Genetic diversity of Shepherd dog using pedigree analysis / Diversidade genética em cães da raça Pastor Alemão utilizando análise de pedigree

ABSTRACT: The German Shepherd dog breed is the most popular breed globally and in Brazil. The study of the population structure through pedigree information is an essential tool to understand the history of the Brazilian German Shepherd dog breed. This study evaluated the status of genetic diversity and population structure of the Brazilian German Shepherd dog breed. The pedigree included a total of 77,938 animals born between 1970 and 2014. The average generation interval in this population was 3.91 years. Considering the reference population, 2,183 founders were identified. Approximately 3% of the genetic diversity of the current population (2010-2014) was lost, most of which was due to genetic drift. The effective population size was relatively small, and the pedigree showed bottlenecks indicating a loss of genetic diversity in this breed. These results indicated the need to adopt measures against the excessive increase in inbreeding and monitor effective population size to minimize genetic diversity loss.

RESUMO: A raça Pastor Alemão é uma das raças mais populares no mundo e no Brasil. O estudo da estrutura populacional por meio de informações de pedigree é uma ferramenta essencial para o entendimento da história dessa raça no Brasil. Objetivou-se com o estudo avaliar o status da diversidade genética e da estrutura populacional de cães da raça Pastor Alemão. O pedigree incluiu um total de 77.938 animais nascidos entre 1970 e 2014. O intervalo médio de geração nesta população foi de 3,91 anos. Considerando a população de referência, foram identificados 2.183 fundadores. Cerca de 3% da diversidade genética da população atual (2010-2014) foi perdida, a maior parte devido à deriva genética. O tamanho efetivo da população foi relativamente pequeno e o pedigree apresentou gargalos indicando uma perda de diversidade genética nesta raça. Esses resultados indicam a necessidade de adoção de medidas contra o aumento excessivo da endogamia e do monitoramento do tamanho efetivo da população para minimizar a perda de diversidade genética.

Genetic diversity of Shepherd dog using pedigree analysis / Diversidade genética em cães da raça Pastor Alemão utilizando análise de pedigree

The German Shepherd dog breed is the most popular breed globally and in Brazil. The study of the population structure through pedigree information is an essential tool to understand the history of the Brazilian German Shepherd dog breed. This study evaluated the status of genetic diversity and population structure of the Brazilian German Shepherd dog breed. The pedigree included a total of 77,938 animals born between 1970 and 2014. The average generation interval in this population was 3.91 years. Considering the reference population, 2,183 founders were identified. Approximately 3% of the genetic diversity of the current population (2010-2014) was lost, most of which was due to genetic drift. The effective population size was relatively small, and the pedigree showed bottlenecks indicating a loss of genetic diversity in this breed. These results indicated the need to adopt measures against the excessive increase in inbreeding and monitor effective population size to minimize genetic diversity loss.

A raça Pastor Alemão é uma das raças mais populares no mundo e no Brasil. O estudo da estrutura populacional por meio de informações de pedigree é uma ferramenta essencial para o entendimento da história dessa raça no Brasil. Objetivou-se com o estudo avaliar o status da diversidade genética e da estrutura populacional de cães da raça Pastor Alemão. O pedigree incluiu um total de 77.938 animais nascidos entre 1970 e 2014. O intervalo médio de geração nesta população foi de 3,91 anos. Considerando a população de referência, foram identificados 2.183 fundadores. Cerca de 3% da diversidade genética da população atual (2010-2014) foi perdida, a maior parte devido à deriva genética. O tamanho efetivo da população foi relativamente pequeno e o pedigree apresentou gargalos indicando uma perda de diversidade genética nesta raça. Esses resultados indicam a necessidade de adoção de medidas contra o aumento excessivo da endogamia e do monitoramento do tamanho efetivo da população para minimizar a perda de diversidade genética.

Genetic structure and inbreeding in Romney Marsh sheep in Brazil / Estrutura genética e consanguinidade de ovinos Romney Marsh no Brasil

According to the last livestock census, Brazil has 17,976,367 head of sheep. Approximately 23.69% of this herd is located in the south region, where wool or wool and meat-producing breeds are predominately farmed. Inbreeding, or consanguinity, is defined as the mating of related individuals, which tends to occur when herds are small or originate from few parents. This study proposes to investigate the genetic structure and diversity of the Romney Marsh sheep herd in Brazil. The pedigree data used were obtained from the Brazilian Association of Sheep Breeders (ARCO), which keeps the sheep register database. For a more complete analysis, data from the Purebred Register Books were used. The population herein referred to as "total" comprised 22,833 individuals, whereas the population termed "reference" consisted of 17,053 records. Individual and average inbreeding coefficients, as well as overall frequencies, were calculated using SAS software. Demographic indicators were determined using ENDOG software. The average inbreeding coefficient found was 2.90% in the total population and 3.55% in the reference population. The minimum inbreeding value found in the studied population was 0.01% and the maximum was 43.47%. Inbred animals in the complete reference population were 10.31%. In 2018, inbred animals represented 82.55% of the registered population. The average generation interval was 4.0488 years. Due to the intensive use of few breeding lines and the high degree of genetic uniformity in the population, the Romney Marsh breed has narrow pedigree bottlenecks. The current population of the Romney Marsh breed has only two genetic origins, warranting the introduction of new genes to avoid genetic erosion and severe losses due to inbreeding.(AU)

O último censo pecuário informa que o Brasil possui 17.976.367 cabeças de ovinos. Aproximadamente 23,69% desse efetivo está localizado na região sul do país, onde predomina a criação de raças produtoras de lã, ou lã e carne. Endogamia ou consanguinidade é definida como o acasalamento de indivíduos relacionados, e tende a ocorrer quando os rebanhos são pequenos ou provenientes de poucos genitores. Este estudo teve como objetivo estudar a estrutura e a diversidade genética do rebanho ovino da raça Romney Marsh no Brasil. Os dados de pedigree utilizados foram obtidos na Associação Brasileira de Criadores de Ovinos (ARCO), que é a mantenedora do banco de dados de registro de ovinos. Para uma análise mais completa foram utilizados dados dos Livros de Registro Puro de Origem (PO). A população referida como "total" foi composta por 22.833 indivíduos, e a população referida como "referência" composta por 17.053 registros. Os coeficientes de consanguinidade individual e médio, bem como as frequências gerais, foram calculados usando o software SAS. Os indicadores demográficos foram determinados a partir do software ENDOG. O coeficiente de consanguinidade médio encontrado na população total foi de 2,90%, e na população de referência foi de 3,55%. O valor mínimo de consanguinidade encontrado na população estudada foi de 0,01% e o máximo, foi de 43,47%. Animais consanguíneos na população de referência completa foi de 10,31%. Em 2018 os animais consanguíneos representavam 82,55% da população cadastrada. Intervalo médio de gerações 4,0488 anos. Devido ao uso intensivo de poucas linhas de reprodutores e ao alto grau de uniformidade genética da população, a raça Romney Marsh apresenta estreitos gargalos nos pedigrees. A população atual da raça Romney Marsh provém de apenas duas origens genéticas, sendo necessário introduzir genes novos para evitar a erosão genética e perdas por consanguinidade acentuada.(AU)

Genealogical information analysis of Gyr and Nelore cattle from Costa Rica / Análise de informações genealógicas de bovinos Gir e Nelore da Costa Rica

The objectives were to analyze the genealogical information of Gyr (GY) and Nelore (NL) cattle from Costa Rica. Analyzed: pedigree integrity (GY, 13272; NL, 18153); number of complete, maximum traced and equivalent complete generations; inbreeding (FI); generation interval (GI) through four selection routes; average additive genetic ratio (AGR); effective number of founders (fe); effective number of ancestors (fa); effective population size (Ne). The analysis was performed with the ENDOG software. The maximum proportion of unknown parents, grandparents, and great-grandparents was 18.6%, 39.9%, and 59.3%, respectively. The average FI for NL was 8.87% and 2.85% in GY. The average consanguineous population (%) and FI was 53.9 and 16.5% in NL, 28.9 and 9.9% in GY. The average and maximum values of AGR for NL were 3.5 and 12.8, 1.4 and 5.6 in GY. The fe and fa for NL were 65.0 and 38.0, in GY 145.7 and 59.0. The Ne indicated increases in FI in the range of 1 to 2% in GY, for NL greater than 2%, with a status of care to monitor the evolution of F and AGR and their possible implications in genetic improvement. The GI ranged from 6.3 to 7.9 years with a general average of 6.9 years. These results show a summary of the genetic and reproductive management those breeders have carried out.

Os objetivos foram analisar as informações genealógicas de bovinos Gir (GY) e Nelore (NL) da Costa Rica. Foram considerados: integridade do pedigree (GY, 13272; NL, 18153); número de gerações completas, máximas traçadas e equivalentes completas; endogamia (FI); intervalo de geração (GI) por meio de quatro rotas de seleção; razão genética aditiva média (AGR); número efetivo de fundadores (fe); número efetivo de ancestrais (fa); tamanho efetivo da população (Ne). A análise foi realizada com o software ENDOG. A proporção máxima de pais, avós e bisavós desconhecidos foi de 18,6%, 39,9% e 59,3%, respectivamente. O FI médio para NL foi de 8,87% e 2,85% no GY. A média da população consanguínea (%) e FI foi de 53,9 e 16,5% em NL, 28,9 e 9,9% em GY. Os valores médios e máximos de AGR para NL foram 3,5 e 12,8, 1,4 e 5,6 no GY. Os fe e fa para NL foram 65,0 e 38,0, no GY 145,7 e 59,0. O Ne indicou aumentos de FI na faixa de 1 a 2% no GY, para NL superiores a 2%, com status de cuidado para acompanhar a evolução de F e AGR e suas possíveis implicações no melhoramento genético. O IG variou de 6,3 a 7,9 anos com média geral de 6,9 anos. Esses resultados mostram um resumo do manejo genético e reprodutivo realizado por esses criadores.

Genetic variability of Guzerat cattle raised in northern Brazil, based on pedigree analysis / [Variabilidade genética do gado Guzerat criado no norte do Brasil, com base na análise do pedigree]

Genealogical data comprised 45,711 animals born between 1901 and 2016, with 48,127 animals in the pedigree file. Population structure was analyzed in terms of pedigree completeness, individual inbreeding coefficient (F), generation interval (L), rate of inbreeding (ΔF), effective population size (Ne), effective number of founders (ff), and effective number of ancestors (fa). The herd initially consisted of 13 bulls and 14 cows, and there were variations in the number of selected bulls and cows throughout the analyzed period, with 2,575 bulls, 13,691 cows, and 45,711 births recorded at the end of 2016. In total, 48.81% of the cows had only one progeny. Most dams (47.59%) were between three and seven years old, with a mean L in the population of 7.9 years. According to the results, 52.75% of the cows, 44.92% of the bulls, and 63.71% of the calves of the Guzerat breed in the northern region of Brazil showed some degree of inbreeding, with small-magnitude coefficients (0.56, 0.83, and 0.71% for cows, bulls, and calves, respectively). This fluctuation did not hinder the genetic evolution of the herd in the region. The effective population size does not seem to compromise the maintenance of genetic variability in the breed.

Os dados genealógicos compreenderam 45.711 animais nascidos entre 1901 e 2016, com 48.127 animais no arquivo de pedigree. A estrutura populacional foi analisada em termos de completude de pedigree, coeficiente de endogamia individual (F), intervalo de geração (L), taxa de endogamia (ΔF), tamanho efetivo da população (Ne), número efetivo de fundadores (ff) e número efetivo de ancestrais (fa). O rebanho consistia inicialmente de 13 touros e 14 vacas, e houve variações no número de touros e vacas selecionados ao longo do período analisado, com 2.575 touros, 13.691 vacas e 45.711 nascimentos registrados no final de 2016. No total, 48,81% das vacas tiveram apenas uma progênie. A maioria das barragens (47,59%) tinha entre três e sete anos, com média de L na população de 7,9 anos. De acordo com os resultados, 52,75% das vacas, 44,92% dos touros e 63,71% dos bezerros da raça Guzerá na região Norte do Brasil apresentaram algum grau de endogamia, com coeficientes de pequena magnitude (0,56, 0,83 e 0,71% para vacas, touros e bezerros, respectivamente). Essa flutuação não impediu a evolução genética do rebanho na região. O tamanho efetivo da população não parece comprometer a manutenção da variabilidade genética na raça.

pedSimulate ­ An R package for simulating pedigree, genetic merit, phenotype, and genotype data

This study aimed to introduce R package pedSimulate, which was built to simulate pedigree, genetic merit, phenotype, and genotype data. These are amongst the most important data types that animal breeders and quantitative geneticists deal with. Twenty pedigrees with ten generations were simulated applying different combinations of three parameters: genetic variance (10 vs. 20), proportion of males selected (10 vs. 20%), and the pattern for selecting females (random, positively, or negatively based on own phenotype or parent average). Males were selected positively based on parent average. Consequently, assortative mating was applied to the pedigrees in which females were positively selected based on their own phenotype or parent average. Disassortative mating was applied to the pedigrees in which females were selected negatively based on phenotype or parent averages. Genetic gain and response to selection over generations were positive for all the pedigrees due to high selection intensity on males, mating each male with multiple females, and moderate to high heritability (0.25 and 0.40 for genetic variances 10 and 20, and the residual variance of 30). Genetic variance showed a slightly increasing trend over generations by assortative mating and lower selection intensity on males. Selection intensity on females was the same in all the pedigrees. This study provided examples of how R package pedSimulate can be adopted for pedigree, genetic merit, phenotype, and genotype data simulation in animal breeding studies. By using different functions and combining different parameters for their arguments, many scenarios can be simulated by R package pedSimulate.(AU)

Structure and genetic variability of the mexican Sardo Negro breed / Análise da estrutura e variabilidade genética da raça Sardo Negro do México

This study analyzed the Sardo Negro breed pedigree (41,521 animals registered from 1958 to 2019) to determine its structure, evolution, and genetic variability (GV). The population genetic parameters evaluated were effective number of founders (fe) and ancestors (fa), pedigree integrity, additive genetic relationship (AGR); number of complete generations (NCG), maximum generations traced (NMGT), and equivalent complete generations (NECG); effective population size (Ne), inbreeding coefficient (F), and generation interval (GI). The average GI was 7.45 years. A total of 7,804 founders and 4,856 ancestors were identified for a fe of 185 and a fa of 97. The average and maximum values of NCG, NECG, and NMGT were 1.6 and 5.0, 2.5 and 6.5, 4.3 and 12, with Ne estimates of 15.9, 25.9, and 69.0, respectively. The increase in F, linked to Ne, ranged from 0.72% to 3.1% per generation. The average values for F and AGR were 3.6% and 1.0%, respectively. The proportion of inbred individuals was 32.0%, with F values ranging from 0.01 to 62.2% and an average of 11.3%. The rate of inbred population was 1.3% per year. The annual rate of AGR was 0.04%. For the continuity and projection of the breed, the evolution of F as a function of Ne and the possible implications of the selection schemes must be considered. The genetic variability sustained over time results from the Ne.

Os objetivos deste estudo foram analisar o pedigree (41.521 registros de 1958 a 2019) da raça Sardo Negro para avaliar a estrutura, evolução e variabilidade genética (VG) da população. Os parâmetros genéticos populacionais utilizados foram: número efetivo de fundadores (fe) e ancestrais (fa); integridade do pedigree; relação genética aditiva (RGA); número de gerações completas (NGC), máximo plotado (NGT) e equivalentes (NGE); tamanho efetivo (Ne); consanguinidade (F); intervalo geracional (IG). O IG médio foi de 7,45 anos. Foram identificados 7.804 fundadores e 4.856 ancestrais, para fe 185 e 97 na fa. As médias e máximas para NGC, NGE e NGT foram 1,6 e 5,0, 2,5 e 6,5, 4,3 e 12, com estimativas de Ne 15,9, 25,9 e 69,0, respectivamente. O aumento de F, vinculado ao Ne, ficou na faixa de 0,72% a 3,1% por geração. A média para F 3,6% e 1,0% em RGA; a proporção de consanguíneos foi de 32,0%, com F na faixa de 0,01 a 62,2% e média de 11,3%. A taxa da população consanguínea foi de 1,3% ao ano. No RGA, a taxa ao ano era de 0,04%. Para a continuidade e projeção da raça, deve-se considerar a evolução de F em função de Ne e as possíveis implicações dos esquemas de seleção. A variabilidade genética sustentada ao longo do tempo resulta do Ne.

Effect of rearing, season of birth, and father on labyrinth behaviour of dairy heifers

Objective of this study was to test the hypotheses that heifer's behaviour after 12 months (M) are impacted by rearing (feeding/housing) before weaning, seasons of birth, and father lineage. Fifty-one Holstein heifers (born in year seasons SB1, SB2, SB3, and SB4, originating from 4 fathers) were assigned to one of three rearing treatments: restricted suckling (RS), calf in pen with mother to 21st day, suck three times daily, then group pen (6 kg milk) to weaning; unrestricted suckling (US), calf in pen with foster cows (6 kg milk) to weaning; conventional rearing (CR), calf in the hutch to 56th day, then group pen to weaning (milk replacer 6 kg). After weaning at the 84th day, heifers were kept in groups with the same ration. The labyrinth behaviour was tested in the 12th and 19th M of the age. In the evaluation factors rearing and season of birth, groups US and SB3 solved the passage of the labyrinth the fastest (868.0 s, 857.4 s), the slowest were CR and SB1 (1148.2 s, 1257.5 s). The results show that the manner (housing/feeding) used to rear heifers and season of birth may impact their later labyrinth behaviour.

Genetic parameters for growth, reproductive, and carcass traits in Tabapuã cattle

We aimed to estimate genetic parameters for growth, reproductive, and carcass traits in Tabapuã cattle. Phenotypic data were collected between 1990 and 2019 in 1,218 farms, and the pedigree file had 340,868 animals. The traits evaluated were body weight at 120 (W120), 210 (W210), 365 (W365), and 550 (W550) days of age; age at first calving (AFC), scrotal circumference at 365 days of age (SC365), ribeye area (REA), backfat thickness (BF), and rump fat thickness (RF). The (co)variance components were estimated using the restricted maximum likelihood method, considering single and two-traits animal models. For all traits, the models considered fixed, direct additive genetic, and residual random effects. In addition, for W120 and W210, the maternal additive genetic and maternal permanent environmental effects were also included. Heritabilities for W120, W210, W365, W550, SC365, REA, BF, and RF were of moderate magnitude (0.15, 0.16, 0.23, 0.19, 0.22, 0.36, 0.31, and 0.27, respectively). Low heritability was observed for AFC (0.07). The genetic correlations between growth traits were higher than 0.90, while AFC and SC365 presented negative moderate correlation (−0.66). The REA showed low genetic correlations with BF (0.07) and RF (0.07), whereas BF and RF were highly correlated (0.77). Considering the heritability estimates, selection for AFC would result in limited genetic gain, while for the other traits, it would be satisfactory. Based on the high genetic correlations between growth traits, selection of Tabapuã animals can be performed at younger ages. Additionally, animals can be indirectly selected for AFC through SC365, and only one fat thickness trait may be used in the selection process considering the high genetic correlation and similar heritability values for BF and RF.(AU)

Analysis of the population structure of a cattle conservation nucleus Curraleiro Pé Duro / [Análise da estrutura populacional de um núcleo de conservação de bovino Curraleiro Pé Duro]

The objective of this research was to study the population structure of the Cattle Conservation Nucleos Curraleiro Pé Duro of the Instituto Nacional do Semiárido (NCP_INSA) based on pedigree data. Genealogical information from 338 animals registered in the period from 1991 to 2019 was used. The number of founding animals (Nf), the effective number of founders (fe), effective number of ancestors (fa), inbreeding coefficient (F), and average relatedness coefficient (AR), in addition to Fis, Fit and Fst were estimated. It was possible to identify ancestors up to the third generation, with an increase in information over the generations. Of the total pedigree information evaluated, 90.53% had the identification of the father and mother. The effective size of the population was smaller than those proposed by FAO, suggesting the need to redefine the herd management and genetic management plan strategies, promoting gene flow and breed expansion.(AU)

O objetivo com essa pesquisa foi estudar a estrutura populacional do Núcleo de Conservação de Bovinos Curraleiro Pé-Duro (NCP) do Instituto Nacional do Semiárido (INSA), por meio de dados de pedigree. Utilizaram-se informações genealógicas de 338 animais registrados no período de 1991 a 2019. Foi estimado o número de animais fundadores (Nf), o número efetivo de fundadores (fe), o número efetivo de ancestrais (fa), o coeficiente de endogamia (F) e o coeficiente de parentesco médio (AR), além do Fis, Fit e Fst. Foi possível identificar ancestrais até a terceira geração, com aumento crescente das informações ao longo das gerações. Do total de informações avaliadas, 90,53% possuíam identificação do pai e da mãe. O tamanho efetivo da população foi inferior ao mínimo proposto pela FAO, o que sugere a necessidade de redefinir as estratégias do plano de gestão e de manejo genético do rebanho, de modo a promover fluxo gênico e expansão da raça.(AU)

Alternatives for obtaining a continuous cell line from Apis mellifera / Alternativas para a obtenção de uma linhagem celular contínua de abelhas Apis mellifera

In worldwide there are reports of a significant decrease in colonies of the species Apis mellifera, caused by several factors, including viral infections. In order to study and diagnose illnesses caused by viruses, in vitro cell culture is used as a valuable tool. Yet, there are still no immortalized cell lines of honey bee Apis mellifera. Primary cell cultures are promising for this purpose and can supply the lack of continuous strains, but their establishment is difficult and laborious, which often makes them unfeasible for many research centers. Through the use of cell immortalization techniques, it is possible to develop continuous cell lines and thus benefit, in different ways, research related to different species of bees. The choice of technique is challenging, since in addition to the ability to remain viable for countless passages, cells must keep the genotype and phenotype similar or identical to the original tissue. This review intends to present methodologies that can be used to immortalize Apis mellifera cells, aiming to establish a cell line. The genotypic and phenotypic implications of each technique are evaluated, and the purpose of the cell line to be developed.

Ao redor do mundo há relatos da diminuição significativa de colônias da espécie Apis mellifera, causada por diversos fatores, incluindo infecções virais. Para estudo e diagnóstico de enfermidades causadas por vírus utiliza-se, como uma ferramenta valiosa, o cultivo celular in vitro. Contudo, ainda não existem linhagens celulares imortalizadas de abelhas Apis mellifera. Os cultivos celulares primários são promissores para este fim e podem suprir a falta de linhagens contínuas, porém seu estabelecimento é difícil e laborioso o que, muitas vezes, os torna inviáveis para muitos centros de pesquisa. Através do uso de técnicas de imortalização celular é possível desenvolver linhagens contínuas de células e assim beneficiar, de diversas formas, as pesquisas relacionadas às diferentes espécies de abelhas. A escolha da técnica é desafiadora, visto que, além da capacidade de permanecer viável por inúmeras passagens, as células devem manter o genótipo e fenótipo semelhante ou idêntico ao tecido original. O objetivo deste trabalho é apresentar metodologias que podem ser utilizadas para imortalização de células de Apis mellifera, visando o estabelecimento de uma linhagem celular. São avaliadas as implicações genotípicas e fenotípicas de cada técnica, e a finalidade da linhagem celular a ser desenvolvida.

Alternatives for obtaining a continuous cell line from Apis mellifera / Alternativas para a obtenção de uma linhagem celular contínua de abelhas Apis mellifera

In worldwide there are reports of a significant decrease in colonies of the species Apis mellifera, caused by several factors, including viral infections. In order to study and diagnose illnesses caused by viruses, in vitro cell culture is used as a valuable tool. Yet, there are still no immortalized cell lines of honey bee Apis mellifera. Primary cell cultures are promising for this purpose and can supply the lack of continuous strains, but their establishment is difficult and laborious, which often makes them unfeasible for many research centers. Through the use of cell immortalization techniques, it is possible to develop continuous cell lines and thus benefit, in different ways, research related to different species of bees. The choice of technique is challenging, since in addition to the ability to remain viable for countless passages, cells must keep the genotype and phenotype similar or identical to the original tissue. This review intends to present methodologies that can be used to immortalize Apis mellifera cells, aiming to establish a cell line. The genotypic and phenotypic implications of each technique are evaluated, and the purpose of the cell line to be developed.(AU)

Ao redor do mundo há relatos da diminuição significativa de colônias da espécie Apis mellifera, causada por diversos fatores, incluindo infecções virais. Para estudo e diagnóstico de enfermidades causadas por vírus utiliza-se, como uma ferramenta valiosa, o cultivo celular in vitro. Contudo, ainda não existem linhagens celulares imortalizadas de abelhas Apis mellifera. Os cultivos celulares primários são promissores para este fim e podem suprir a falta de linhagens contínuas, porém seu estabelecimento é difícil e laborioso o que, muitas vezes, os torna inviáveis para muitos centros de pesquisa. Através do uso de técnicas de imortalização celular é possível desenvolver linhagens contínuas de células e assim beneficiar, de diversas formas, as pesquisas relacionadas às diferentes espécies de abelhas. A escolha da técnica é desafiadora, visto que, além da capacidade de permanecer viável por inúmeras passagens, as células devem manter o genótipo e fenótipo semelhante ou idêntico ao tecido original. O objetivo deste trabalho é apresentar metodologias que podem ser utilizadas para imortalização de células de Apis mellifera, visando o estabelecimento de uma linhagem celular. São avaliadas as implicações genotípicas e fenotípicas de cada técnica, e a finalidade da linhagem celular a ser desenvolvida.(AU)

Genetic diversity and heterotic grouping of sorghum lines using SNP markers

Sorghum breeding programs are based predominantly on developing homozygous lines to produce single cross hybrids, frequently with relatively narrow genetic bases. The adoption of complementary strategies, such as genetic diversity study, enables a broader vision of the genetic structure of the breeding germplasm. The purpose of this study was to evaluate the genetic diversity of sorghum breeding lines using structure analysis, principal components (PC) and clustering analyses. A total of 160 sorghum lines were genotyped with 29,649 SNP markers generated by genotyping-by-sequencing (GBS). The PC and clustering analyses consistently divided the R (restorer) and B (maintainer) lines based on their pedigree, generating four groups. Thirty-two B and 21 R lines were used to generate 121 single-cross hybrids, whose performances were compared based on the diversity clustering of each parental line. The genetic divergence of B and R lines indicated a potential for increasing heterotic response in the development of hybrids. The genetic distance was correlated to heterosis, allowing for the use of markers to create heterotic groups in sorghum.(AU)

Genetic diversity and heterotic grouping of sorghum lines using SNP markers

Sorghum breeding programs are based predominantly on developing homozygous lines to produce single cross hybrids, frequently with relatively narrow genetic bases. The adoption of complementary strategies, such as genetic diversity study, enables a broader vision of the genetic structure of the breeding germplasm. The purpose of this study was to evaluate the genetic diversity of sorghum breeding lines using structure analysis, principal components (PC) and clustering analyses. A total of 160 sorghum lines were genotyped with 29,649 SNP markers generated by genotyping-by-sequencing (GBS). The PC and clustering analyses consistently divided the R (restorer) and B (maintainer) lines based on their pedigree, generating four groups. Thirty-two B and 21 R lines were used to generate 121 single-cross hybrids, whose performances were compared based on the diversity clustering of each parental line. The genetic divergence of B and R lines indicated a potential for increasing heterotic response in the development of hybrids. The genetic distance was correlated to heterosis, allowing for the use of markers to create heterotic groups in sorghum.

Inclusion of genomic information in estimation of genetic parameters for body weights and visual scores in Nelore cattle

The aim of this study was to evaluate genomic information inclusion in genetic parameter estimation of standardized body weight at birth and at 240, 365, and 450 days of age, and visual scores for body structure, precocity, and body muscularity, measured as yearlings in Nelore cattle. We compared genetic parameters, (co)variance components (estimated from Bayesian inference and Gibbs sampling), breeding value accuracies, genetic trends, and principal component analysis (PCA) obtained through traditional GBLUP and ssGBLUP methods. For all traits analyzed, part of the phenotypic variation was explained by the additive genetic effect, thus indicating the capacity of traits to respond to the selection process. Estimates of genetic correlation, in both methodologies, between body weights and visual scores were, in general, high and positive, showing that the selection for visual scores can lead to heavier animals. Genetic trends showed genetic progress, both when estimated breeding values and genomic estimated breeding values were used. The PCA, genetic trends, and accuracy estimates on breeding values showed that inclusion of single nucleotide polymorphism information contributed towards slightly better estimates of the genetic variability of evaluated traits. Genomic information did not bring greater gains in genetic estimates, due to redundancy of kinship information from the pedigree, which already had complete animal kinship data.

Bioengenharia: transplante de células-tronco espermatogoniais em mamíferos / Bioengineering: spermatogonial stem cells transplantation in mammals

O transplante de espermatogônias tronco (SSCs, do inglês Spermatogonial Stem Cell) é uma biotecnologia que consiste na transferência de células tronco testiculares de um doador fértil para um receptor cuja espermatogênese endógena foi suprimida. Essa técnica pode ser aplicada para a produção de machos que gerem uma progênie com características genotípicas do doador selecionado. Especialmente na bovinocultura, tanto de leite como de corte, o transplante de SSCs tem o potencial de substituir a inseminação artificial (IA). Pode-se também, colocar SSCs de um mesmo doador (de genética superior) em mais de um receptor o que aumentaria o número de filhos desse doador. Além disso, possui outras aplicações como a restauração da fertilidade em homens após o tratamento de câncer, conservação de espécies ameaçadas de extinção e tratamento de causas específicas de infertilidade. Assim, com esta revisão tem-se como propósito discorrer acerca de uma biotecnologia da reprodução que permitirá a propagação do valor genético de doadores de sêmen considerados de alto valor zootécnico.

Spermatogonial Stem Cell (SSCs) transplantation is a biotechnology that consists in the transfer of testicular stem cells from a fertile donor to a recipient whose endogenous spermatogenesis has been depleted. This technique can be applied to the production of males that generate a progeny with genotypic characteristics of the selected donor. Especially in beef and dairy cattle, SSCs transplantation has the potential to replace artificial insemination (AI). In addition, it has other applications such as restoring fertility in human species after cancer treatment, conserving endangered species and treating specific causes of infertility. Thus, this aim of this review is to discuss the perspectives of reproductive biotechnology that allows the propagation of the genetic material of high pedigree males.

Bioengenharia: transplante de células-tronco espermatogoniais em mamíferos / Bioengineering: spermatogonial stem cells transplantation in mammals

O transplante de espermatogônias tronco (SSCs, do inglês Spermatogonial Stem Cell) é uma biotecnologia que consiste na transferência de células tronco testiculares de um doador fértil para um receptor cuja espermatogênese endógena foi suprimida. Essa técnica pode ser aplicada para a produção de machos que gerem uma progênie com características genotípicas do doador selecionado. Especialmente na bovinocultura, tanto de leite como de corte, o transplante de SSCs tem o potencial de substituir a inseminação artificial (IA). Pode-se também, colocar SSCs de um mesmo doador (de genética superior) em mais de um receptor o que aumentaria o número de filhos desse doador. Além disso, possui outras aplicações como a restauração da fertilidade em homens após o tratamento de câncer, conservação de espécies ameaçadas de extinção e tratamento de causas específicas de infertilidade. Assim, com esta revisão tem-se como propósito discorrer acerca de uma biotecnologia da reprodução que permitirá a propagação do valor genético de doadores de sêmen considerados de alto valor zootécnico.(AU)

Spermatogonial Stem Cell (SSCs) transplantation is a biotechnology that consists in the transfer of testicular stem cells from a fertile donor to a recipient whose endogenous spermatogenesis has been depleted. This technique can be applied to the production of males that generate a progeny with genotypic characteristics of the selected donor. Especially in beef and dairy cattle, SSCs transplantation has the potential to replace artificial insemination (AI). In addition, it has other applications such as restoring fertility in human species after cancer treatment, conserving endangered species and treating specific causes of infertility. Thus, this aim of this review is to discuss the perspectives of reproductive biotechnology that allows the propagation of the genetic material of high pedigree males.(AU)

Testers in supersweet corn lines / Avaliação de testadores em linhagens de milho superdoce

The purpose of this study was to evaluate the discriminatory capacity of tester lines for tropical corn lines converted to supersweet shrunken (sh2) gene, for the development of hybrids adapted to tropical conditions. Lines were used as female parents in crosses with three testers: open-pollinated mixed variety; supersweet line L4; supersweet commercial hybrid Tropical Plus. Four trials were carried out to evaluate topcrosses in Maringá - PR e Sabáudia - PR, Brazil in the main growing season of 2015/16. The following traits were evaluated: total ear weight (TEW, in kg), commercial ear weight (CEW, in kg) and total soluble solids (TSS, in °Brix). The GCA estimates for TEW and CEW were highest for L4. The lines Balu-114 and UEM-25 were selected based on the effects of ĝi for the traits studied and should be used in the establishment of base populations for the breeding of superior lines. The ŝij value for TEW was highest for cross BALU-182 x Tropical, while for CEW was the highest value for cross BALU-94 x Mista.(AU)

O presente trabalho teve como objetivo avaliar o desempenho de testadores quanto à capacidade de discriminação de linhagens tropicais convertidas à superdoce, por meio da incorporação do gene shrunken (sh2), visando a produção de híbridos adaptados às condições tropicais. As linhagens utilizadas como parentais femininos foram os testadores: variedade de polinização aberta Mista; linhagem superdoce L4; híbrido comercial superdoce Tropical Plus. Os quatro experimentos foram conduzidos em Maringá - PR e Sabáudia - PR, na safra verão de 2015/16. As características avaliadas foram: Peso de espigas totais (PET, em kg), Peso de espigas comerciais (PEC, em kg) e sólidos solúveis totais (SST, em ºBrix). A linhagem L4 foi o testador que mais proporcionou efeito de heterose. As maiores estimativas de CGC para PET e PEC foram obtidas por L4. As linhagens Balu-114 e UEM-25 foram selecionados com base nos efeitos de ĝi para as características estudadas e deverão ser utilizados na formação de populações base para a extração de linhagens superiores. O cruzamento BALU-182 x Tropical apresentou o maior valor de ŝij para PET, enquanto o cruzamento BALU-94 x Mista obteve o melhor valor para PEC.(AU)

Handling, reactivity and price of beef cattle

Given the importance of cattle breeding for the Brazilian economy, as well as the growing concern with animal welfare, studies that clearly and objectively approach the way cattle are handled during auctions become necessary. This study aims, hence, at assessing the influence of cattle handling on the reactivity of animals at the time of arrival at the exhibition park. We also aimed to evaluate the impact of reactivity and visual aspects on the price for animals atauctions in the northern region of the state of Minas Gerais. We observed 241 lots of commercial and 43 lots of pedigree cattle in loco, assessing the type of handling and the cattle's behavior when arriving at the exhibition park, accommodation in the corral and loading to the destination. Upon arrival, commercial animals were more reactive than pedigree cattle due to the change of environment exhibition park as opposed to their original habitat, and also to the number of visitors who induce stress and cause the animals to retreat. Commercial and pedigree females were more reactive than males upon arrival and loading, particularly when close to their offspring. Commercial animals that scored high in aggressiveness had smaller flight zones, for they run toward fences when threatened. Young commercial animals entered the auction ring with no external help due to anxiety and restlessness. The visual aspect influences the price in virtual markets.(AU)

Taxonomic review of the typical long-snouted species of Corydoras (Siluriformes: Callichthyidae) from the río de La Plata basin

The typical long-snouted species of Corydoras from the río de La Plata basin were reviewed herein, and the previously proposed synonymy of Corydoras ellisae was corroborated. Corydoras areio and C. aurofrenatus are diagnosed from their congeners, excluding those in lineage 1, by the following features: temporal sensory canal in sphenotic with two pores; upper tooth plate of branchial arch with three or four series of teeth; fleshy flap at mouth corner. Corydoras areio differs from all lineage 1 congeners by having infraorbital 2 with relatively wider posterior laminar expansion; absence of large patches of black pigmentation on the body and absence of conspicuous concentration of dark brown or black chromatophores on anterior portion of the dorsal fin; and presence of blotches on flanks not aligned in longitudinal series. Corydoras aurofrenatus differs from all lineage 1 congeners by having ventral surface of head and trunk densely covered by small, not coalescent platelets; middle portion of flank with two or three dark brown or black patches (below the dorsal-fin, below the adipose-fin base, and on the caudal peduncle base, diffuse and variably present), patches decreasing in size posteriorly; poorly developed fleshy flap at the corner of mouth; anteroventral portion of cleithrum exposed.(AU)

As espécies típicas de focinho longo de Corydoras da bacia do río de La Plata foram revisadas, e a sinonímia proposta anteriormente de Corydoras ellisae foi corroborada. Corydoras areio e C. aurofrenatus são diagnosticadas de seus congêneres, excluindo aquelas da linhagem 1, pelas seguintes características: canal sensorial temporal no esfenótico com dois poros; placa dentária superior do arco branquial com três ou quatro séries de dentes; aba carnosa no canto da boca. Corydoras areio difere de todos os congêneres da linhagem 1 pelo infraorbital 2 com expansão laminar posterior relativamente mais ampla; ausência de grandes manchas de pigmentação preta no corpo e ausência de concentração conspícua de cromatóforos marrom-escuros ou pretos na porção anterior da nadadeira dorsal; presença de manchas laterais não alinhadas em série longitudinal. Corydoras aurofrenatus difere de todas as congêneres da linhagem 1 pela superfície ventral da cabeça e do tronco densamente coberta por pequenas plaquetas não coalescentes; porção média lateral com duas ou três manchas marrom-escuras ou pretas (abaixo da nadadeira dorsal, abaixo da base da nadadeira adiposa, e na base do pedúnculo caudal, difusa e variavelmente presente), manchas diminuindo de tamanho posteriormente; aba carnosa pouco desenvolvida no canto da boca; porção anteroventral do cleitro exposta.(AU)