pelo serviço de fiscalização da Fundação Florestal com as amostras coletadas em campo. Na contagem total, detectou-se a perda de 80 indivíduos pertencentes a 27 espécies, em um período aproximado de três anos. O grupo dos répteis foi o mais afetado, seguido pelos mamíferos. Uma parte significativa dos animais não pôde ser reconhecida ao nível de espécie, visto que a identificação foi realizada com base na morfologia dos caracteres externos e muitas das carcaças estavam dilaceradas. Constatou-se que as variações temporais das fatalidades estão ligadas principalmente à intensidade de tráfego na via, e à resposta diferencial da herpetofauna aos estímulos da sazonalidade.

A summary of reptile and anuran amphibian species from Brazilian sandy coastal plains: 31 years of sampling efforts of the Laboratório de Ecologia de Vertebrados, Universidade do Estado do Rio de Janeiro / Um resumo das espécies de répteis e anfíbios anuros das planícies costeiras arenosas brasileiras: 31 anos de esforços de amostragem do Laboratório de Ecologia de Vertebrados da Universidade do Estado do Rio de Janeiro

Although currently there is already a set of studies regarding ecological aspects of some particular reptile and amphibian species living in Brazilian sandy coastal plains (including the so-called restinga and campo nativo habitats), there is comparatively few information on the species composition usually associated to these environments. During 31 years (1988-2019) of herpetological studies carried out in sandy coastal plains environments by our research team of the Laboratory of Vertebrate Ecology (Department of Ecology, Universidade do Estado do Rio de Janeiro, in Rio de Janeiro Brazil) we have surveyed reptile and amphibian communities and performed different studies with similar methods in 70 sites from 10 different states along the Brazilian coast. Our surveys resulted in records of 87 species of reptile (five turtles, two crocodylians, six amphisbaenians, 36 lizards and 39 snakes) from 24 families, and 77 species of anuran amphibians from nine families. We have studied multiple natural history topics for anurans and reptiles which resulted in the publication of some specific ecological studies, especially regarding some species, encompassing population and community ecology, foraging and feeding habits, species activity, thermoregulation, reproduction, use of microhabitats, and parasitism by ecto and endoparasites. Our results along these three decades have also contributed for the description of four new lizard species (Ameivula nativo, Glaucomastix littoralis, G. abaetensis and G. itabaianensis). Our studies constitute an important contribution to the knowledge of the ecology of anuran amphibians and reptiles in these ecosystems, as well as to the conservation of sandy coastal plains environment. The checklist presented in this study, based on our records of sandy coastal plains herpetofauna, provides for many localities along the Brazilian coast, the needed knowledge on species occurrence, including the presence of endemic and/or endangered species, which can be of value for many conservation actions.(AU)

Embora atualmente exista um conjunto de estudos sobre aspectos ecológicos de algumas espécies de répteis e de anfíbios que ocorrem nas planícies costeiras arenosas brasileiras (incluindo os chamados habitats de restinga e de campo nativo), há relativamente poucas informações sobre a composição de espécies geralmente associada a esses ambientes. Durante 31 anos (1988-2019) de estudos herpetológicos realizados em restingas por nossa equipe de pesquisa do Laboratório de Ecologia de Vertebrados (Departamento de Ecologia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brasil) nós estudamos comunidades de répteis e de anfíbios e realizamos diferentes estudos com métodos semelhantes em 70 localidades de dez diferentes Estados ao longo da costa brasileira. Nossas pesquisas resultaram em registros de 87 espécies de répteis (cinco tartarugas, dois crocodilianos, seis anfisbênios, 36 lagartos e 39 serpentes) de 24 famílias, e 77 espécies de anfíbios anuros de nove famílias. Estudamos vários tópicos de história natural sobre anuros e répteis, que resultaram na publicação de alguns estudos ecológicos específicos, especialmente em relação a algumas espécies, abrangendo ecologia populacional e de comunidades, forrageamento e dieta, horário de atividade de espécies, termorregulação, reprodução, uso do microhabitat e parasitismo por ecto e endoparasitas. Nossos resultados ao longo dessas três décadas também contribuíram para a descrição de quatro novas espécies de lagartos (Ameivula nativo, Glaucomastix littoralis, G. abaetensis e G. itabaianensis). Nossos estudos constituem uma importante contribuição para o conhecimento da ecologia de répteis e de anfíbios anuros nesses ecossistemas, bem como para a conservação dos ecossistemas de restinga. A lista de espécies apresentada neste estudo, com base em nossos registros de herpetofauna das planícies costeiras arenosas, fornece para muitas localidades ao longo da costa brasileira o conhecimento necessário sobre a ocorrência de espécies, incluindo a presença de espécies endêmicas e/ ou ameaçadas de extinção, que podem ser úteis para muitas ações de conservação.(AU)

Yeast microbiota of free-ranging amphibians and reptiles from Caatinga biome in Ceará State, Northeast Brazil: High pathogenic potential of Candida famata / Leveduras da microbiota de anfíbios e répteis do bioma Caatinga no Ceará, Nordeste do Brasil: alto potencial patogênico de Candida famata

Studies on the fungal microbiota of reptiles and amphibians are necessary to better understand of host-microbe interactions and the establishment of fungal disease in these animals. However, these studies are limited. The present researchidentified yeasts from free-ranging reptiles and amphibians from the Caatinga biome andevaluated the virulence factors production, the antifungal susceptibility in planktonic and biofilm growth and the pathogenicity of Candida famata isolates. Twenty-nine isolates of the genera Candida, Cryptococcus and Rhodotorula were identified by phenotypic and/or molecular methods and production of hydrolytic enzymes in vitro by these genera of fungi was evaluated. In addition, susceptibility of planktonic cells and biofilms to azoles and amphotericin B was evaluated. The pathogenicity of C. famata, the most prevalent yeast species isolated, was evaluated using Caenorhabditis elegans model. C. famata was the most prevalent yeast in amphibian and reptilian microbiota. Phospholipase and protease production was observed in 18/29 and 11/29 of the yeast isolates, respectively, while 100% formed biofilms. Itraconazole presented high minimal inhibitory concentrations against C. famata and C. tropicalis. Amphotericin B reduced the biomass and metabolic activity of biofilms. C. famata induced the mortality of C. elegans. In conclusion, reptiles and amphibians are colonized by yeasts capable of producing important virulence factors, especially by Candida spp. that present low susceptibility to azoles which may result from imbalances in ecosystem. Finally, C. famata isolated from these animals presented high pathogenicity, showing the importance of the study of reptile and amphibians fungal microbiota.(AU)

Estudos sobre a microbiota fúngica de répteis e anfíbios são necessários para melhor compreender as interações hospedeiro-microrganismo e o estabelecimento de doenças fúngicas nesses animais. No entanto, esses estudos são limitados. O objetivo da presente pesquisa foi identificar leveduras isoladas de répteis e anfíbios do bioma Caatinga e avaliar a produção de fatores de virulência, a sensibilidade a antifúngicos no crescimento planctônico e de biofilme e a patogenicidade de Candida famata. Vinte e nove isolados dos gêneros Candida, Cryptococcus e Rhodotorula foram identificados por métodos fenotípicos e/ou moleculares e a produção de enzimas hidrolíticas in vitro por esses gêneros de fungos foi avaliada. Além disso, foi avaliada a suscetibilidade de células planctônicas e biofilmes a azólicos e anfotericina B. A patogenicidade de C. famata, a espécie de levedura isolada mais prevalente, foi avaliada usando Caenorhabditis elegans. C. famata foi a levedura mais prevalente na microbiota de anfíbios e répteis. A produção de fosfolipase e protease foi observada em 18/29 e 11/29 dos isolados de levedura, respectivamente, enquanto 100% formaram biofilmes. O itraconazol apresentou altas concentrações inibitórias mínimas contra C. famata e C. tropicalis. A anfotericina B reduziu a biomassa e atividade metabólica dos biofilmes. C. famata induziu a mortalidade de C. elegans. Em conclusão, répteis e anfíbios são colonizados por leveduras capazes de produzir importantes fatores de virulência, especialmente por cepas de Candida spp. que apresentam baixa suscetibilidade a azólicos que podem resultar de desequilíbrio no ecossistema. Por fim, C. famata isolados desses animais apresentaram alta patogenicidade, mostrando a importância do estudo da microbiota fúngica de répteis e anfíbios.(AU)

Overview of roadkills in the Serra da Macaca Park Road (SP-139), state of São Paulo, Brazil / Breve panorama dos atropelamentos de fauna na Estrada Parque Serra da Macaca (SP-139), estado de São Paulo, Brasil

Fatalities involving wildlife on roads and highways due to collisions with automotive vehicles represent a severe threat to the conservation of several species of terrestrial vertebrates throughout the world. However, in addition to the negative impact caused by collisions, there are also serious social and economic implications that arise from this situation. This study aims at qualifying and quantifying the collisions with fauna in the Serra da Macaca Park Road (SP-139), since the end of the revitalization work that the road was underwent in 2015 over a stretch of 33 km that crosses the Parque Estadual Carlos Botelho (PECB), as well as identifying the predisposing factors that lead to such accidents. The ecological analyses were generated by a combination of the records kept by the fiscalization service of the Fundação Florestal and samples collected in the field. In total, the loss of 80 individuals belonging to 27 species was recorded over an estimated period of three years. Reptiles were the most affected group, followed by mammals. A significant part of the animals was unable to be recognized to the species level, since the taxonomic identification was conducted based on the morphology of the external characteristics and several of the carcasses were completely dilacerated. We identified that the temporal variations in the fatalities are related mainly to the intensity of the traffic in the road and to the differential response of herpetofauna to the stimuli of seasonality.(AU)

As fatalidades de animais silvestres nas rodovias, decorrentes de colisões com veículos automotores, constitui grave ameaça à conservação de diversas espécies de vertebrados terrestres em todo o mundo. Entretanto, além do impacto negativo causado pelos atropelamentos, existem também implicações socioeconômicas muito sérias advindas desse tipo de conflito. O presente estudo teve como objetivo qualificar e quantificar os atropelamentos de fauna ocorridos na Estrada Parque Serra da Macaca (SP-139), desde a conclusão das suas obras de revitalização no ano de 2015 em um trecho de 33 km que atravessa o Parque Estadual Carlos Botelho (PECB), assim como delimitar localmente os principais fatores predisponentes. As análises ecológicas foram geradas pela combinação dos registros catalogados pelo serviço de fiscalização da Fundação Florestal com as amostras coletadas em campo. Na contagem total, detectou-se a perda de 80 indivíduos pertencentes a 27 espécies, em um período aproximado de três anos. O grupo dos répteis foi o mais afetado, seguido pelos mamíferos. Uma parte significativa dos animais não pôde ser reconhecida ao nível de espécie, visto que a identificação foi realizada com base na morfologia dos caracteres externos e muitas das carcaças estavam dilaceradas. Constatou-se que as variações temporais das fatalidades estão ligadas principalmente à intensidade de tráfego na via, e à resposta diferencial da herpetofauna aos estímulos da sazonalidade.(AU)

Overview of roadkills in the Serra da Macaca Park Road (SP-139), state of São Paulo, Brazil / Breve panorama dos atropelamentos de fauna na Estrada Parque Serra da Macaca (SP-139), estado de São Paulo, Brasil

Fatalities involving wildlife on roads and highways due to collisions with automotive vehicles represent a severe threat to the conservation of several species of terrestrial vertebrates throughout the world. However, in addition to the negative impact caused by collisions, there are also serious social and economic implications that arise from this situation. This study aims at qualifying and quantifying the collisions with fauna in the Serra da Macaca Park Road (SP-139), since the end of the revitalization work that the road was underwent – in 2015 – over a stretch of 33 km that crosses the Parque Estadual Carlos Botelho (PECB), as well as identifying the predisposing factors that lead to such accidents. The ecological analyses were generated by a combination of the records kept by the fiscalization service of the Fundação Florestal and samples collected in the field. In total, the loss of 80 individuals belonging to 27 species was recorded over an estimated period of three years. Reptiles were the most affected group, followed by mammals. A significant part of the animals was unable to be recognized to the species level, since the taxonomic identification was conducted based on the morphology of the external characteristics and several of the carcasses were completely dilacerated. We identified that the temporal variations in the fatalities are related mainly to the intensity of the traffic in the road and to the differential response of herpetofauna to the stimuli of seasonality.

As fatalidades de animais silvestres nas rodovias, decorrentes de colisões com veículos automotores, constitui grave ameaça à conservação de diversas espécies de vertebrados terrestres em todo o mundo. Entretanto, além do impacto negativo causado pelos atropelamentos, existem também implicações socioeconômicas muito sérias advindas desse tipo de conflito. O presente estudo teve como objetivo qualificar e quantificar os atropelamentos de fauna ocorridos na Estrada Parque Serra da Macaca (SP-139), desde a conclusão das suas obras de revitalização – no ano de 2015 – em um trecho de 33 km que atravessa o Parque Estadual Carlos Botelho (PECB), assim como delimitar localmente os principais fatores predisponentes. As análises ecológicas foram geradas pela combinação dos registros catalogados pelo serviço de fiscalização da Fundação Florestal com as amostras coletadas em campo. Na contagem total, detectou-se a perda de 80 indivíduos pertencentes a 27 espécies, em um período aproximado de três anos. O grupo dos répteis foi o mais afetado, seguido pelos mamíferos. Uma parte significativa dos animais não pôde ser reconhecida ao nível de espécie, visto que a identificação foi realizada com base na morfologia dos caracteres externos e muitas das carcaças estavam dilaceradas. Constatou-se que as variações temporais das fatalidades estão ligadas principalmente à intensidade de tráfego na via, e à resposta diferencial da herpetofauna aos estímulos da sazonalidade.

A summary of reptile and anuran amphibian species from Brazilian sandy coastal plains: 31 years of sampling efforts of the Laboratório de Ecologia de Vertebrados, Universidade do Estado do Rio de Janeiro

Abstract Although currently there is already a set of studies regarding ecological aspects of some particular reptile and amphibian species living in Brazilian sandy coastal plains (including the so-called restinga and campo nativo habitats), there is comparatively few information on the species composition usually associated to these environments. During 31 years (1988-2019) of herpetological studies carried out in sandy coastal plains environments by our research team of the Laboratory of Vertebrate Ecology (Department of Ecology, Universidade do Estado do Rio de Janeiro, in Rio de Janeiro Brazil) we have surveyed reptile and amphibian communities and performed different studies with similar methods in 70 sites from 10 different states along the Brazilian coast. Our surveys resulted in records of 87 species of reptile (five turtles, two crocodylians, six amphisbaenians, 36 lizards and 39 snakes) from 24 families, and 77 species of anuran amphibians from nine families. We have studied multiple natural history topics for anurans and reptiles which resulted in the publication of some specific ecological studies, especially regarding some species, encompassing population and community ecology, foraging and feeding habits, species activity, thermoregulation, reproduction, use of microhabitats, and parasitism by ecto and endoparasites. Our results along these three decades have also contributed for the description of four new lizard species (Ameivula nativo, Glaucomastix littoralis, G. abaetensis and G. itabaianensis). Our studies constitute an important contribution to the knowledge of the ecology of anuran amphibians and reptiles in these ecosystems, as well as to the conservation of sandy coastal plains environment. The checklist presented in this study, based on our records of sandy coastal plains herpetofauna, provides for many localities along the Brazilian coast, the needed knowledge on species occurrence, including the presence of endemic and/or endangered species, which can be of value for many conservation actions.

Resumo Embora atualmente exista um conjunto de estudos sobre aspectos ecológicos de algumas espécies de répteis e de anfíbios que ocorrem nas planícies costeiras arenosas brasileiras (incluindo os chamados habitats de restinga e de campo nativo), há relativamente poucas informações sobre a composição de espécies geralmente associada a esses ambientes. Durante 31 anos (1988-2019) de estudos herpetológicos realizados em restingas por nossa equipe de pesquisa do Laboratório de Ecologia de Vertebrados (Departamento de Ecologia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brasil) nós estudamos comunidades de répteis e de anfíbios e realizamos diferentes estudos com métodos semelhantes em 70 localidades de dez diferentes Estados ao longo da costa brasileira. Nossas pesquisas resultaram em registros de 87 espécies de répteis (cinco tartarugas, dois crocodilianos, seis anfisbênios, 36 lagartos e 39 serpentes) de 24 famílias, e 77 espécies de anfíbios anuros de nove famílias. Estudamos vários tópicos de história natural sobre anuros e répteis, que resultaram na publicação de alguns estudos ecológicos específicos, especialmente em relação a algumas espécies, abrangendo ecologia populacional e de comunidades, forrageamento e dieta, horário de atividade de espécies, termorregulação, reprodução, uso do microhabitat e parasitismo por ecto e endoparasitas. Nossos resultados ao longo dessas três décadas também contribuíram para a descrição de quatro novas espécies de lagartos (Ameivula nativo, Glaucomastix littoralis, G. abaetensis e G. itabaianensis). Nossos estudos constituem uma importante contribuição para o conhecimento da ecologia de répteis e de anfíbios anuros nesses ecossistemas, bem como para a conservação dos ecossistemas de restinga. A lista de espécies apresentada neste estudo, com base em nossos registros de herpetofauna das planícies costeiras arenosas, fornece para muitas localidades ao longo da costa brasileira o conhecimento necessário sobre a ocorrência de espécies, incluindo a presença de espécies endêmicas e/ ou ameaçadas de extinção, que podem ser úteis para muitas ações de conservação.

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

Abstract We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in the herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.

Living among thorns: herpetofaunal community (Anura and Squamata) associated to the rupicolous bromeliad Encholirium spectabile (Pitcairnioideae) in the Brazilian semi-arid Caatinga

Bromeliads are important habitats for reptiles and amphibians, and are constantly used as shelter, refuge, foraging or thermoregulation sites due to their foliar architecture, which allows for constant maintenance of humidity and temperature. This study aimed to identify the herpetofauna inhabiting the non-phytotelmata rupicolous bromeliad Encholirium spectabile Mart. ex Schult. & Schult.f. and to analyze the microhabitat usage of these bromeliads by different species in the Caatinga of northeastern Brazil. From January 2011 to August 2012, we collected data by active search throughout three paralel transects in a rock outcrop in the municipality of Santa Maria, state of Rio Grande do Norte. We recorded four species of anuran amphibians, six lizards, and seven snakes in the bromeliads. The average air temperature was lower and air humidity higher inside than outside the bromeliads, and bromeliads at the rock outcrop borders had lower temperatures and higher humidity than those at the center. We found a significant difference in the distribution of individuals throughout the rock outcrop, with most specimens found at the borders. We also found significant differences regarding the use of each microhabitat by the taxonomic groups, with lizards and snakes using green leaves and dry leaves evenly, along with fewer records in inflorescence stems, and anurans mainly using green leaves, with few records on dry leaves, and no records in the inflorescence stems. This study highlights rupicolous bromeliads as key elements in the conservation and maintenance of amphibians and reptiles in the rock outcrops of Brazilian semi-arid Caatinga.

Living among thorns: herpetofaunal community (Anura and Squamata) associated to the rupicolous bromeliad Encholirium spectabile (Pitcairnioideae) in the Brazilian semi-arid Caatinga

Bromeliads are important habitats for reptiles and amphibians, and are constantly used as shelter, refuge, foraging or thermoregulation sites due to their foliar architecture, which allows for constant maintenance of humidity and temperature. This study aimed to identify the herpetofauna inhabiting the non-phytotelmata rupicolous bromeliad Encholirium spectabile Mart. ex Schult. & Schult.f. and to analyze the microhabitat usage of these bromeliads by different species in the Caatinga of northeastern Brazil. From January 2011 to August 2012, we collected data by active search throughout three paralel transects in a rock outcrop in the municipality of Santa Maria, state of Rio Grande do Norte. We recorded four species of anuran amphibians, six lizards, and seven snakes in the bromeliads. The average air temperature was lower and air humidity higher inside than outside the bromeliads, and bromeliads at the rock outcrop borders had lower temperatures and higher humidity than those at the center. We found a significant difference in the distribution of individuals throughout the rock outcrop, with most specimens found at the borders. We also found significant differences regarding the use of each microhabitat by the taxonomic groups, with lizards and snakes using green leaves and dry leaves evenly, along with fewer records in inflorescence stems, and anurans mainly using green leaves, with few records on dry leaves, and no records in the inflorescence stems. This study highlights rupicolous bromeliads as key elements in the conservation and maintenance of amphibians and reptiles in the rock outcrops of Brazilian semi-arid Caatinga.(AU)

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in the herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in the herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.(AU)

Herpetofauna of Parque Estadual Altamiro de Moura Pacheco: one of the last remnants of seasonal forest in the core region of the Brazilian Cerrado

Studies in remnants of semi-deciduous seasonal forest of the Cerrado are needed to fill sampling gaps and improve basic knowledge of biodiversity. This study presents data on the herpetofauna of Parque Estadual Altamiro de Moura Pacheco, one of the last protected areas of seasonal forest in the core region of the Brazilian Cerrado. Fourteen sites were sampled between March 2007 and April 2008 using pitfall traps and active searches. A total of 35 anuran species were recorded, most of which were found in hygrophilous environments near forest fragments, open areas and riparian or gallery forest. A total of 29 reptile species were recorded, most of which were found in semi-deciduous forest and riparian or gallery forest. Fourteen of the amphibians and five of the reptiles are endemic to the Cerrado. The richness of amphibians and reptiles found in Parque Estadual Altamiro de Moura Pacheco is regionally representative, with communities typical of forest environments.

Herpetofauna of Parque Estadual Altamiro de Moura Pacheco: one of the last remnants of seasonal forest in the core region of the Brazilian Cerrado

Studies in remnants of semi-deciduous seasonal forest of the Cerrado are needed to fill sampling gaps and improve basic knowledge of biodiversity. This study presents data on the herpetofauna of Parque Estadual Altamiro de Moura Pacheco, one of the last protected areas of seasonal forest in the core region of the Brazilian Cerrado. Fourteen sites were sampled between March 2007 and April 2008 using pitfall traps and active searches. A total of 35 anuran species were recorded, most of which were found in hygrophilous environments near forest fragments, open areas and riparian or gallery forest. A total of 29 reptile species were recorded, most of which were found in semi-deciduous forest and riparian or gallery forest. Fourteen of the amphibians and five of the reptiles are endemic to the Cerrado. The richness of amphibians and reptiles found in Parque Estadual Altamiro de Moura Pacheco is regionally representative, with communities typical of forest environments.(AU)

The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms

Ilha Grande is a large continental island (total area of 19,300 ha) situated at the southern coast of the state of Rio de Janeiro, in southeast Brazil, within the Atlantic Forest Biome. Here we provide an update to the previous knowledge of the fauna of amphibians and reptiles occurring in Ilha Grande, based on primary data from our own fieldwork and on secondary data (from institutional collections and from the literature). We report the occurrence at Ilha Grande of a total of 74 species, being 34 amphibians (all of them anurans) and 40 reptiles (27 snakes, 11 lizards, one amphisbaenian and one crocodylian). Our survey added 14 species to the herpetofaunal list of Ilha Grande (three of amphibians and eleven of reptiles) and removed one species (the amphibian Cycloramphus fuliginosus) from the previous list. The data indicated that Ilha Grande houses a considerable portion of the Atlantic Forest amphibian and reptile diversity (ca. 6% and 19%, respectively, of the species occurring in this biome) together with high occurrence of species endemic to this biome plus a few amphibian species endemic to this island. Ilha Grande is thus an important reservoir of both biodiversity and endemism of amphibians and reptiles of the Atlantic Forest of Brazil, which highlights the importance of the conservation of the island and of its different habitats along the insular landscape.(AU)

The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms

Ilha Grande is a large continental island (total area of 19,300 ha) situated at the southern coast of the state of Rio de Janeiro, in southeast Brazil, within the Atlantic Forest Biome. Here we provide an update to the previous knowledge of the fauna of amphibians and reptiles occurring in Ilha Grande, based on primary data from our own fieldwork and on secondary data (from institutional collections and from the literature). We report the occurrence at Ilha Grande of a total of 74 species, being 34 amphibians (all of them anurans) and 40 reptiles (27 snakes, 11 lizards, one amphisbaenian and one crocodylian). Our survey added 14 species to the herpetofaunal list of Ilha Grande (three of amphibians and eleven of reptiles) and removed one species (the amphibian Cycloramphus fuliginosus) from the previous list. The data indicated that Ilha Grande houses a considerable portion of the Atlantic Forest amphibian and reptile diversity (ca. 6% and 19%, respectively, of the species occurring in this biome) together with high occurrence of species endemic to this biome plus a few amphibian species endemic to this island. Ilha Grande is thus an important reservoir of both biodiversity and endemism of amphibians and reptiles of the Atlantic Forest of Brazil, which highlights the importance of the conservation of the island and of its different habitats along the insular landscape.