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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 286: 121960, 2023 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-36240700

RESUMO

Nitrite ions are important markers threatening humans and environmental security. A highly selective method for rapid detection of nitrite needs to be developed. Herein, a novel and rapid fluorescence method for nitrite determination is established on the basis of diazotization-coupling reaction of methanobactin (Mb) extracted by Methylosinus trichosporium OB3b with nitrite on the fluorescence. In the presence of gold nanoparticles (AuNPs), the fluorescence of AuNPs was strongly quenched by the Mb because the sulfhydryl or amino structures on the surface of Mb could be bound to the surface of AuNPs by forming Au-S or Au-N bonds. Upon addition of nitrite, the Mb easily reacts with nitrite to form azo products in the acidic medium. Then, with the increase of nitrite concentration, the Mb-AuNPs fluorescence was gradually recovered, realizing the turn-on fluorescence sensing of nitrite. Under optimal conditions, the proposed method has a good linear relationship with nitrite concentration in the range of 0-8.0 µM and 8.0-50.0 µM, and the detection limit is 16.21 nM. In addition, satisfactory results were obtained for nitrite analysis using milk, ham sausage and leaf mustard as real samples, which demonstrated that the method as-developed would have great practical application prospects.


Assuntos
Análise de Alimentos , Ouro , Nanopartículas Metálicas , Nitritos , Corantes Fluorescentes/química , Ouro/química , Limite de Detecção , Nanopartículas Metálicas/química , Nitritos/análise , Análise de Alimentos/métodos , Methylosinus
2.
Dalton Trans ; 50(45): 16493-16498, 2021 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-34734616

RESUMO

By facilitating electron transfer to the hydroxylase diiron center, MMOR-a reductase-serves as an essential component of the catalytic cycle of soluble methane monooxygenase. Here, the X-ray structure analysis of the FAD-binding domain of MMOR identified crucial residues and its influence on the catalytic cycle.


Assuntos
Flavina-Adenina Dinucleotídeo/metabolismo , Methylosinus/metabolismo , Oxirredutases/metabolismo , Sítios de Ligação , Catálise , Cristalografia por Raios X , Transporte de Elétrons , Flavina-Adenina Dinucleotídeo/química , Methylosinus/enzimologia , Oxirredutases/química , Oxigenases/metabolismo , Conformação Proteica , Domínios Proteicos
3.
Biochemistry ; 60(38): 2845-2850, 2021 09 28.
Artigo em Inglês | MEDLINE | ID: mdl-34510894

RESUMO

Methanobactins (Mbns) are ribosomally produced, post-translationally modified peptidic natural products that bind copper with high affinity. Methanotrophic bacteria use Mbns to acquire copper needed for enzymatic methane oxidation. Despite the presence of Mbn operons in a range of methanotroph and other bacterial genomes, few Mbns have been isolated and structurally characterized. Here we report the isolation of a novel Mbn from the methanotroph Methylosinus (Ms.) sp. LW3. Mass spectrometric and nuclear magnetic resonance spectroscopic data indicate that this Mbn, the largest characterized to date, consists of a 13-amino acid backbone modified to include pyrazinedione/oxazolone rings and neighboring thioamide groups derived from cysteine residues. The pyrazinedione ring is more stable to acid hydrolysis than the oxazolone ring and likely protects the Mbn from degradation. The structure corresponds exactly to that predicted on the basis of the Ms. sp. LW3 Mbn operon content, providing support for the proposed role of an uncharacterized biosynthetic enzyme, MbnF, and expanding the diversity of known Mbns.


Assuntos
Cobre/metabolismo , Methylosinus/enzimologia , Methylosinus/metabolismo , Sequência de Aminoácidos/genética , Proteínas de Bactérias/metabolismo , Produtos Biológicos/metabolismo , Quelantes/química , Cobre/química , Expressão Gênica/genética , Regulação Bacteriana da Expressão Gênica/genética , Genoma Bacteriano/genética , Imidazóis/metabolismo , Metano/metabolismo , Methylosinus/genética , Methylosinus trichosporium/enzimologia , Methylosinus trichosporium/genética , Methylosinus trichosporium/metabolismo , Oligopeptídeos/metabolismo , Óperon/genética , Oxirredução , Peptídeos/metabolismo
4.
Microbes Environ ; 35(1)2020.
Artigo em Inglês | MEDLINE | ID: mdl-32037377

RESUMO

Although the bioavailability of rare earth elements (REEs, including scandium, yttrium, and 15 lanthanides) has not yet been examined in detail, methane-oxidizing bacteria (methanotrophs) were recently shown to harbor specific types of methanol dehydrogenases (XoxF-MDHs) that contain lanthanides in their active site, whereas their well-characterized counterparts (MxaF-MDHs) were Ca2+-dependent. However, lanthanide dependency in methanotrophs has not been demonstrated, except in acidic environments in which the solubility of lanthanides is high. We herein report the isolation of a lanthanide-dependent methanotroph from a circumneutral environment in which lanthanides only slightly dissolved. Methanotrophs were enriched and isolated from pond sediment using mineral medium supplemented with CaCl2 or REE chlorides. A methanotroph isolated from the cerium (Ce) chloride-supplemented culture, Methylosinus sp. strain Ce-a6, was clearly dependent on lanthanide. Strain Ce-a6 only required approximately 30 nM lanthanide chloride for its optimal growth and exhibited the ability to utilize insoluble lanthanide oxides, which may enable survival in circumneutral environments. Genome and gene expression analyses revealed that strain Ce-a6 lost the ability to produce functional MxaF-MDH, and this may have been due to a large-scale deletion around the mxa gene cluster. The present results provide evidence for lanthanide dependency as a novel survival strategy by methanotrophs in circumneutral environments.


Assuntos
Genoma Bacteriano/genética , Elementos da Série dos Lantanídeos/metabolismo , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Oxirredutases do Álcool/genética , Proteínas de Bactérias/genética , Meios de Cultura/metabolismo , Sedimentos Geológicos/microbiologia , Metais Terras Raras/metabolismo , Metano/metabolismo , Methylosinus/classificação , Methylosinus/genética , Methylosinus/isolamento & purificação , Methylosinus/metabolismo , Lagoas/microbiologia , Proteobactérias/classificação , Proteobactérias/fisiologia , RNA Ribossômico 16S/genética
5.
Sci Adv ; 5(10): eaax0059, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31616787

RESUMO

Soluble methane monooxygenase in methanotrophs converts methane to methanol under ambient conditions. The maximum catalytic activity of hydroxylase (MMOH) is achieved through the interplay of its regulatory protein (MMOB) and reductase. An additional auxiliary protein, MMOD, functions as an inhibitor of MMOH; however, its inhibitory mechanism remains unknown. Here, we report the crystal structure of the MMOH-MMOD complex from Methylosinus sporium strain 5 (2.6 Å). Its structure illustrates that MMOD associates with the canyon region of MMOH where MMOB binds. Although MMOD and MMOB recognize the same binding site, each binding component triggers different conformational changes toward MMOH, which then respectively lead to the inhibition and activation of MMOH. Particularly, MMOD binding perturbs the di-iron geometry by inducing two major MMOH conformational changes, i.e., MMOH ß subunit disorganization and subsequent His147 dissociation with Fe1 coordination. Furthermore, 1,6-hexanediol, a mimic of the products of sMMO, reveals the substrate access route.


Assuntos
Proteínas de Bactérias/metabolismo , Methylosinus/enzimologia , Oxigenases de Função Mista/química , Oxigenases/química , Sítios de Ligação , Cristalografia por Raios X , Glicóis/metabolismo , Ferro/metabolismo , Oxigenases de Função Mista/metabolismo , Modelos Moleculares , Oxigenases/metabolismo , Estrutura Secundária de Proteína , Solubilidade , Homologia Estrutural de Proteína , Especificidade por Substrato
6.
Biochemistry ; 57(25): 3515-3523, 2018 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-29694778

RESUMO

Methanobactins (Mbns) are ribosomally produced, post-translationally modified bacterial natural products with a high affinity for copper. MbnN, a pyridoxal 5'-phosphate-dependent aminotransferase, performs a transamination reaction that is the last step in the biosynthesis of Mbns produced by several Methylosinus species. Our bioinformatic analyses indicate that MbnNs likely derive from histidinol-phosphate aminotransferases (HisCs), which play a key role in histidine biosynthesis. A comparison of the HisC active site with the predicted MbnN structure suggests that MbnN's active site is altered to accommodate the larger and more hydrophobic substrates necessary for Mbn biosynthesis. Moreover, we have confirmed that MbnN is capable of catalyzing the final transamination step in Mbn biosynthesis in vitro and in vivo. We also demonstrate that without this final modification, Mbn exhibits significantly decreased stability under physiological conditions. An examination of other Mbns and Mbn operons suggests that N-terminal protection of this family of natural products is of critical importance and that several different means of N-terminal stabilization have evolved independently in Mbn subfamilies.


Assuntos
Vias Biossintéticas , Imidazóis/metabolismo , Methylosinus/enzimologia , Oligopeptídeos/metabolismo , Transaminases/metabolismo , Domínio Catalítico , Imidazóis/química , Methylosinus/química , Methylosinus/metabolismo , Modelos Moleculares , Oligopeptídeos/química , Especificidade por Substrato , Transaminases/química
7.
Biochemistry (Mosc) ; 82(11): 1295-1303, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-29223156

RESUMO

In the aerobic methanotrophic bacteria Methylomicrobium alcaliphilum 20Z, Methylococcus capsulatus Bath, and Methylosinus trichosporium OB3b, the biochemical properties of hydroxypyruvate reductase (Hpr), an indicator enzyme of the serine pathway for assimilation of reduced C1-compounds, were comparatively analyzed. The recombinant Hpr obtained by cloning and heterologous expression of the hpr gene in Escherichia coli catalyzed NAD(P)H-dependent reduction of hydroxypyruvate or glyoxylate, but did not catalyze the reverse reactions of D-glycerate or glycolate oxidation. The absence of the glycerate dehydrogenase activity in the methanotrophic Hpr confirmed a key role of the enzyme in utilization of C1-compounds via the serine cycle. The enzyme from Ms. trichosporium OB3b realizing the serine cycle as a sole assimilation pathway had much higher special activity and affinity in comparison to Hpr from Mm. alcaliphilum 20Z and Mc. capsulatus Bath assimilating carbon predominantly via the ribulose monophosphate (RuMP) cycle. The hpr gene was found as part of gene clusters coding the serine cycle enzymes in all sequenced methanotrophic genomes except the representatives of the Verrucomicrobia phylum. Phylogenetic analyses revealed two types of Hpr: (i) Hpr of methanotrophs belonging to the Gammaproteobacteria class, which use the serine cycle along with the RuMP cycle, as well as of non-methylotrophic bacteria belonging to the Alphaproteobacteria class; (ii) Hpr of methylotrophs from Alpha- and Betaproteobacteria classes that use only the serine cycle and of non-methylotrophic representatives of Betaproteobacteria. The putative role and origin of hydroxypyruvate reductase in methanotrophs are discussed.


Assuntos
Hidroxipiruvato Redutase/classificação , Methylococcaceae/enzimologia , Methylosinus/enzimologia , Filogenia , Alphaproteobacteria , Gammaproteobacteria , Bactérias Aeróbias Gram-Negativas/classificação , Bactérias Aeróbias Gram-Negativas/enzimologia , Hidroxipiruvato Redutase/metabolismo , Methylobacillus , Methylobacteriaceae , Methylophilaceae , Serina/metabolismo
8.
Sci Adv ; 3(5): e1700041, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28580426

RESUMO

Methylmercury (CH3Hg+) is a potent neurotoxin produced by certain anaerobic microorganisms in natural environments. Although numerous studies have characterized the basis of mercury (Hg) methylation, no studies have examined CH3Hg+ degradation by methanotrophs, despite their ubiquitous presence in the environment. We report that some methanotrophs, such as Methylosinus trichosporium OB3b, can take up and degrade CH3Hg+ rapidly, whereas others, such as Methylococcus capsulatus Bath, can take up but not degrade CH3Hg+. Demethylation by M. trichosporium OB3b increases with increasing CH3Hg+ concentrations but was abolished in mutants deficient in the synthesis of methanobactin, a metal-binding compound used by some methanotrophs, such as M. trichosporium OB3b. Furthermore, addition of methanol (>5 mM) as a competing one-carbon (C1) substrate inhibits demethylation, suggesting that CH3Hg+ degradation by methanotrophs may involve an initial bonding of CH3Hg+ by methanobactin followed by cleavage of the C-Hg bond in CH3Hg+ by the methanol dehydrogenase. This new demethylation pathway by methanotrophs indicates possible broader involvement of C1-metabolizing aerobes in the degradation and cycling of toxic CH3Hg+ in the environment.


Assuntos
Compostos de Metilmercúrio/metabolismo , Methylococcus capsulatus/metabolismo , Methylosinus/metabolismo , Imidazóis/metabolismo , Metanol/metabolismo , Oligopeptídeos/metabolismo
9.
Folia Microbiol (Praha) ; 62(5): 381-391, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28275945

RESUMO

Aerobic methane-oxidizing bacteria (MOB) are an environmentally significant group of microorganisms due to their role in the global carbon cycle. Research conducted over the past few decades has increased the interest in discovering novel genera of methane-degrading bacteria, which efficiently utilize methane and decrease the global warming effect. Moreover, methanotrophs have more promising applications in environmental bioengineering, biotechnology, and pharmacy. The investigations were undertaken to recognize the variety of endophytic methanotrophic bacteria associated with Carex nigra, Vaccinium oxycoccus, and Eriophorum vaginatum originating from Moszne peatland (East Poland). Methanotrophic bacteria were isolated from plants by adding sterile fragments of different parts of plants (roots and stems) to agar mineral medium (nitrate mineral salts (NMS)) and incubated at different methane values (1-20% CH4). Single colonies were streaked on new NMS agar media and, after incubation, transferred to liquid NMS medium. Bacterial growth dynamics in the culture solution was studied by optical density-OD600 and methane consumption. Changes in the methane concentration during incubation were controlled by the gas chromatography technique. Characterization of methanotrophs was made by fluorescence in situ hybridization (FISH) with Mg705 and Mg84 for type I methanotrophs and Ma450 for type II methanotrophs. Identification of endophytes was performed after 16S ribosomal RNA (rRNA) and mmoX gene amplification. Our study confirmed the presence of both types of methanotrophic bacteria (types I and II) with the predominance of type I methanotrophs. Among cultivable methanotrophs, there were different strains of the genus Methylomonas and Methylosinus. Furthermore, we determined the potential of the examined bacteria for methane oxidation, which ranged from 0.463 ± 0.067 to 5.928 ± 0.169 µmol/L CH4/mL/day.


Assuntos
Cyperaceae/microbiologia , Endófitos/isolamento & purificação , Metano/metabolismo , Methylomonas/isolamento & purificação , Methylosinus/isolamento & purificação , Vaccinium/microbiologia , Técnicas Bacteriológicas , Cromatografia Gasosa , Meios de Cultura/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Endófitos/classificação , Endófitos/crescimento & desenvolvimento , Endófitos/metabolismo , Hibridização in Situ Fluorescente , Methylomonas/classificação , Methylomonas/crescimento & desenvolvimento , Methylomonas/metabolismo , Methylosinus/classificação , Methylosinus/crescimento & desenvolvimento , Methylosinus/metabolismo , Polônia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
10.
J Biosci Bioeng ; 123(4): 466-473, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-27939869

RESUMO

Ammonium (NH4+) is not only nitrogen source that can support methanotrophic growth, but also it can inhibit methane (CH4) oxidation by competing with CH4 for the active site of methane monooxygenase. NH4+ conversion and its feedback effect on the growth and activity of methanotrophs were evaluated with Methylosinus sporium used as a model methanotroph. Nitrogen sources could affect the CH4-derived carbon distribution, which varied with incubation time and nitrogen concentrations. More CH4-derived carbon was incorporated into biomass in the media with NH4+-N, compared to nitrate-nitrogen (NO3--N), as sole nitrogen source at the nitrogen concentrations of 10-18 mmol L-1. Although ammonia (NH3) oxidation activity of methanotrophs was considerably lower, only accounting for 0.01-0.06% of CH4 oxidation activity in the experimental cultures, NH4+ conversion could lead to the pH decrease and toxic intermediates accumulation in the their habits. Compared with NH4+, nitrite (NO2-) accumulation in the NH4+ conversion of methanotroph had stronger inhibition on its activity, especially the joint inhibition of NO2- accumulation and the pH decrease during the NH4+-N conversion. These results suggested that more attention should be paid to the feedback effects of NH4+ conversion by methanotrophs to understand effects of NH4+ on CH4 oxidation in the environments.


Assuntos
Compostos de Amônio/metabolismo , Retroalimentação Fisiológica , Metano/metabolismo , Methylosinus/metabolismo , Amônia/metabolismo , Ligação Competitiva , Biomassa , Domínio Catalítico , Concentração de Íons de Hidrogênio , Methylosinus/enzimologia , Methylosinus/crescimento & desenvolvimento , Nitratos/metabolismo , Nitritos/metabolismo , Nitrogênio/metabolismo , Oxirredução , Oxigenases/química , Oxigenases/metabolismo
11.
J Microbiol Biotechnol ; 26(12): 2098-2105, 2016 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-27666984

RESUMO

Massive reserves of methane (CH4) remain unexplored as a feedstock for the production of liquid fuels and chemicals, mainly because of the lack of economically suitable and sustainable strategies for selective oxidation of CH4 to methanol. The present study demonstrates the bioconversion of CH4 to methanol mediated by Type I methanotrophs, such as Methylomicrobium album and Methylomicrobium alcaliphilum. Furthermore, immobilization of a Type II methanotroph, Methylosinus sporium, was carried out using different encapsulation methods, employing sodium-alginate (Na-alginate) and silica gel. The encapsulated cells demonstrated higher stability for methanol production. The optimal pH, temperature, and agitation rate were determined to be pH 7.0, 30°C, and 175 rpm, respectively, using inoculum (1.5 mg of dry cell mass/ml) and 20% of CH4 as a feed. Under these conditions, maximum methanol production (3.43 and 3.73 mM) by the encapsulated cells was recorded. Even after six cycles of reuse, the Na-alginate and silica gel encapsulated cells retained 61.8% and 51.6% of their initial efficiency for methanol production, respectively, in comparison with the efficiency of 11.5% observed in the case of free cells. These results suggest that encapsulation of methanotrophs is a promising approach to improve the stability of methanol production.


Assuntos
Microbiologia Industrial/métodos , Metano/metabolismo , Metanol/metabolismo , Methylosinus/metabolismo , Alginatos/química , Ácido Glucurônico/química , Ácidos Hexurônicos/química , Concentração de Íons de Hidrogênio , Methylosinus/química , Temperatura
12.
J Am Chem Soc ; 138(35): 11124-7, 2016 09 07.
Artigo em Inglês | MEDLINE | ID: mdl-27527063

RESUMO

Methanobactins (Mbns) are a growing family of ribosomally produced, post-translationally modified natural products. Characteristic nitrogen-containing heterocycles and neighboring thioamides allow these compounds to bind copper with high affinity. Genome mining has enabled the identification of Mbn operons in bacterial genomes and the prediction of diverse Mbn structures from operon content and precursor peptide sequence. Here we report the characterization of Mbn from Methylosinus (Ms.) species (sp.) LW4. The peptide backbone is distinct from all previously characterized Mbns, and the post-translational modifications correspond precisely to those predicted on the basis of the Ms. sp. LW4 Mbn operon. Thus, prediction based on genome analysis combined with isolation and structural characterization represents a phylogenetic approach to finding diverse Mbns and elucidating their biosynthetic pathways.


Assuntos
Imidazóis/química , Imidazóis/metabolismo , Methylosinus/metabolismo , Oligopeptídeos/química , Oligopeptídeos/metabolismo , Methylosinus/genética , Oligopeptídeos/genética , Óperon/genética , Processamento de Proteína Pós-Traducional
13.
Bioresour Technol ; 218: 202-8, 2016 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27371792

RESUMO

Raw biogas can be an alternative feedstock to pure methane (CH4) for methanol production. In this investigation, we evaluated the methanol production potential of Methylosinus sporium from raw biogas originated from an anaerobic digester. Furthermore, the roles of different gases in methanol production were investigated using synthetic gas mixtures of CH4, carbon dioxide (CO2), and hydrogen (H2). Maximum methanol production was 5.13, 4.35, 6.28, 7.16, 0.38, and 0.36mM from raw biogas, CH4:CO2, CH4:H2, CH4:CO2:H2, CO2, and CO2:H2, respectively. Supplementation of H2 into raw biogas increased methanol production up to 3.5-fold. Additionally, covalent immobilization of M. sporium on chitosan resulted in higher methanol production from raw biogas. This study provides a suitable approach to improve methanol production using low cost raw biogas as a feed containing high concentrations of H2S (0.13%). To our knowledge, this is the first report on methanol production from raw biogas, using immobilized cells of methanotrophs.


Assuntos
Dióxido de Carbono/química , Hidrogênio/química , Metano/química , Metanol/química , Anaerobiose , Biocombustíveis , Biotecnologia , Gases , Methylosinus
14.
Isotopes Environ Health Stud ; 52(3): 185-202, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-26513269

RESUMO

The non-linear dynamics of stable carbon and hydrogen isotope signatures during methane oxidation by the methanotrophic bacteria Methylosinus sporium strain 5 (NCIMB 11126) and Methylocaldum gracile strain 14 L (NCIMB 11912) under copper-rich (8.9 µM Cu(2+)), copper-limited (0.3 µM Cu(2+)) or copper-regular (1.1 µM Cu(2+)) conditions has been described mathematically. The model was calibrated by experimental data of methane quantities and carbon and hydrogen isotope signatures of methane measured previously in laboratory microcosms reported by Feisthauer et al. [ 1 ] M. gracile initially oxidizes methane by a particulate methane monooxygenase and assimilates formaldehyde via the ribulose monophosphate pathway, whereas M. sporium expresses a soluble methane monooxygenase under copper-limited conditions and uses the serine pathway for carbon assimilation. The model shows that during methane solubilization dominant carbon and hydrogen isotope fractionation occurs. An increase of biomass due to growth of methanotrophs causes an increase of particulate or soluble monooxygenase that, in turn, decreases soluble methane concentration intensifying methane solubilization. The specific maximum rate of methane oxidation υm was proved to be equal to 4.0 and 1.3 mM mM(-1) h(-1) for M. sporium under copper-rich and copper-limited conditions, respectively, and 0.5 mM mM(-1) h(-1) for M. gracile. The model shows that methane oxidation cannot be described by traditional first-order kinetics. The kinetic isotope fractionation ceases when methane concentrations decrease close to the threshold value. Applicability of the non-linear model was confirmed by dynamics of carbon isotope signature for carbon dioxide that was depleted and later enriched in (13)C. Contrasting to the common Rayleigh linear graph, the dynamic curves allow identifying inappropriate isotope data due to inaccurate substrate concentration analyses. The non-linear model pretty adequately described experimental data presented in the two-dimensional plot of hydrogen versus carbon stable isotope signatures.


Assuntos
Isótopos de Carbono , Deutério , Metano/metabolismo , Methylococcaceae/metabolismo , Methylosinus/metabolismo , Modelos Biológicos , Oxigenases/metabolismo , Aerobiose , Cobre/metabolismo , Cinética , Methylococcaceae/enzimologia , Methylosinus/enzimologia , Dinâmica não Linear , Oxirredução
15.
Environ Technol ; 36(5-8): 983-91, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25267420

RESUMO

Methane in a simulated biogas converting to methanol under aerobic condition was comparatively assessed by inhibiting the activity of methanol dehydrogenase (MDH) of Methylosinus sporium using phosphate, NaCl, NH4Cl or EDTA in their varying concentrations. The highest amount of methane was indistinguishably diverted at the typical conditions regardless of the types of inhibitors: 35°C and pH 7 under a 0.4% (v/v) of biogas, specifically for <40 mM phosphate, 50 mM NaCl, 40 mM NH4Cl or 150 µM EDTA. The highest level of methanol was obtained for the addition of 40 mM phosphate, 100 mM NaCl, 40 mM NH4Cl or 50 µM EDTA. In other words, 0.71, 0.60, 0.66 and 0.66 mmol methanol was correspondingly generated by the oxidation of 1.3, 0.67, 0.74 and 1.3 mmol methane. It gave a methanol conversion rate of 54.7%, 89.9%, 89.6% and 47.8%, respectively. Among them, the maximum rate of methanol production was observed at 6.25 µmol/mg h for 100 mM NaCl. Regardless of types or concentrations of inhibitors differently used, methanol production could be nonetheless identically maximized when the MDH activity was limitedly hampered by up to 35%.


Assuntos
Oxirredutases do Álcool/antagonistas & inibidores , Metanol/metabolismo , Methylosinus/enzimologia , Cloreto de Amônio/química , Biocombustíveis , Ácido Edético/química , Concentração de Íons de Hidrogênio , Oxirredução , Cloreto de Sódio/química , Temperatura
16.
Mikrobiologiia ; 83(1): 109-18, 2014.
Artigo em Russo | MEDLINE | ID: mdl-25436252

RESUMO

Methanotrophs closely related to psychrotolerant members of the genera Methylobacter and Methylocella were identified in cultures enriched at 10@C from landfill cover soil samples collected in the period from April to November. Mesophilic methanotrophs of the genera Methylobacter and Methylosinus were found in cultures enriched at 20 degrees C from the same cover soil samples. A thermotolerant methanotroph related to Methylocaldum gracile was identified in the culture enriched at 40 degrees C from a sample collected in May (the temperature of the cover soil was 11.5-12.5 degrees C). In addition to methanotrophs, methylobacteria of the genera Methylotenera and Methylovorus and members of the genera Verrucomicrobium, Pseudomonas, Pseudoxanthomonas, Dokdonella, Candidatus Protochlamydia, and Thiorhodospira were also identified in the enrichment cultures. A methanotroph closely related to the psychrotolerant species Methylobacter tundripaludum (98% sequence identity of 16S r-RNA genes with the type strain SV96(T)) was isolated in pure culture. The introduction of a mixture of the methanotrophic enrichments, grown at 15 degrees C, into the landfill cover soil resulted in a decrease in methane emission from the landfill surface in autumn (October, November). The inoculum used was demonstrated to contain methanotrophs closely related to Methylobacter tundripaludum SV96.


Assuntos
Microbiologia do Solo , Instalações de Eliminação de Resíduos , Ectothiorhodospiraceae/genética , Ectothiorhodospiraceae/isolamento & purificação , Metano/metabolismo , Methylococcaceae/isolamento & purificação , Methylophilaceae/genética , Methylophilaceae/isolamento & purificação , Methylosinus/genética , Methylosinus/isolamento & purificação , Filogenia , Pseudomonas/genética , Pseudomonas/isolamento & purificação , RNA Ribossômico 16S , Estações do Ano , Temperatura
17.
Water Res ; 67: 46-54, 2014 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-25261627

RESUMO

Biological methane biodegradation is a promising treatment alternative when the methane produced in waste management facilities cannot be used for energy generation. Two-phase partitioning bioreactors (TPPBs), provided with a non-aqueous phase (NAP) with high affinity for the target pollutant, are particularly suitable for the treatment of poorly water-soluble compounds such as methane. Nevertheless, little is known about the influence of the presence of the NAP on the resulting biodegradation kinetics in TPPBs. In this study, an experimental framework based on the in situ pulse respirometry technique was developed to assess the impact of NAP addition on the methane biodegradation kinetics using Methylosinus sporium as a model methane-degrading microorganism. A comprehensive mass transfer characterization was performed in order to avoid mass transfer limiting scenarios and ensure a correct kinetic parameter characterization. The presence of the NAP mediated significant changes in the apparent kinetic parameters of M. sporium during methane biodegradation, with variations of 60, 120, and 150% in the maximum oxygen uptake rate, half-saturation constant and maximum specific growth rate, respectively, compared with the intrinsic kinetic parameters retrieved from a control without NAP. These significant changes in the kinetic parameters mediated by the NAP must be considered for the design, operation and modeling of TPPBs devoted to air pollution control.


Assuntos
Poluição do Ar/prevenção & controle , Reatores Biológicos , Metano/metabolismo , Methylosinus/metabolismo , Biodegradação Ambiental/efeitos dos fármacos , Cinética , Consumo de Oxigênio/fisiologia , Óleos de Silicone/farmacologia
18.
PLoS One ; 9(4): e94641, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24743729

RESUMO

Methane emitted by coal mine ventilation air (MVA) is a significant greenhouse gas. A mitigation strategy is the oxidation of methane to carbon dioxide, which is approximately twenty-one times less effective at global warming than methane on a mass-basis. The low non-combustible methane concentrations at high MVA flow rates call for a catalytic strategy of oxidation. A laboratory-scale coal-packed biofilter was designed and partially removed methane from humidified air at flow rates between 0.2 and 2.4 L min-1 at 30°C with nutrient solution added every three days. Methane oxidation was catalysed by a complex community of naturally-occurring microorganisms, with the most abundant member being identified by 16S rRNA gene sequence as belonging to the methanotrophic genus Methylocystis. Additional inoculation with a laboratory-grown culture of Methylosinus sporium, as investigated in a parallel run, only enhanced methane consumption during the initial 12 weeks. The greatest level of methane removal of 27.2±0.66 g methane m-3 empty bed h-1 was attained for the non-inoculated system, which was equivalent to removing 19.7±2.9% methane from an inlet concentration of 1% v/v at an inlet gas flow rate of 1.6 L min-1 (2.4 min empty bed residence time). These results show that low-cost coal packing holds promising potential as a suitable growth surface and contains methanotrophic microorganisms for the catalytic oxidative removal of methane.


Assuntos
Carvão Mineral , Filtração/métodos , Efeito Estufa , Metano/isolamento & purificação , Metano/metabolismo , Methylosinus/metabolismo , Ventilação , Poluentes Atmosféricos/isolamento & purificação , Poluentes Atmosféricos/metabolismo , Biodegradação Ambiental , Dióxido de Carbono/metabolismo , Oxirredução
19.
FEMS Microbiol Ecol ; 88(1): 195-212, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24410836

RESUMO

Methane emissions, along with methanotrophs and methanogens and soil chemical properties, were investigated in a flooded rice ecosystem. Methane emission increased after rice transplantation (from 7.2 to 552 mg day(-1) m(-2) ) and was positively and significantly correlated with transcripts of pmoA and mcrA genes, transcript/gene ratios of mcrA, temperature and total organic carbon. Methane flux was negatively correlated with sulfate concentration. Methanotrophs represented only a small proportion (0.79-1.75%) of the total bacterial 16S rRNA gene reads: Methylocystis (type II methanotroph) decreased rapidly after rice transplantation, while Methylosinus and unclassified Methylocystaceae (type II) were relatively constant throughout rice cultivation. Methylocaldum, Methylobacter, Methylomonas and Methylosarcina (type I) were sparse during the early period, but they increased after 60 days, and their maximum abundances were observed at 90-120 days. Of 33 218 archaeal reads, 68.3-86.6% were classified as methanogens. Methanosaeta, Methanocella, Methanosarcina and Methanobacterium were dominant methanogens, and their maximum abundances were observed at days 60-90. Only four reads were characteristic of anaerobic methanotrophs, suggesting that anaerobic methane metabolism is negligible in this rice paddy system. After completing a multivariate canonical correspondence analysis of our integrated data set, we found normalized mcrA/pmoA transcript ratios to be a promising parameter for predicting net methane fluxes emitted from rice paddy soils.


Assuntos
Euryarchaeota/classificação , Metano/metabolismo , Methylococcaceae/metabolismo , Methylocystaceae/metabolismo , Methylosinus/metabolismo , Oryza , Microbiologia do Solo , DNA Arqueal/genética , DNA Bacteriano/genética , Euryarchaeota/metabolismo , Methylococcaceae/genética , Methylocystaceae/genética , Methylosinus/genética , Oxigenases/genética , Oxigenases/metabolismo , Polimorfismo de Fragmento de Restrição , RNA Ribossômico 16S/genética , RNA Ribossômico 16S/metabolismo
20.
Arch Microbiol ; 195(10-11): 717-26, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24037422

RESUMO

Methanotrophs are widespread and have been isolated from various environments including the phyllosphere. In this study, we characterized the plant colonization by Methylosinus sp. B4S, an α-proteobacterial methanotroph isolated from plant leaf. The gfp-tagged Methylosinus sp. B4S cells were observed to colonize Arabidopsis leaf surfaces by forming aggregates. We cloned and sequenced the general stress response genes, phyR, nepR and ecfG, from Methylosinus sp. B4S. In vitro analysis showed that the phyR expression level was increased after heat shock challenge, and phyR was shown to be involved in resistance to heat shock and UV light. In the phyllospheric condition, the gene expression level of phyR as well as mmoX and mxaF was found to be relatively high, compared with methane-grown liquid cultures. The phyR-deletion strain as well as the wild-type strain inoculated on Arabidopsis leaves proliferated at the initial phase and then gradually decreased during plant colonization. These results have shed light firstly on the importance of general stress resistance and C1 metabolism in methanotroph living in the phyllosphere.


Assuntos
Arabidopsis/microbiologia , Methylosinus/crescimento & desenvolvimento , Folhas de Planta/microbiologia , Proteobactérias/crescimento & desenvolvimento , Carbono/metabolismo , Clonagem Molecular , Deleção de Genes , Expressão Gênica , Genes Bacterianos , Resposta ao Choque Térmico , Metano/metabolismo , Methylosinus/genética , Methylosinus/metabolismo , Dados de Sequência Molecular , Proteobactérias/genética , Proteobactérias/metabolismo , Raios Ultravioleta
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