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1.
J Appl Toxicol ; 38(5): 724-733, 2018 05.
Artigo em Inglês | MEDLINE | ID: mdl-29315700

RESUMO

Six chemical warfare agent simulants (trimethyl phosphate, dimethyl adipate, 2-chloroethyl methyl sulfide, diethyl adipate, chloroethyl phenyl sulfide and diethyl sebacate) were studied in in vitro human skin to explore relationship between dermal penetration/absorption and the mechanisms of simulant partitioning between stratum corneum (SC) and water as well as between dermal decontamination gel (DDGel) and water. Both binding affinity to and decontamination of simulants using DDGel were studied. Partition coefficients of six simulants between SC and water (Log PSC/w ) and between DDGel and water (Log PDDGel/w ) were determined. Results showed that DDGel has a similar or higher binding affinity to each simulant compared to SC. The relationship between Log P octanol/water and Log PSC/w as well as between Log P octanol/water and Log PDDGel/w demonstrated that partition coefficient of simulants correlated to their lipophilicity or hydrophilicity. Decontamination efficiency results with DDGel for these simulants were consistent with binding affinity results. Amounts of percentage dose of chemicals in DDGel of trimethyl phosphate, dimethyl adipate, 2-chloroethyl methyl sulfide, diethyl adipate, chloroethyl phenyl sulfide and diethyl sebacate were determined to be 61.15, 85.67, 75.91, 53.53, 89.89 and 76.58, with corresponding amounts absorbed in skin of 0.96, 0.65, 1.68, 0.72, 0.57 and 1.38, respectively. In vitro skin decontamination experiments coupled with a dermal absorption study demonstrated that DDGel can efficiently remove chemicals from skin surface, back-extract from the SC, and significantly reduced chemical penetration into skin or systemic absorption for all six simulants tested. Therefore, DDGel offers a great potential as a NextGen skin Decon platform technology for both military and civilian use.


Assuntos
Substâncias para a Guerra Química , Descontaminação/métodos , Administração Cutânea , Adulto , Ácidos Decanoicos/antagonistas & inibidores , Dimetil Adipimidato/antagonistas & inibidores , Géis , Humanos , Técnicas In Vitro , Organofosfatos/antagonistas & inibidores , Pele/efeitos dos fármacos , Absorção Cutânea/efeitos dos fármacos , Sulfetos/antagonistas & inibidores , Água/metabolismo
2.
Sci Rep ; 5: 14127, 2015 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-26370251

RESUMO

Sample processing, especially that involving nucleic acid extraction, is a prerequisite step for the isolation of high quantities of relatively pure DNA for downstream analyses in many life science and biomedical engineering studies. However, existing methods still have major problems, including labor-intensive time-consuming methods and high costs, as well as requirements for a centrifuge and the complex fabrication of filters and membranes. Here, we first report a versatile Dimethyl adipimidate/Thin film based Sample processing (DTS) procedure without the limitations of existing methods. This procedure is useful for the extraction of DNA from a variety of sources, including 6 eukaryotic cells, 6 bacteria cells, and 2 body fluids in a single step. Specifically, the DTS procedure does not require a centrifuge and has improved time efficiency (30 min), affordability, and sensitivity in downstream analysis. We validated the DTS procedure for the extraction of DNA from human body fluids, as well as confirmed that the quality and quantity of the extracted DNA were sufficient to allow robust detection of genetic and epigenetic biomarkers in downstream analysis.


Assuntos
DNA/isolamento & purificação , Dimetil Adipimidato/química , Animais , Líquidos Corporais , Células Eucarióticas , Humanos , Dispositivos Lab-On-A-Chip
3.
Lab Chip ; 14(2): 359-68, 2014 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-24263404

RESUMO

Here, we present a silicon microfluidic system for the purification and extraction of nucleic acids from human body fluid samples utilizing a dimethyl adipimidate (DMA)-based solid-phase extraction method. We propose DMA, which has been used as an amino-reactive cross-linking agent within cells and proteins, as a non-chaotropic reagent for the capture of nucleic acids to overcome the limitations of existing chaotropic and non-chaotropic techniques such as low binding efficiency, PCR inhibition and so on. DMA contains bi-functional imidoesters that form reversible cross-linking structures with DNA therefore providing a high surface-area to volume ratio for capturing DNA without structurally modifying microfluidic channels. In this work, we have first demonstrated highly efficient capture and purification of genomic DNA (T24 cell line) with DMA using a label-free silicon microring resonator sensor device. In addition, we observed the improvement of the DNA amplification efficiency by using the proposed technique for both the genetic (HRAS) and epigenetic (RARß) analysis of DNA biomarkers. Particularly, we confirmed that the DMA-based solid-phase extraction technique can be applied for the extraction of genomic DNA with higher purity (p < 0.001) using human body fluids (blood and urine) in silicon microfluidic devices compared to other chaotropic methods. Therefore, the proposed technique would be able to harmonize with a micro-total analysis system platform for the analysis of genetic and epigenetic DNA biomarkers related to human diseases in the field of point-of-care (POC) diagnostic applications.


Assuntos
Dimetil Adipimidato/química , Técnicas Analíticas Microfluídicas/instrumentação , Ácidos Nucleicos/isolamento & purificação , Sequência de Bases , Primers do DNA , Epigênese Genética
4.
Appl Biochem Biotechnol ; 170(1): 44-57, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23468006

RESUMO

α-Amylase catalyzes hydrolysis of starch to oligosaccharides, which are further degraded to simple sugars. The enzyme has been widely used in food and textile industries and recently, in generation of renewable energy. An α-amylase from yeast Saccharomycopsis fibuligera R64 (Sfamy) is active at 50 °C and capable of degrading raw starch, making it attractive for the aforementioned applications. To improve its characteristics as well as to provide information for structural study ab initio, the enzyme was chemically modified by acid anhydrides (nonpolar groups), glyoxylic acid (GA) (polar group), dimethyl adipimidate (DMA) (cross-linking), and polyethylene glycol (PEG) (hydrophilization). Introduction of nonpolar groups increased enzyme stability up to 18 times, while modification by a cross-linking agent resulted in protection of the calcium ion, which is essential for enzyme activity and integrity. The hydrophilization with PEG resulted in protection against tryptic digestion. The chemical modification of Sfamy by various modifiers has thereby resulted in improvement of its characteristics and provided systematic information beneficial for structural study of the enzyme. An in silico structural study of the enzyme improved the interpretation of the results.


Assuntos
Proteínas Fúngicas/química , Engenharia de Proteínas/métodos , Saccharomycopsis/química , alfa-Amilases/química , Anidridos Acéticos/química , Sequência de Aminoácidos , Quelantes/química , Reagentes de Ligações Cruzadas/química , Dimetil Adipimidato/química , Estabilidade Enzimática , Glioxilatos/química , Temperatura Alta , Hidrólise , Modelos Moleculares , Dados de Sequência Molecular , Polietilenoglicóis/química , Proteólise , Saccharomycopsis/enzimologia , Amido/metabolismo
5.
Cell Physiol Biochem ; 17(3-4): 121-8, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16543728

RESUMO

In red cells from normal individuals (HbA cells), the K+-Cl- cotransporter (KCC) is inactivated by low O2 tension whilst in those from sickle cell patients (HbS cells), it remains fully active. Changes in free intracellular [Mg2+] have been proposed as a mechanism. In HbA cells, KCC activity was stimulated by Mg2+ depletion and inhibited by Mg2+ loading but the effect of O2 was independent of Mg2+. At all [Mg2+]is, the transporter was stimulated in oxygenated cells, minimally active in deoxygenated ones. By contrast, the stimulatory effects of O2 was abolished by inhibitors of protein (de)phosphorylation. HbS cells had elevated KCC activity, which was of similar magnitude in oxygenated and deoxygenated cells, regardless of Mg2+ clamping. In deoxygenated cells, the antisickling agent dimethyl adipimidate inhibited sickling, Psickle and KCC. Results indicate a role for protein phosphorylation in O2 dependence of KCC, with different activities of the relevant enzymes in HbA and HbS cells, probably dependent on Hb.


Assuntos
Eritrócitos Anormais/metabolismo , Eritrócitos/metabolismo , Magnésio/sangue , Oxigênio/fisiologia , Simportadores/metabolismo , Anemia Falciforme/sangue , Antidrepanocíticos/farmacologia , Dimetil Adipimidato/farmacologia , Inibidores Enzimáticos/farmacologia , Etilmaleimida/farmacologia , Humanos , Manometria , Toxinas Marinhas , Oxazóis/farmacologia , Oxigênio/sangue
6.
Nucleic Acids Res ; 33(21): 6782-94, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-16321965

RESUMO

HOX proteins are important transcriptional regulators in mammalian embryonic development and are dysregulated in human cancers. However, there are few known direct HOX target genes and their mechanisms of regulation are incompletely understood. To isolate and characterize gene segments through which HOX proteins regulate transcription we used cesium chloride centrifugation-based chromatin purification and immunoprecipitation (ChIP). From NIH 3T3-derived HOXA13-FLAG expressing cells, 33% of randomly selected, ChIP clones were reproducibly enriched. Hox-enriched fragments (HEFs) were more AT-rich compared with cloned fragments that failed reproducible ChIP. All HEFs augmented transcription of a heterologous promoter upon coexpression with HOXA13. One HEF was from intron 2 of Enpp2, a gene highly upregulated in these cells and has been implicated in cell motility. Using Enpp2 as a candidate direct target, we identified three additional HEFs upstream of the transcription start site. HOXA13 upregulated transcription from an Enpp2 promoter construct containing these sites, and each site was necessary for full HOXA13-induced expression. Lastly, given that HOX proteins have been demonstrated to interact with histone deacetylases and/or CBP, we explored whether histone acetylation changed at Enpp2 upon HOXA13-induced activation. No change in the general histone acetylation state was observed. Our results support models in which occupation of multiple HOX binding sites is associated with highly activated genes.


Assuntos
Proteínas de Homeodomínio/metabolismo , Elementos de Resposta , Ativação Transcricional , Acetilação , Animais , Sítios de Ligação , Césio/química , Cloretos/química , Cromatina/isolamento & purificação , Imunoprecipitação da Cromatina , Reagentes de Ligações Cruzadas/química , Dimetil Adipimidato/química , Genes Reporter , Genômica , Histonas/metabolismo , Camundongos , Complexos Multienzimáticos/genética , Células NIH 3T3 , Fosfodiesterase I/genética , Diester Fosfórico Hidrolases , Pirofosfatases/genética , Regulação para Cima
7.
Br J Haematol ; 120(5): 894-902, 2003 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-12614227

RESUMO

The hereditary stomatocytoses are a group of dominant haemolytic anaemias that show two main features: invaginated, 'stomatocytic' morphology; and a membrane leak to the univalent cations Na and K. A patient with the most severe variant of these conditions was reported to show a defect in an in vitro process of ATP-dependent endocytic vesiculation (ADEV), which is found in normal red cells. We have examined this endocytosis process in 11 leaky red cell pedigrees available to us in the UK. ADEV in broken membranes was absent only in the two most severely affected, 'overhydrated' pedigrees studied, both of which showed a deficiency in the membrane raft protein, stomatin. The process was present, although typically diminished by about 10-20% compared with normal red cells, in all others. The cross-linker dimethyl adipimate (DMA), which could correct the cation leak in some of these patients, also corrected the ADEV defect in the same patients. In those patients in whom DMA had no effect on the ion leak, ADEV was not absent. In normal cells, this process of vesiculation was inhibited by inhibitors of membrane 'raft' function, by an antistomatin antibody and by vanadate and N-ethyl maleimide, but not by inhibitors of a number of kinases. These data highlight the heterogeneity of these conditions. A mechanism is discussed by which a defect in raft-based endocytosis could lead to the exaggerated surface exposure of an ion channel, which could then function constitutively, i.e. 'leak'.


Assuntos
Trifosfato de Adenosina/metabolismo , Anemia Hemolítica/genética , Membrana Eritrocítica/metabolismo , Anemia Hemolítica/sangue , Cátions , Vesículas Citoplasmáticas , Dimetil Adipimidato/farmacologia , Relação Dose-Resposta a Droga , Endocitose/genética , Humanos , Indicadores e Reagentes/farmacologia
8.
Biochem Biophys Res Commun ; 293(3): 958-61, 2002 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-12051752

RESUMO

A well-defined bovine polyhemoglobin was prepared by dimethyl adipimidate (DMA) and glutaraldehyde double cross-linkage method. DMA was used to block some amino groups of hemoglobin, followed by further polymerization with glutaraldehyde. The amino modification degree of hemoglobin was 32% when DMA reacted with hemoglobin at the molar ratio of 200. The bovine polyhemoglobin with narrow molecular weight distribution (mainly 128 kDa) was obtained when glutaraldehyde reacted with DMA-modified hemoglobin. The P(50) and the Hill coefficient for DMA-modified hemoglobin were 19.4 mm Hg and 2.28, respectively, while those for the bovine polyhemoglobin were 15.1 mm Hg and 1.70, respectively. The number of Bohr protons released for DMA-modified hemoglobin and the polyhemoglobin was 0.86 and 0.56 H/tetramer, respectively.


Assuntos
Substitutos Sanguíneos/química , Reagentes de Ligações Cruzadas/química , Dimetil Adipimidato/química , Glutaral/química , Hemoglobinas/química , Animais , Substitutos Sanguíneos/metabolismo , Bovinos , Eletroforese em Gel de Poliacrilamida , Hemoglobinas/metabolismo , Concentração de Íons de Hidrogênio , Oxigênio/metabolismo
9.
FEBS Lett ; 480(2-3): 179-83, 2000 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-11034324

RESUMO

Dimethyl adipimidate (DMA) reduces K+ loss from, and dehydration of, red cells containing haemoglobin S (HbS cells). Three membrane transporters may contribute to these processes: the deoxygenation-induced cation-selective channel (Psickle), the Ca2+-activated K+ channel (or Gardos channel) and the K+-CI- cotransporter (KCC). We show that DMA inhibited all three pathways in deoxygenated HbS cells. The Gardos channel could be activated following Ca2+ loading. Considerable KCC activity was present in oxygenated HbS cells, showing a selective action of DMA on the transporter in deoxygenated cells. Inhibition of sickling correlated strongly with that of Psickle and moderately with that of KCC activity. We conclude that DMA does not inhibit the K+ pathways directly, but acts mainly by preventing HbS polymerisation and sickling. These findings are relevant to the development of novel chemotherapeutic agents for amelioration of sickle cell disease.


Assuntos
Anemia Falciforme/sangue , Dimetil Adipimidato/farmacologia , Eritrócitos/efeitos dos fármacos , Potássio/metabolismo , Simportadores , Transporte Biológico , Proteínas de Transporte/metabolismo , Cátions Monovalentes , Tamanho Celular/efeitos dos fármacos , Células Cultivadas , Eritrócitos/citologia , Eritrócitos/metabolismo , Hemoglobina Falciforme , Humanos , Oxigênio/metabolismo
10.
Biochem Cell Biol ; 77(2): 89-99, 1999.
Artigo em Inglês | MEDLINE | ID: mdl-10438143

RESUMO

Formation of a hetero-oligomeric complex between Hsp70 and Hsp80 of Neurospora crassa was observed previously by means of chemical crosslinking and enzyme-linked immunosorbent assays (ELISA). The present study documents the effect of nucleotides on the subunit structure of Hsp70 and Hsp80 by crosslinking with bifunctional reagents: glutaraldehyde, dimethyl adipimidate (DMA), and dimethyl suberimidate (DMS). The inter-protomer crosslinking of Hsp80 with DMA and DMS was suppressed by ATP and to a lesser extent by ADP, CTP, and NAD. Crosslinking of purified Hsp70 by glutaraldehyde yielded dimers and higher order oligomers. Binding of ATP, ADP, CTP, and NAD, but not NADH, led to a marked reduction in the yield of oligomers. Similarly, crosslinking by DMA and DMS was suppressed by ADP, ATP, and CTP. Both Hsp70 and Hsp80 exhibited intrinsic ATPase activity. Interestingly, ATP levels exceeding 25 microM resulted in pronounced inhibition of the ATPase activity of Hsp80 and 0.5 mM and 0.25 mM ATP led to a prolonged lag in the reaction. Addition of NAD resulted in the abolition of the lag period. The binding of 2-p-toluidinylnapthalene-6-sulfonate (TNS) to Hsp70 and its displacement by ATP and other nucleotides demonstrated the hydrophobic nature of the nucleotide-binding region.


Assuntos
Proteínas Fúngicas/metabolismo , Proteínas de Choque Térmico HSP70/metabolismo , Proteínas de Choque Térmico/metabolismo , Neurospora crassa/metabolismo , Nucleotídeos/metabolismo , Adenosina Trifosfatases/metabolismo , Reagentes de Ligações Cruzadas , Citosol/metabolismo , Dimetil Adipimidato , Dimetil Suberimidato , Corantes Fluorescentes/metabolismo , Glutaral , Calefação , Hidrólise , Naftalenossulfonatos/metabolismo , Especificidade por Substrato
11.
J Physiol ; 512 ( Pt 1): 129-36, 1998 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-9729623

RESUMO

1. The predominant Cl- channel in bovine tracheal epithelial cells has a conductance of approximately 71 pS and accounts for more than 80 % of the total chloride conductance. We examined the effects of protein-modifying reagents on channel function and found that amino groups are critically involved in gating. 2. Patch clamp studies showed that lysine-specific reagents, such as dimethyl adipimidate (DMA), significantly increased the channel open probability, but not its conductance. This suggests that modified residues are involved in the gating mechanism, but are distant from the channel permeation pathway. 3. Kinetic analysis of channel activity showed that histograms of open and closed durations could be well fitted by double exponential distributions, suggesting that the channel has at least two open and two closed states. DMA did not change the number of open or closed states, but increased channel mean open time. 4. Since membrane impermeant reagents were effective only from the extracellular side, we conclude that lysine residues in the extracellular domain of the channel are critically involved in gating. These residues may present an important target for site-directed mutagenesis and pharmacological activation of Cl- channels in epithelial cells.


Assuntos
Canais de Cloreto/fisiologia , Dimetil Adipimidato/farmacologia , Traqueia/fisiologia , Animais , Bovinos , Membrana Celular/fisiologia , Canais de Cloreto/efeitos dos fármacos , Condutividade Elétrica , Células Epiteliais/efeitos dos fármacos , Células Epiteliais/fisiologia , Ativação do Canal Iônico/fisiologia , Cinética , Cadeias de Markov , Proteínas de Membrana/metabolismo , Técnicas de Patch-Clamp , Fosforilação , Espectrometria de Fluorescência
12.
J Mol Biol ; 269(4): 514-28, 1997 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-9217257

RESUMO

Transcription termination factor rho from Escherichia coli is a ring-shaped homohexamer of 419 amino acid subunits and catalyzes an ATP-dependent release of nascent RNA transcripts. Previous chemical cross-linking studies suggested that the rho hexamer might have D3 symmetry with three isologous dimers as protomers. However, our recent mutational analysis of rho alongside its putative structural homology to F1-ATPase rather argued for C6 symmetry. To resolve this discrepancy, we have re-investigated the pattern of cross-linking of rho using various cross-linkers with different functional groups and spacer lengths. Upon reaction with dimethyl suberimidate followed by SDS-polyacrylamide gel electrophoresis, rho protein generated a series of cross-linked oligomers up to hexamers, of which dimers migrated as distinct doublet bands of approximately equal intensities. However, the lower band became much stronger than the upper one with dimethyl adipimidate and difluorodinitrobenzene, and vice versa with disuccinimidyl glutarate, disuccinimidyl suberate and disulfosuccinimidyl tartarate. Furthermore, the trimeric products also produced doublet bands, whose relative intensities were again variable with cross-linkers, but in an inverse correlation with those of the dimer bands. These results combined with theoretical considerations support a C6 symmetry model in which cross-linking is assumed to occur stochastically at one of two alternative sites within each subunit interface with variable relative frequencies depending on cross-linkers. The D3 symmetry is excluded, for the putative trimeric subspecies should always retain mutually equal intensities in that case. Detailed inspections of the cross-linking kinetics further revealed a moderate characteristic of C3 symmetry for the rho hexamer such that the collective as well as relative rates of cross-linking at the two available sites could fluctuate between alternating interfaces. The final model designated as C3/6 is also compatible with other functional and structural properties known for rho.


Assuntos
Dinitrofluorbenzeno/análogos & derivados , Imidoésteres/química , Conformação Proteica , Fator Rho/química , Succinimidas/química , Reagentes de Ligações Cruzadas , Dimetil Adipimidato/química , Dimetil Suberimidato/química , Dinitrofluorbenzeno/química , Escherichia coli , Dodecilsulfato de Sódio/química , Fatores de Tempo
13.
Biochem J ; 319 ( Pt 3): 731-9, 1996 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-8920974

RESUMO

The number of the subunits in an alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)-preferring L-glutamate receptor in the synaptic junctions of porcine brain was investigated in this study. Upon incubation of the synaptic junctions with three cross-linking regents, dimethyl adipimidate (DMA), dimethyl suberimidate (DMS) and N-succinimidyl-(4-azidophenyl)-1,3'-dithiopropionate (SADP), AMPA receptor subunits in higher-molecular-mass aggregates were detected by immunoblotting. These aggregates migrated as proteins of approx. 200, 300 and 400 kDa. The number and identity of the subunits in a solubilized AMPA receptor were also investigated here. Two samples, W1 and W2, enriched in AMPA receptors were prepared from synaptic junctions by a combination of detergent-solubilization, anion-exchange chromatography and wheatgerm agglutinin affinity chromatography. Hydrodynamic behaviour analyses revealed that the majority of the AMPA receptors in either one of these samples were asymmetrical detergent-surrounded particles with a protein mass around 350 kDa. SDS/PAGE analysis revealed that the majority of AMPA receptors in the W1 sample were comprised of dimers of 106 kDa subunits which were covalently linked by disulphide bonds. Cross-linking these receptors with SADP yielded a new band of approx. 400 kDa. The results obtained here, either from the studies of AMPA receptors embedding in synaptic junctions or from those of detergent-solubilized and partially purified receptors, suggest that AMPA receptors contain a basic core structure comprising of four 106 kDa subunits.


Assuntos
Encéfalo/metabolismo , Receptores de AMPA/química , Receptores de AMPA/metabolismo , Sinapses/metabolismo , Animais , Azidas , Centrifugação com Gradiente de Concentração , Cromatografia em Gel , Reagentes de Ligações Cruzadas , Dimetil Adipimidato , Dimetil Suberimidato , Ácido Glutâmico/metabolismo , Substâncias Macromoleculares , Modelos Químicos , Peso Molecular , Ensaio Radioligante , Receptores de AMPA/isolamento & purificação , Suínos , Ácido alfa-Amino-3-hidroxi-5-metil-4-isoxazol Propiônico/metabolismo
14.
Protein Sci ; 5(2): 278-86, 1996 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8745406

RESUMO

The reverse transcriptase (RT) of the human immunodeficiency virus type 1 (HIV-1) is composed of two subunits of 66 and 51 kDa in a 1 to 1 ratio. Because dimerization is a prerequisite for enzymatic activity, interference with the dimerization process could constitute an alternative antiviral strategy for RT inhibition. Here we describe an in vitro assay for the study of the dimerization state of HIV-1 reverse transcriptase based on chemical crosslinking of the subunits with dimethylsuberimidate. Crosslinking results in the formation of covalent bonds between the subunits, so that the crosslinked species can be resolved by denaturing gel electrophoresis. Crosslinked RT species with molecular weight greater than that of the dimeric form accumulate during a 1-15-min time course. Initial evidence suggests that those high molecular weight species represent trimers and tetramers and may be the result of intramolecular crosslinking of the subunits of a higher-order RT oligomer. A peptide that corresponds to part of the tryptophan repeat motif in the connection domain of HIV-1 RT inhibits crosslink formation as well as enzymatic activity. The crosslinking assay thus allows the investigation of the effect of inhibitors on the dimerization of HIV-1 RT.


Assuntos
Antivirais/farmacologia , Reagentes de Ligações Cruzadas/farmacologia , Dimetil Adipimidato/farmacologia , Dimetil Suberimidato/farmacologia , Conformação Proteica/efeitos dos fármacos , DNA Polimerase Dirigida por RNA/química , DNA Polimerase Dirigida por RNA/efeitos dos fármacos , Inibidores da Transcriptase Reversa/farmacologia , Sequência de Aminoácidos , Transcriptase Reversa do HIV , Dados de Sequência Molecular , Peso Molecular , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/efeitos dos fármacos , Triptofano/química
15.
J Bacteriol ; 178(1): 156-62, 1996 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-8550410

RESUMO

The ToxR protein of Vibrio cholerae regulates the expression of several virulence factors that play important roles in the pathogenesis of cholera. Previous experiments with ToxR-alkaline phosphatase (ToxR-PhoA) fusion proteins suggested a model for gene regulation in which the inactive form of ToxR was a monomer and the active form of ToxR was a dimer (V. L. Miller, R. K. Taylor, and J. J. Mekalanos, Cell 48:271-279, 1987). In order to examine whether ToxR exists in a dimeric form in vivo, biochemical cross-linking analyses were carried out. Different dimeric cross-linked species were detected depending on the expression level of ToxR: when overexpressed, ToxR+ToxR homodimers and ToxR+ToxS heterodimers were detected, and when ToxR was expressed at normal levels, exclusively ToxR+ToxS heterodimers were detected. The amount of overexpression was quantitated by using ToxR-PhoA fusion proteins and was found to correspond to 2.7-fold the normal level of ToxR. The formation of both homodimeric ToxR species and heterodimeric ToxR+ToxS species is consistent with previously reported genetic data that suggested that both types of ToxR oligomeric interactions occur. However, variation in the amount of either the homodimeric or heterodimeric form detectable by this cross-linking analysis was not observed to correlate with laboratory culture conditions known to modulate ToxR activity. Thus, genetic and biochemical data indicate that ToxR is able to interact with both itself and ToxS but that these interactions may not explain mechanistically the observed changes in ToxR activity that occur in response to environmental conditions.


Assuntos
Proteínas de Bactérias , Proteínas de Ligação a DNA/química , Proteínas de Membrana , Conformação Proteica , Fatores de Transcrição/química , Vibrio cholerae/química , Fosfatase Alcalina/química , Reagentes de Ligações Cruzadas , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/fisiologia , Dimetil Adipimidato , Dissulfetos/química , Mercaptoetanol , Peso Molecular , Mutagênese Sítio-Dirigida , Proteínas Recombinantes de Fusão/biossíntese , Reagentes de Sulfidrila , Transativadores/fisiologia , Fatores de Transcrição/genética , Fatores de Transcrição/fisiologia , Vibrio cholerae/fisiologia
16.
J Immunol Methods ; 186(2): 195-204, 1995 Oct 26.
Artigo em Inglês | MEDLINE | ID: mdl-7594619

RESUMO

As part of our ongoing work to extend the range of applications of the non-isotopic carbonyl metalloimmunoassay (CMIA), previously developed in our laboratory, we describe here the first CMIA study of carbamazepine. The CMIA method uses a metal carbonyl complex as a non-isotopic tracer, and in this case we chose to employ the dicobalt hexacarbonyl moiety (Co2(CO)6) attached to an alkyne. Two organometallic tracers, 3 and 7, were synthesized, differentiated by the nature and length of the spacer arm of the Co2(CO)6 moiety. Two different coupling methods were subsequently used to synthesize the immunogens 1 and 2, the first one used a carbodiimide, while the second, employed dimethyl adipimidate as coupling agent. Titer values of the antisera obtained by injection of these immunogens into rabbits, were determined by CMIA, using one of the organometallic complexes, 3 or 7, as tracer. Both antisera had higher titer values with the long-chain tracer, 7, than with the short-chain tracer, 3. However these titer values were very different: low for antiserum 1 and high for antiserum 2. The cross-reactivity of antiserum 2 with other antiepileptic drugs was negligible. For competition curves, there was good sensitivity with the antibody 2/3 pairing, while a broad assay range was obtained with antibody 2/7 pairing. These results demonstrate the viability of CMIA as an immunoassay method for carbamazepine, and open the way to development of a simultaneous multiassay by CMIA of the principal antiepileptic drugs.


Assuntos
Anticonvulsivantes/análise , Carbamazepina/análise , Imunoensaio/métodos , Compostos Organometálicos/síntese química , Espectroscopia de Infravermelho com Transformada de Fourier , Animais , Especificidade de Anticorpos , Ligação Competitiva , Carbamazepina/imunologia , Cobalto , Reações Cruzadas , Dibenzazepinas/química , Dicicloexilcarbodi-Imida , Dimetil Adipimidato , Haptenos , Imunização , Compostos Organometálicos/análise , Coelhos
17.
Arch Biochem Biophys ; 311(1): 35-41, 1994 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-8185319

RESUMO

RNA polymerase II purified from wheat germ has been treated with a series of cleavable bifunctional reagents and the resulting crosslinked products have been analyzed by diagonal electrophoresis. The results indicate that the three largest subunits (220, 140, and 42,40 kDa, respectively) form a core around which the smaller subunits are bound. The 220- and 140-kDa subunits can be also crosslinked together in the absence of bifunctional reagents by disulfide bond(s) formation. The 27-, 16.3- and 16-kDa subunits appear to be close to the largest subunit (220 kDa). The 21-kDa subunit is close to the 27- and 25-kDa subunits. The reaction of monofunctional reagents with the enzyme shows that the 42,40-kDa subunit is partially hidden in the interior of the protein molecule. On the basis of these results a model of the quaternary structure of the enzyme is proposed.


Assuntos
Reagentes de Ligações Cruzadas , RNA Polimerase II/química , Triticum/enzimologia , Dimetil Adipimidato , Dimetil Suberimidato , Dissulfetos/metabolismo , Eletroforese em Gel de Poliacrilamida , Concentração de Íons de Hidrogênio , Substâncias Macromoleculares , Conformação Proteica , Succinimidas
18.
Biophys J ; 60(1): 89-100, 1991 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-1883946

RESUMO

The conformational dynamic capabilities of the in situ bacteriorhodopsin (bR) can be studied by determination of the changes of the bR net helical segmental tilt angle (the angle between the polypeptide segments and the membrane normal) induced by various perturbations of the purple membrane (PM). The analysis of the far-UV oriented circular dichroism (CD) of the PM provides one means of achieving this. Previous CD studies have indicated that the tilt angle can change from approximately 10 degrees to 39 degrees depending on the perturbants used with no changes in the secondary structure of the bR. A recent study has indicated that the bleaching-induced tilt angle can be enhanced from approximately 24 degrees to 39 degrees by cross-linkage and papain-digestion perturbations which by themselves do not alter the tilt angle. To add further credence, this study has been repeated using midinfrared (IR) linear dichroic spectral analysis. In contrast to the CD method, analysis by the IR method depends on the orientation of the amide plane of the helix assumed. Excellent consistency is achieved between the two methods only when it is assumed that the structural characteristics of the alpha-helices of the bR are equally alpha I and alpha II in nature. Furthermore, the analysis of the IR data becomes essentially independent of the three amide transitions utilized. The net tilt angle of segments completely randomized relative to the incident light must be 54.736 in view of helix symmetry. A value of 54.735 degrees +/- 0.001 degree was achieved by the IR method for the ethanol-treated PM film, establishing this kind of film as an ideal random state standard and demonstrating the accuracy potential of the IR method.


Assuntos
Bacteriorodopsinas/química , Bacteriorodopsinas/metabolismo , Dicroísmo Circular , Dimetil Adipimidato/farmacologia , Análise de Fourier , Halobacterium/metabolismo , Cinética , Matemática , Modelos Estruturais , Conformação Proteica , Espectrofotometria Infravermelho/métodos
19.
Boll Soc Ital Biol Sper ; 66(10): 945-52, 1990 Oct.
Artigo em Italiano | MEDLINE | ID: mdl-2096879

RESUMO

In a study performed to identify the molecular mechanisms which regulate cell to cell adhesion and contact inhibition in neoplastic and syngeneic normal cells of the rat we have observed that the adhesive capacity depends on the reagents used, either EDTA or trypsin, to release the cells from monolayer. Taking profit of this last property and of the possibility of blocking free -NH2 groups on membrane proteins with specific cross-linking reagents "in vitro", we have studied in this work the behaviour of the proteins of the cell coat involved in cell to cell adhesion of rat fibroblasts FG/2. The cross-linking reagents used were dimethyladipimidate (DMA) and dimethylsuberimidate (DMS). The cells were exposed to the reagents at 0 degrees C for 30'. Cell to cell adhesion was measured by determining the percentage of single cells labeled with 3H-leucine, adhering to a confluent monolayer at different incubation times. The inhibitory effect on cell to cell adhesion brought about by cross-linking reagents indicates that a) EDTA-released cells are more sensitive to both imides than those released with trypsin, b) DMA is more effective on trypsin-released cells and c) DMS is more effective on EDTA-released cells. Therefore, we conclude that the inhibition of adhesion by reaction with the two cross-linking reagents is more likely due to a stiffening of the molecules of the cell coat involved in the adhesion, rather than to the modification of -NH2 residues which should specifically participate to adhesive process.


Assuntos
Adesão Celular/efeitos dos fármacos , Reagentes de Ligações Cruzadas/farmacologia , Dimetil Adipimidato/farmacologia , Dimetil Suberimidato/farmacologia , Fibroblastos/efeitos dos fármacos , Animais , Células Cultivadas , Fibroblastos/citologia , Ratos
20.
Biotechnol Appl Biochem ; 12(5): 501-5, 1990 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-2149640

RESUMO

Chronic myelogenous leukemia (CML) is a hematologic malignancy characterized by excessive growth of myeloid cells and their progenitors. The proportion of spectrin dimers compared to tetramers extracted from membranes at 4 degrees C, under low ionic strength conditions, increased in CML erythrocytes. These also displayed abnormal thermal sensitivity (between 45 and 46 instead of 49 degrees C). Crosslinking with the bifunctional reagent, dimethyl adipimidate (8.6 A) showed significant organizational modification of not only spectrin, but other cytoskeletal components such as ankyrin, bands 4.2 and 5. Enhanced concanavalin A (Con-A) agglutinability of CML erythrocytes also suggests altered topographic distribution of a functionally important membrane protein, band 3. The anion transport activities of erythrocytes from patients with CML and normal donors were comparable. In CML erythrocytes, significant reduction in the number of ankyrin-binding sites, present in the cytoplasmic domain of band 3, may lead to partial loss of cytoskeletal anchorage to the bilayer and account for their increased Con-A agglutinability and heat sensitivity and may lead to their premature removal from the circulation.


Assuntos
Membrana Eritrocítica/metabolismo , Leucemia Mielogênica Crônica BCR-ABL Positiva/sangue , Aglutinação , Anquirinas , Proteínas Sanguíneas/metabolismo , Concanavalina A , Reagentes de Ligações Cruzadas , Dimetil Adipimidato , Temperatura Alta , Humanos , Proteínas de Membrana/metabolismo , Iodeto de Potássio , Ligação Proteica , Sulfatos/sangue
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