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1.
Commun Biol ; 6(1): 54, 2023 01 16.
Artigo em Inglês | MEDLINE | ID: mdl-36646841

RESUMO

The 22nd genetically encoded amino acid, pyrrolysine, plays a unique role in the key step in the growth of methanogens on mono-, di-, and tri-methylamines by activating the methyl group of these substrates for transfer to a corrinoid cofactor. Previous crystal structures of the Methanosarcina barkeri monomethylamine methyltransferase elucidated the structure of pyrrolysine and provide insight into its role in monomethylamine activation. Herein, we report the second structure of a pyrrolysine-containing protein, the M. barkeri trimethylamine methyltransferase MttB, and its structure bound to sulfite, a substrate analog of trimethylamine. We also report the structure of MttB in complex with its cognate corrinoid protein MttC, which specifically receives the methyl group from the pyrrolysine-activated trimethylamine substrate during methanogenesis. Together these structures provide key insights into the role of pyrrolysine in methyl group transfer from trimethylamine to the corrinoid cofactor in MttC.


Assuntos
Corrinoides , Metiltransferases , Metiltransferases/metabolismo , Metilaminas/metabolismo , Corrinoides/metabolismo
2.
Chemosphere ; 309(Pt 1): 136640, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36181841

RESUMO

Chlorinated ethenes (CEs) are common and persistent contaminants of soil and groundwater. Their degradation is mostly driven by a process of bacterial reductive dechlorination (also called organohalide respiration) in anaerobic conditions. This study summarizes the outcomes of the long-term in-situ application of glycerol for the enhanced reductive dechlorination of CEs on a highly contaminated site. Glycerol injection resulted in an almost immediate increase in the abundance of fermentative Firmicutes, which produce essential sources of carbon (acetate) and electrons (H2) for organohalide-respiring bacteria (OHRB) and change groundwater conditions to be suitable for OHRB growth. The decreased redox potential of groundwater promoted also the proliferation of sulfate-reducing bacteria, which compete for electron donors with OHRB but at the same time support their growth by producing essential corrinoids and acetate. A considerable increase in the abundance of OHRB Dehalococcoides, concurrently with vinyl chloride (VC) reductase gene levels, was revealed by real time polymerase chain reaction (qPCR) method. Consistent with the shifts in bacterial populations, the concentrations of pollutants tetrachloroethylene and trichloroethylene decreased during the monitoring period, with rising levels of cis-1,2-dichloroethylene, VC, and most importantly, the final CE degradation products: ethene and ethane. Our study implies the importance of syntrophic bacterial interactions for successful and complete CE degradation and evaluates glycerol as convenient substrate to enhance reductive dechlorination and as an effective source of electrons for OHRB.


Assuntos
Chloroflexi , Corrinoides , Microbiota , Tetracloroetileno , Tricloroetileno , Cloreto de Vinil , Poluentes Químicos da Água , Tetracloroetileno/metabolismo , Tricloroetileno/metabolismo , Glicerol/metabolismo , Biodegradação Ambiental , Poluentes Químicos da Água/metabolismo , Bactérias/genética , Bactérias/metabolismo , Solo , Carbono/metabolismo , Oxirredutases/metabolismo , Sulfatos/metabolismo , Chloroflexi/metabolismo
3.
Biochemistry ; 61(24): 2791-2796, 2022 12 20.
Artigo em Inglês | MEDLINE | ID: mdl-36037062

RESUMO

Vitamin B12 (the cyanated form of cobalamin cofactors) is best known for its essential role in human health. In addition to its function in human metabolism, cobalamin also plays important roles in microbial metabolism and can impact microbial community function. Cobalamin is a member of the structurally diverse family of cofactors known as cobamides that are produced exclusively by certain prokaryotes. Cobamides are considered shared nutrients in microbial communities because the majority of bacteria that possess cobamide-dependent enzymes cannot synthesize cobamides de novo. Furthermore, different microbes have evolved metabolic specificity for particular cobamides, and therefore, the availability of cobamides in the environment is important for cobamide-dependent microbes. Determining the cobamides present in an environment of interest is essential for understanding microbial metabolic interactions. By examining the abundances of different cobamides in diverse environments, including 10 obtained in this study, we find that, contrary to its preeminence in human metabolism, cobalamin is relatively rare in many microbial habitats. Comparison of cobamide profiles of mammalian gastrointestinal samples and wood-feeding insects reveals that host-associated cobamide abundances vary and that fecal cobamide profiles differ from those of their host gastrointestinal tracts. Environmental cobamide profiles obtained from aquatic, soil, and contaminated groundwater samples reveal that the cobamide compositions of environmental samples are highly variable. As the only commercially available cobamide, cobalamin is routinely supplied during microbial culturing efforts. However, these findings suggest that cobamides specific to a given microbiome may yield greater insight into nutrient utilization and physiological processes that occur in these habitats.


Assuntos
Cobamidas , Vitamina B 12 , Animais , Bactérias/metabolismo , Cobamidas/metabolismo , Mamíferos/metabolismo , Vitamina B 12/metabolismo , Corrinoides/química , Corrinoides/metabolismo
4.
FEMS Microbiol Ecol ; 98(8)2022 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-35700008

RESUMO

Reductive dehalogenases (RDases) are corrinoid-dependent enzymes that reductively dehalogenate organohalides in respiratory processes. By comparing isotope effects in biotically catalyzed reactions to reference experiments with abiotic corrinoid catalysts, compound-specific isotope analysis (CSIA) has been shown to yield valuable insights into enzyme mechanisms and kinetics, including RDases. Here, we report isotopic fractionation (ε) during biotransformation of chloroform (CF) for carbon (εC = -1.52 ± 0.34‰) and chlorine (εCl = -1.84 ± 0.19‰), corresponding to a ΛC/Cl value of 1.13 ± 0.35. These results are highly suppressed compared to isotope effects observed both during CF biotransformation by another organism with a highly similar RDase (>95% sequence identity) at the amino acid level, and to those observed during abiotic dehalogenation of CF. Amino acid differences occur at four locations within the two different RDases' active sites, and this study examines whether these differences potentially affect the observed εC, εCl, and ΛC/Cl. Structural protein models approximating the locations of the residues elucidate possible controls on reaction mechanisms and/or substrate binding efficiency. These four locations are not conserved among other chloroalkane reducing RDases with high amino acid similarity (>90%), suggesting that these locations may be important in determining isotope fractionation within this homologous group of RDases.


Assuntos
Carbono , Corrinoides , Aminoácidos , Biodegradação Ambiental , Isótopos de Carbono , Domínio Catalítico , Cloro/química
5.
Methods Enzymol ; 668: 87-108, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35589203

RESUMO

Adenosylcobamides (AdoCbas) are coenzymes required by organisms from all domains of life to perform challenging chemical reactions. AdoCbas are characterized by a cobalt-containing tetrapyrrole ring, where an adenosyl group is covalently attached to the cobalt ion via a unique Co-C organometallic bond. During catalysis, this bond is homolytically cleaved by AdoCba-dependent enzymes to form an adenosyl radical that is critical for intra-molecular rearrangements. The formation of the Co-C bond is catalyzed by a family of enzymes known as ATP:Co(I)rrinoid adenosyltransferases (ACATs). ACATs adenosylate Cbas in two steps: (I) they generate a planar, Co(II) four-coordinate Cba to facilitate the reduction of Co(II) to Co(I), and (II) they transfer the adenosyl group from ATP to the Co(I) ion. To synthesize adenosylated corrinoids in vitro, it is imperative that anoxic conditions are maintained to avoid oxidation of Co(II) or Co(I) ions. Here we describe a method for the enzymatic synthesis and quantification of specific AdoCbas.


Assuntos
Alquil e Aril Transferases , Corrinoides , Trifosfato de Adenosina , Proteínas de Bactérias/química , Cobalto/química , Cobamidas/química , Corrinoides/química , Vitamina B 12/química
6.
Cell Rep ; 37(13): 110164, 2021 12 28.
Artigo em Inglês | MEDLINE | ID: mdl-34965410

RESUMO

The functional and genomic diversity of the human gut microbiome is shaped by horizontal transfer of mobile genetic elements (MGEs). Characterized MGEs can encode genes beneficial for their host's self-defense (e.g., antibiotic resistance) or ability to compete for essential or limited resources (e.g., vitamins). Vitamin B12 and related compounds (corrinoids) are critical nutrients that enable colonization by members of the common gut microbe phylum, the Bacteroidetes. Herein, we identify a distinct class of MGEs in the Bacteroidetes responsible for the mobilization and exchange of the genes required for transport of corrinoids, a group of cyclic tetrapyrrole cofactors including vitamin B12 (btuGBFCD). This class includes two distinct groups of conjugative transposons (CTns) and one group of phage. Conjugative transfer and vitamin B12 transport activity of two of the CTns were confirmed in vitro and in vivo, demonstrating the important role MGEs play in distribution of corrinoid transporters in the Bacteroidetes.


Assuntos
Proteínas de Bactérias/metabolismo , Bacteroidetes/metabolismo , Corrinoides/metabolismo , Microbioma Gastrointestinal , Sequências Repetitivas Dispersas , Proteínas de Membrana Transportadoras/metabolismo , Vitamina B 12/metabolismo , Animais , Proteínas de Bactérias/genética , Bacteroidetes/crescimento & desenvolvimento , Feminino , Humanos , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Complexo Vitamínico B/metabolismo
7.
J Med Chem ; 64(6): 3479-3492, 2021 03 25.
Artigo em Inglês | MEDLINE | ID: mdl-33677970

RESUMO

Corrination is the conjugation of a corrin ring containing molecule, such as vitamin B12 (B12) or B12 biosynthetic precursor dicyanocobinamide (Cbi), to small molecules, peptides, or proteins with the goal of modifying pharmacology. Recently, a corrinated GLP-1R agonist (GLP-1RA) exendin-4 (Ex4) has been shown in vivo to have reduced penetration into the central nervous system relative to Ex4 alone, producing a glucoregulatory GLP-1RA devoid of anorexia and emesis. The study herein was designed to optimize the lead conjugate for GLP-1R agonism and binding. Two specific conjugation sites were introduced in Ex4, while also utilizing various linkers, so that it was possible to identify Cbi conjugates of Ex4 that exhibit improved binding and agonist activity at the GLP-1R. An optimized conjugate (22), comparable with Ex4, was successfully screened and subsequently assayed for insulin secretion in rat islets and in vivo in shrews for glucoregulatory and emetic behavior, relative to Ex4.


Assuntos
Corrinoides/química , Corrinoides/farmacologia , Exenatida/análogos & derivados , Exenatida/farmacologia , Receptor do Peptídeo Semelhante ao Glucagon 1/agonistas , Animais , Células Cultivadas , Corrinoides/síntese química , Exenatida/síntese química , Receptor do Peptídeo Semelhante ao Glucagon 1/metabolismo , Células HEK293 , Humanos , Hipoglicemiantes/síntese química , Hipoglicemiantes/química , Hipoglicemiantes/farmacologia , Secreção de Insulina/efeitos dos fármacos , Ilhotas Pancreáticas/efeitos dos fármacos , Ilhotas Pancreáticas/metabolismo , Modelos Moleculares , Ratos , Ratos Sprague-Dawley
8.
Food Chem ; 347: 129048, 2021 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-33493835

RESUMO

In this study, we determined the vitamin B12 content of commercially-available edible insect products using a bioassay based on Lactobacillus delbrueckii ATCC 7830. Although the vitamin content of giant water bug, bee larva, grasshopper, and weaver ant products was low, we found that diving beetle and cricket products contained relatively high amounts of vitamin B12 (approximately 89.5 and 65.8 µg/100 g dry weight, respectively). In the cricket products most widely circulated as foods, specific corrinoid (vitamin B12) compounds were extracted and identified using ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). Despite the bioassay detecting high vitamin B12 content (approximately 50-75 µg/100 g dry weight) in these cricket products, UPLC-MS/MS analysis indicated that pseudovitamin B12 and 2-methylmercaptoadenyl cobamide (also known as factor S) were actually the predominant corrinoid compounds (~74% and ~21%, respectively), with authentic vitamin B12 making up only 5% of total corrinoids.


Assuntos
Corrinoides/análise , Análise de Alimentos/métodos , Gryllidae/metabolismo , Vitamina B 12/análise , Animais , Cromatografia Líquida de Alta Pressão , Gryllidae/química , Espectrometria de Massas em Tandem
9.
Biochim Biophys Acta Mol Cell Res ; 1868(1): 118896, 2021 01.
Artigo em Inglês | MEDLINE | ID: mdl-33096143

RESUMO

Vitamin B12, cobalamin, is a cobalt-containing ring-contracted modified tetrapyrrole that represents one of the most complex small molecules made by nature. In prokaryotes it is utilised as a cofactor, coenzyme, light sensor and gene regulator yet has a restricted role in assisting only two enzymes within specific eukaryotes including mammals. This deployment disparity is reflected in another unique attribute of vitamin B12 in that its biosynthesis is limited to only certain prokaryotes, with synthesisers pivotal in establishing mutualistic microbial communities. The core component of cobalamin is the corrin macrocycle that acts as the main ligand for the cobalt. Within this review we investigate why cobalt is paired specifically with the corrin ring, how cobalt is inserted during the biosynthetic process, how cobalt is made available within the cell and explore the cellular control of cobalt and cobalamin levels. The partitioning of cobalt for cobalamin biosynthesis exemplifies how cells assist metalation.


Assuntos
Cobalto/metabolismo , Simbiose/genética , Tetrapirróis/química , Vitamina B 12/metabolismo , Animais , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Cobalto/química , Coenzimas/genética , Coenzimas/metabolismo , Corrinoides/genética , Humanos , Ligantes , Tetrapirróis/metabolismo , Vitamina B 12/química , Vitamina B 12/genética
10.
Inorg Chem ; 59(17): 11995-12004, 2020 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-32794737

RESUMO

Methyl-coenzyme M reductase (MCR), which contains the nickel hydrocorphinoid cofactor F430, is responsible for biological methane generation under anaerobic conditions via a reaction mechanism which has not been completely elucidated. In this work, myoglobin reconstituted with an artificial cofactor, nickel(I) tetradehydrocorrin (NiI(TDHC)), is used as a protein-based functional model for MCR. The reconstituted protein, rMb(NiI(TDHC)), is found to react with methyl donors such as methyl p-toluenesulfonate and trimethylsulfonium iodide with methane evolution observed in aqueous media containing dithionite. Moreover, rMb(NiI(TDHC)) is found to convert benzyl bromide derivatives to reductively debrominated products without homocoupling products. The reactivity increases in the order of primary > secondary > tertiary benzylic carbons, indicating steric effects on the reaction of the nickel center with the benzylic carbon in the initial step. In addition, Hammett plots using a series of para-substituted benzyl bromides exhibit enhancement of the reactivity with introduction of electron-withdrawing substituents, as shown by the positive slope against polar substituent constants. These results suggest a nucleophilic SN2-type reaction of the Ni(I) species with the benzylic carbon to provide an organonickel species as an intermediate. The reaction in D2O buffer at pD 7.0 causes a complete isotope shift of the product by +1 mass unit, supporting our proposal that protonation of the organonickel intermediate occurs during product formation. Although the turnover numbers are limited due to inactivation of the cofactor by side reactions, the present findings will contribute to elucidating the reaction mechanism of MCR-catalyzed methane generation from activated methyl sources and dehalogenation.


Assuntos
Benzeno/química , Materiais Biomiméticos/química , Complexos de Coordenação/química , Corrinoides/química , Metano/química , Níquel/química , Oxirredutases/metabolismo , Soluções Tampão , Halogenação , Concentração de Íons de Hidrogênio , Oxirredução
11.
Commun Biol ; 3(1): 320, 2020 06 19.
Artigo em Inglês | MEDLINE | ID: mdl-32561885

RESUMO

Bacteria and archaea possessing the hgcAB gene pair methylate inorganic mercury (Hg) to form highly toxic methylmercury. HgcA consists of a corrinoid binding domain and a transmembrane domain, and HgcB is a dicluster ferredoxin. However, their detailed structure and function have not been thoroughly characterized. We modeled the HgcAB complex by combining metagenome sequence data mining, coevolution analysis, and Rosetta structure calculations. In addition, we overexpressed HgcA and HgcB in Escherichia coli, confirmed spectroscopically that they bind cobalamin and [4Fe-4S] clusters, respectively, and incorporated these cofactors into the structural model. Surprisingly, the two domains of HgcA do not interact with each other, but HgcB forms extensive contacts with both domains. The model suggests that conserved cysteines in HgcB are involved in shuttling HgII, methylmercury, or both. These findings refine our understanding of the mechanism of Hg methylation and expand the known repertoire of corrinoid methyltransferases in nature.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Mercúrio/metabolismo , Complexos Multiproteicos/química , Complexos Multiproteicos/metabolismo , Proteínas de Bactérias/genética , Corrinoides/metabolismo , Desulfovibrio desulfuricans/genética , Metagenoma , Metilação , Modelos Moleculares , Complexos Multiproteicos/genética , Filogenia , Conformação Proteica , Domínios Proteicos , Espectrofotometria Ultravioleta
12.
FEBS J ; 287(22): 4971-4981, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32160390

RESUMO

Corrinoid-dependent enzyme systems rely on the super-reduced state of the protein-bound corrinoid cofactor to be functional, for example, in methyl transfer reactions. Due to the low redox potential of the [CoII ]/[CoI ] couple, autoxidation of the corrinoid cofactor occurs and leads to the formation of the inactive [CoII ]-state. For the reactivation, which is an energy-demanding process, electrons have to be transferred from a physiological donor to the corrinoid cofactor by the help of a reductive activator protein. In this study, we identified reduced flavodoxin as electron donor for the ATP-dependent reduction of protein-bound corrinoid cofactors of bacterial O-demethylase enzyme systems. Reduced flavodoxin was generated enzymatically using pyruvate:ferredoxin/flavodoxin oxidoreductase rather than hydrogenase. Two of the four flavodoxins identified in Acetobacterium dehalogenans and Desulfitobacterium hafniense DCB-2 were functional in supplying electrons for corrinoid reduction. They exhibited a midpoint potential of about -400 mV (ESHE , pH 7.5) for the semiquinone/hydroquinone transition. Reduced flavodoxin could be replaced by reduced clostridial ferredoxin. It was shown that the low-potential electrons of reduced flavodoxin are first transferred to the iron-sulfur cluster of the reductive activator and finally to the protein-bound corrinoid cofactor. This study further highlights the importance of reduced flavodoxin, which allows maintaining a variety of enzymatic reaction cycles by delivering low-potential electrons.


Assuntos
Trifosfato de Adenosina/metabolismo , Proteínas de Bactérias/metabolismo , Corrinoides/metabolismo , Elétrons , Flavodoxina/metabolismo , Hidroquinonas/metabolismo , Oxirredutases/metabolismo , Acetobacterium/genética , Acetobacterium/metabolismo , Proteínas de Bactérias/genética , Desulfitobacterium/genética , Desulfitobacterium/metabolismo , Flavodoxina/química , Hidroquinonas/química , Oxirredução , Oxirredutases/genética , Espectrofotometria
13.
Biochemistry ; 59(10): 1124-1136, 2020 03 17.
Artigo em Inglês | MEDLINE | ID: mdl-32125848

RESUMO

ATP:Co(I)rrinoid adenosyltransferases (ACATs) catalyze the transfer of the adenosyl moiety from co-substrate ATP to a corrinoid substrate. ACATs are grouped into three families, namely, CobA, PduO, and EutT. The EutT family of enzymes is further divided into two classes, depending on whether they require a divalent metal ion for activity (class I and class II). To date, a structure has not been elucidated for either class of the EutT family of ACATs. In this work, results of bioinformatics analyses revealed several conserved residues between the C-terminus of EutT homologues and the structurally characterized Lactobacillus reuteri PduO (LrPduO) homologue. In LrPduO, these residues are associated with ATP binding and formation of an intersubunit salt bridge. These residues were substituted, and in vivo and in vitro data support the conclusion that the equivalent residues in the metal-free (i.e., class II) Listeria monocytogenes EutT (LmEutT) enzyme affect ATP binding. Results of in vivo and in vitro analyses of LmEutT variants with substitutions at phenylalanine and tryptophan residues revealed that replacement of the phenylalanine residue at position 72 affected access to the substrate-binding site and replacement of a tryptophan residue at position 238 affected binding of the Cbl substrate to the active site. Unlike the PduO family of ACATs, a single phenylalanine residue is not responsible for displacement of the α-ligand. Together, these data suggest that while EutT enzymes share a conserved ATP-binding motif and an intersubunit salt bridge with PduO family ACATs, class II EutT family ACATs utilize an unidentified mechanism for Cbl lower-ligand displacement and reduction that is different from that of PduO and CobA family ACATs.


Assuntos
Corrinoides/metabolismo , Listeria monocytogenes/enzimologia , Aciltransferases/metabolismo , Trifosfato de Adenosina/metabolismo , Aldeído Oxirredutases/genética , Aldeído Oxirredutases/metabolismo , Aldeído Oxirredutases/ultraestrutura , Alquil e Aril Transferases/metabolismo , Proteínas de Bactérias/química , Sítios de Ligação , Catálise , Domínio Catalítico , Cobalto/química , Cobamidas/metabolismo , Cinética , Limosilactobacillus reuteri/metabolismo , Listeria monocytogenes/genética , Listeria monocytogenes/metabolismo , Modelos Moleculares , Mutação , Transferases/metabolismo
14.
Plant Physiol ; 183(1): 167-178, 2020 05.
Artigo em Inglês | MEDLINE | ID: mdl-32079734

RESUMO

The corrinoid B12 is synthesized only by prokaryotes yet is widely required by eukaryotes as an enzyme cofactor. Microalgae have evolved B12 dependence on multiple occasions, and we previously demonstrated that experimental evolution of the non-B12-requiring alga Chlamydomonas reinhardtii in media supplemented with B12 generated a B12-dependent mutant (hereafter metE7). This clone provides a unique opportunity to study the physiology of a nascent B12 auxotroph. Our analyses demonstrate that B12 deprivation of metE7 disrupts C1 metabolism, causes an accumulation of starch and triacylglycerides, and leads to a decrease in photosynthetic pigments, proteins, and free amino acids. B12 deprivation also caused a substantial increase in reactive oxygen species, which preceded rapid cell death. Survival could be improved without compromising growth by simultaneously depriving the cells of nitrogen, suggesting a type of cross protection. Significantly, we found further improvements in survival under B12 limitation and an increase in B12 use efficiency after metE7 underwent a further period of experimental evolution, this time in coculture with a B12-producing bacterium. Therefore, although an early B12-dependent alga would likely be poorly adapted to coping with B12 deprivation, association with B12-producers can ensure long-term survival whilst also providing a suitable environment for evolving mechanisms to tolerate B12 limitation better.


Assuntos
Chlamydomonas reinhardtii/metabolismo , Chlamydomonas/metabolismo , Corrinoides/metabolismo , Nitrogênio/metabolismo , Espécies Reativas de Oxigênio/metabolismo
15.
ISME J ; 14(3): 815-827, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31896791

RESUMO

The genus Desulfoluna comprises two anaerobic sulfate-reducing strains, D. spongiiphila AA1T and D. butyratoxydans MSL71T, of which only the former was shown to perform organohalide respiration (OHR). Here we isolated a third strain, designated D. spongiiphila strain DBB, from marine intertidal sediment using 1,4-dibromobenzene and sulfate as the electron acceptors and lactate as the electron donor. Each strain harbors three reductive dehalogenase gene clusters (rdhABC) and corrinoid biosynthesis genes in their genomes, and dehalogenated brominated but not chlorinated organohalogens. The Desulfoluna strains maintained OHR in the presence of 20 mM sulfate or 20 mM sulfide, which often negatively affect other organohalide-respiring bacteria. Strain DBB sustained OHR with 2% oxygen in the gas phase, in line with its genetic potential for reactive oxygen species detoxification. Reverse transcription-quantitative PCR revealed differential induction of rdhA genes in strain DBB in response to 1,4-dibromobenzene or 2,6-dibromophenol. Proteomic analysis confirmed expression of rdhA1 with 1,4-dibromobenzene, and revealed a partially shared electron transport chain from lactate to 1,4-dibromobenzene and sulfate, which may explain accelerated OHR during concurrent sulfate reduction. Versatility in using electron donors, de novo corrinoid biosynthesis, resistance to sulfate, sulfide and oxygen, and concurrent sulfate reduction and OHR may confer an advantage to marine Desulfoluna strains.


Assuntos
Deltaproteobacteria/isolamento & purificação , Deltaproteobacteria/metabolismo , Água do Mar/microbiologia , Sulfatos/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Corrinoides/biossíntese , Deltaproteobacteria/classificação , Deltaproteobacteria/genética , Halogenação , Família Multigênica , Oxirredução , Proteômica
16.
Chemosphere ; 234: 971-977, 2019 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-31519106

RESUMO

Iodinated contrast media (ICM) are found at considerably higher concentrations than any other pharmaceutical in waste water, surface water and bank filtrate. While the compounds are persistent to deiodination in aerobic environments, field data from bank filtration transects have demonstrated a partial deiodination in reducing soil-water environments. In a previous lab study, we have shown that this reductive deiodination is abiotically catalyzed by (free) corrinoids. To achieve a better understanding of the incomplete deiodination in the environment, we now investigated the reaction kinetics based on the decrease of the iodinated compound, the formation of deiodinated transformation products and the iodide release. The deiodination follows first-order kinetics and consists of three partial reactions for the release of three iodine atoms. The deiodination rate decreased with decreasing iodination degree with the deiodination rate constants k1 > k2 > k3. In contrast to the ICM, 2,4,6- and 2,3,5-triiodobenzoic acid, 5-amino-2,4,6-triiodoisophthalic acid and monoiodobenzoic acids did not show a complete deiodination under the same test conditions. Our results show that the deiodination strongly depends on the substitution pattern of the bound iodine atoms as well as on adjacent functional groups. Iodine atoms in ortho-position to another iodine atom or a carboxyl group were released more easily while an amino group in ortho-position inhibited the deiodination. Tests in tap water in the presence of B12 showed a much slower deiodination than in ultrapure water, most likely caused by competitive electron acceptors in the water matrix.


Assuntos
Meios de Contraste/química , Compostos de Iodo/química , Águas Residuárias/química , Poluentes Químicos da Água/química , Catálise , Corrinoides , Filtração , Halogenação , Iodo , Cinética , Oxidantes , Eliminação de Resíduos Líquidos/métodos , Raios X
17.
Protein Sci ; 28(10): 1902-1908, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31359509

RESUMO

Corrinoids are essential cofactors of enzymes involved in the C1 metabolism of anaerobes. The active, super-reduced [CoI ] state of the corrinoid cofactor is highly sensitive to autoxidation. In O-demethylases, the oxidation to inactive [CoII ] is reversed by an ATP-dependent electron transfer catalyzed by the activating enzyme (AE). The redox potential changes of the corrinoid cofactor, which occur during this reaction, were studied by potentiometric titration coupled to UV/visible spectroscopy. By applying europium(II)-diethylenetriaminepentaacetic acid (DTPA) as a reductant, we were able to determine the midpoint potential of the [CoII ]/[CoI ] couple of the protein-bound corrinoid cofactor in the absence and presence of AE and/or ATP. The data revealed that the transfer of electrons from a physiological donor to the corrinoid as the electron-accepting site is achieved by increasing the potential of the corrinoid cofactor from -530 ± 15 mV to -250 ± 10 mV (ESHE , pH 7.5). The first 50 to 100 mV of the shift of the redox potential seem to be caused by the interaction of nucleotide-bound AE with the corrinoid protein or its cofactor. The remaining 150-200 mV had to be overcome by the chemical energy of ATP hydrolysis. The experiments revealed that Eu(II)-DTPA, which was already known as a powerful reducing agent, is a suitable electron donor for titration experiments of low-potential redox centers. Furthermore, the results of this study will contribute to the understanding of thermodynamically unfavorable electron transfer processes driven by the power of ATP hydrolysis.


Assuntos
Trifosfato de Adenosina/química , Corrinoides/química , Európio/química , Ácido Pentético/química , Oxirredução
18.
Angew Chem Int Ed Engl ; 58(31): 10756-10760, 2019 07 29.
Artigo em Inglês | MEDLINE | ID: mdl-31115943

RESUMO

The B12 cofactors instill a natural curiosity regarding the primordial selection and evolution of their corrin ligand. Surprisingly, this important natural macrocycle has evaded molecular scrutiny, and its specific role in predisposing the incarcerated cobalt ion for organometallic catalysis has remained obscure. Herein, we report the biosynthesis of the cobalt-free B12 corrin moiety, hydrogenobyric acid (Hby), a compound crafted through pathway redesign. Detailed insights from single-crystal X-ray and solution structures of Hby have revealed a distorted helical cavity, redefining the pattern for binding cobalt ions. Consequently, the corrin ligand coordinates cobalt ions in desymmetrized "entatic" states, thereby promoting the activation of B12 -cofactors for their challenging chemical transitions. The availability of Hby also provides a route to the synthesis of transition metal analogues of B12 .


Assuntos
Corrinoides/biossíntese , Uroporfirinas/metabolismo , Vitamina B 12/metabolismo , Biocatálise , Cobalto/química , Cobalto/metabolismo , Corrinoides/química , Ligantes , Estrutura Molecular , Uroporfirinas/química , Vitamina B 12/química
19.
Gut Microbes ; 10(6): 654-662, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31062653

RESUMO

Vitamin B12 is a critical nutrient for humans as well as microbes. Due to saturable uptake, high dose oral B12 supplements are largely unabsorbed and reach the distal gut where they are available to interact with the microbiota. The aim of this study was to determine if oral B12 supplementation in mice alters 1) the concentration of B12 and related corrinoids in the distal gut, 2) the fecal microbiome, 3) short chain fatty acids (SCFA), and 4) susceptibility to experimental colitis. C57BL/6 mice (up to 24 animals/group) were supplemented with oral 3.94 µg/ml cyanocobalamin (B12), a dose selected to approximate a single 5 mg supplement for a human. Active vitamin B12 (cobalamin), and four B12-analogues ([ADE]CN-Cba, [2Me-ADE]CN-Cba, [2MeS-ADE]CN-Cba, CN-Cbi) were analyzed in cecal and fecal contents using liquid chromatography/mass spectrometry (LC/MS), in parallel with evaluation of fecal microbiota, cecal SCFA, and susceptibility to dextran sodium sulfate (DSS) colitis. At baseline, active B12 was a minor constituent of overall cecal (0.86%) and fecal (0.44%) corrinoid. Oral B12 supplementation increased active B12 at distal sites by >130-fold (cecal B12 increased from 0.08 to 10.60 ng/mg, fecal B12 increased from 0.06 to 7.81 ng/ml) and reduced microbe-derived fecal corrinoid analogues ([ADE]CN-Cba, [2Me-ADE]CN-Cba, [2MeS-ADE]CN-Cba). Oral B12 had no effect on cecal SCFA. Microbial diversity was unaffected by this intervention, however a selective decrease in Bacteroides was observed with B12 treatment. Lastly, no difference in markers of DSS-induced colitis were detected with B12 treatment.


Assuntos
Bacteroides/efeitos dos fármacos , Corrinoides/análise , Suplementos Nutricionais/análise , Vitamina B 12/administração & dosagem , Complexo Vitamínico B/administração & dosagem , Administração Oral , Animais , Bacteroides/crescimento & desenvolvimento , Ceco/química , Colite/induzido quimicamente , Colite/dietoterapia , Sulfato de Dextrana/toxicidade , Ácidos Graxos Voláteis/análise , Fezes/química , Fezes/microbiologia , Microbioma Gastrointestinal/efeitos dos fármacos , Camundongos Endogâmicos C57BL , Vitamina B 12/farmacologia , Complexo Vitamínico B/farmacologia
20.
Chemosphere ; 221: 212-218, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30640003

RESUMO

Iodinated X-ray contrast media are known for their stability concerning deiodination in the aquatic environment under aerobic conditions. In this study, we demonstrate the abiotic reductive deiodination of the iodinated contrast media iopromide, iopamidol and diatrizoate in the presence of corrinoids. In addition, triiodinated benzoic acid derivatives with iodine atoms bound at different positions were investigated. Corrinoids like cyanocobalamin (vitamin B12) and dicyanocobinamide served as electron shuttles and as catalysts between the reducing agent (e.g., titanium (III) citrate) and the electron accepting iodinated compound. The concentration decrease of the iodinated compounds followed first-order kinetics with rate constant kobs depending on the iodinated compound. A linear correlation between the rate of iodide release and the corrinoid concentration was observed, with deiodination rates for dicyanocobinamide twice as high as for vitamin B12. Reducing agents with a less negative standard redox potential like dithiothreitol or cysteine caused slower deiodination as the cobalt center was only reduced to its CoII oxidation state. With a temperature increase from 11 to 23 °C, the concentrations of released iodide doubled. A complete deiodination was only observed for the iodinated contrast media but not for structurally similar iodinated benzoic acid derivatives.


Assuntos
Meios de Contraste/química , Corrinoides/química , Halogenação , Raios X , Catálise , Diatrizoato/química , Iodo/química , Iohexol/análogos & derivados , Iohexol/química , Iopamidol/química , Cinética , Oxirredução
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