The recovery of European freshwater biodiversity has come to a halt.

Owing to a long history of anthropogenic pressures, freshwater ecosystems are among the most vulnerable to biodiversity loss1. Mitigation measures, including wastewater treatment and hydromorphological restoration, have aimed to improve environmental quality and foster the recovery of freshwater biodiversity2. Here, using 1,816 time series of freshwater invertebrate communities collected across 22 European countries between 1968 and 2020, we quantified temporal trends in taxonomic and functional diversity and their responses to environmental pressures and gradients. We observed overall increases in taxon richness (0.73% per year), functional richness (2.4% per year) and abundance (1.17% per year). However, these increases primarily occurred before the 2010s, and have since plateaued. Freshwater communities downstream of dams, urban areas and cropland were less likely to experience recovery. Communities at sites with faster rates of warming had fewer gains in taxon richness, functional richness and abundance. Although biodiversity gains in the 1990s and 2000s probably reflect the effectiveness of water-quality improvements and restoration projects, the decelerating trajectory in the 2010s suggests that the current measures offer diminishing returns. Given new and persistent pressures on freshwater ecosystems, including emerging pollutants, climate change and the spread of invasive species, we call for additional mitigation to revive the recovery of freshwater biodiversity.

BeachLog: A multiple uses and interactive beach picture.

There are some tools in place that classifies and/or rank beaches according to a series of parameters. It is possible to identify a gap in the development of tools that map and describe beaches without putting the results into a classification status of good or bad. Since beaches are important from different points of views such as ecology, tourism, economy, pollution or invasive species studies and management, fisheries, estate development, protected areas, among others it is relevant to describe and understand parameters in detail. This work offers a multi-purpose and interactive beach descriptor called BeachLog. It can be used by beachgoers to keep their own records in the same way a diver uses a Diver's LogBook, managers can use the tool to support coastal management projects, long-term monitoring, and beach description baseline. Also, BeachLog can be a didactic tool to aiming to bring environmental sciences closer to technology through the use of spreadsheets and dashboards. BeachLog is based on the more frequent parameters in the literature, selected, organized, accounted for, and altered/added according to expert opinion. We created a list of 28 parameters, all of which were described in details of what is expected to be observed by the user. They were divided into 5 groups (Environmental characteristics, Services & Infrastructure, Information & Security, Planning & Management, and Descriptive). Here, we describe 14 Brazilian beaches using the BeachLog by inputting the results as parameters presence or absence (0/1) and descriptives in a table that can be transformed into an interactive dashboard for better/easier visualization. Planning & Management was absent on all 14 beaches studied, pointing out the relevance and gaps in this group. In the other groups it was possible to observe variation in the parameter occurrence, indicating that each beach is different and it is important to observe parameters individually. Beach Litter and Invasive Species parameters from the Environmental characteristics group were present in all beaches. BeachLog showed as an easy way to describe a beach and can be a tool to support diagnosis and understanding of the beach's status.

Advances in Catchment Science, Hydrochemistry, and Aquatic Ecology Enabled by High-Frequency Water Quality Measurements.

High-frequency water quality measurements in streams and rivers have expanded in scope and sophistication during the last two decades. Existing technology allows in situ automated measurements of water quality constituents, including both solutes and particulates, at unprecedented frequencies from seconds to subdaily sampling intervals. This detailed chemical information can be combined with measurements of hydrological and biogeochemical processes, bringing new insights into the sources, transport pathways, and transformation processes of solutes and particulates in complex catchments and along the aquatic continuum. Here, we summarize established and emerging high-frequency water quality technologies, outline key high-frequency hydrochemical data sets, and review scientific advances in key focus areas enabled by the rapid development of high-frequency water quality measurements in streams and rivers. Finally, we discuss future directions and challenges for using high-frequency water quality measurements to bridge scientific and management gaps by promoting a holistic understanding of freshwater systems and catchment status, health, and function.

Late Cenozoic cooling restructured global marine plankton communities.

The geographic ranges of marine organisms, including planktonic foraminifera1, diatoms, dinoflagellates2, copepods3 and fish4, are shifting polewards owing to anthropogenic climate change5. However, the extent to which species will move and whether these poleward range shifts represent precursor signals that lead to extinction is unclear6. Understanding the development of marine biodiversity patterns over geological time and the factors that influence them are key to contextualizing these current trends. The fossil record of the macroperforate planktonic foraminifera provides a rich and phylogenetically resolved dataset that provides unique opportunities for understanding marine biogeography dynamics and how species distributions have responded to ancient climate changes. Here we apply a bipartite network approach to quantify group diversity, latitudinal specialization and latitudinal equitability for planktonic foraminifera over the past eight million years using Triton, a recently developed high-resolution global dataset of planktonic foraminiferal occurrences7. The results depict a global, clade-wide shift towards the Equator in ecological and morphological community equitability over the past eight million years in response to temperature changes during the late Cenozoic bipolar ice sheet formation. Collectively, the Triton data indicate the presence of a latitudinal equitability gradient among planktonic foraminiferal functional groups which is coupled to the latitudinal biodiversity gradient only through the geologically recent past (the past two million years). Before this time, latitudinal equitability gradients indicate that higher latitudes promoted community equitability across ecological and morphological groups. Observed range shifts among marine planktonic microorganisms1,2,8 in the recent and geological past suggest substantial poleward expansion of marine communities even under the most conservative future global warming scenarios.

Origination of the modern-style diversity gradient 15 million years ago.

The latitudinal diversity gradient (LDG) is a prevalent feature of modern ecosystems across diverse clades1-4. Recognized for well over a century, the causal mechanisms for LDGs remain disputed, in part because numerous putative drivers simultaneously covary with latitude1,3,5. The past provides the opportunity to disentangle LDG mechanisms because the relationships among biodiversity, latitude and possible causal factors have varied over time6-9. Here we quantify the emergence of the LDG in planktonic foraminifera at high spatiotemporal resolution over the past 40 million years, finding that a modern-style gradient arose only 15 million years ago. Spatial and temporal models suggest that LDGs for planktonic foraminifera may be controlled by the physical structure of the water column. Steepening of the latitudinal temperature gradient over 15 million years ago, associated with an increased vertical temperature gradient at low latitudes, may have enhanced niche partitioning and provided more opportunities for speciation at low latitudes. Supporting this hypothesis, we find that higher rates of low-latitude speciation steepened the diversity gradient, consistent with spatiotemporal patterns of depth partitioning by planktonic foraminifera. Extirpation of species from high latitudes also strengthened the LDG, but this effect tended to be weaker than speciation. Our results provide a step change in understanding the evolution of marine LDGs over long timescales.

Acid Mine Drainage Effects in the Hydrobiology of Freshwater Streams from Three Mining Areas (SW Portugal): A Statistical Approach.

Aljustrel, Lousal and S. Domingos mines are located in the Iberian Pyrite Belt (IPB), one of the greatest massive sulfide ore deposits worldwide. These mines' surrounding streams are affected by Acid Mine Drainage (AMD). The main purpose of this study was to understand AMD influence in the water quality and diatom behavior. Thus, waters and diatoms were sampled in 6 sites from the 3 selected mines on winter and summer of 2016. The highest concentrations were found in acidic sites: A3 (Aljustrel-Al, Cd, Cu, Fe and Zn (and lowest pH)) and L1 (Lousal-As, Mn, Ca, Mg, SO42- and conductivity). The most abundant diatom species was Pinnularia aljustrelica with 100% of dominance in A3 and S1 acidic sites, which puts in evidence this species adaptation to AMD harsh conditions. Multivariate cluster analysis allowed us to reinforce results from previous studies, where spatial differences were more relevant than seasonal ones. In 12 years (2004-2016), and with many transformations undertaken (re-opening and rehabilitation), there is a conservative behavior in the biological species (diatoms) and physicochemical concentrations (metals, pH and sulfates) from these three mining sites. This type of biogeochemical diagnosis is necessary for the sustainable use of these waters and the prevention of the polluting process, aimed to protect the water ecosystem and its biodiversity.

River Ecological Corridor: A Conceptual Framework and Review of the Spatial Management Scope.

Studying the spatial management scope of the river ecological corridor is a crucial step in effectively managing river health problems. For various purposes and needs, human beings intervene excessively in the river, resulting in the problems of unclear spatial scope, unclear ownership, and unreasonable functional utilization of the river ecological corridor. However, there is scarce research on the management scope of the river ecological corridor at present, and on the coordination relationship with territorial spatial protection planning. Therefore, in order to solve this key problem, this paper reviews and summarizes the current research status and development trends in terms of the concept, components, and other basic theories of the river ecological corridor, as well as relevant policy regulations. The relationship between the spatial scope of the river ecological corridor and the territorial spatial control line is analyzed, including the relationship with the river shoreline, aquatic ecological redline, "three control lines" and other control lines. Accordingly, this study reviewed the spatial management and control scope of the river ecological corridor. It also determined that the boundary line of the river shoreline management is the minimum line, the aquatic ecological redline, and the "three control lines" are the outermost boundary lines, in which the aquatic ecological redline has priority over other control lines. It also points out the thinking of determining the management scope in the protection and restoration of the river ecological corridor in the future. Our findings can provide a decision-making basis for the management of river ecological space.

Evaluation of aquatic ecological health of sluice-controlled rivers in Huai River Basin (China) using evaluation index system.

The aquatic ecological health status was focused on the Huai River Basin (HRB) from the aspects of water quantity, water quality, water ecology, river connectivity, and riparian habitat environment. Ten monitoring sections were set up in the middle and upper reaches of HRB, and 5 experiments of each section were conducted in July and December from 2012 to 2014. Thus, relevant data on the species, the density of phytoplankton, zooplankton and benthic animals, the concentration of water physicochemical variables, and riparian habitat quality were obtained. Eleven key impact factors were chosen using frequency statistics, theoretical analysis, and correlation analysis methods, forming the evaluation index system of aquatic ecological health. Then, the indicator weight value was determined by the combined weight method, and the health degree was evaluated by the comprehensive index method. On the whole, the aquatic ecological health degree of the upper sections (D1 ~ D3) of the Shaying River ranges from 0.334 to 0.927, which is generally in a "sub-healthy" state. The aquatic ecological health degree of the main section of the Huai River (D8 ~ D10) ranges from 0.362 to 0.777, which is in the "critical" or "sub-healthy" state. The Huaidian Sluice (D5) and Fuyang Sluice (D6) in the middle and lower reaches of the Shaying River had the worst aquatic ecological health. Its water ecological health range is 0.283-0.523, and most of them are under "sub-pathologic." The research results have important theoretical and practical significance. They can enrich the evaluation theories and methods of river aquatic ecological health, help to grasp the aquatic ecological health status in HRB, and provide basic support for aquatic ecological protection and water pollution control in sluice-controlled rivers.

[Elucidation of Phenomena Involving Cyanobacteria in Freshwater Ecosystem by Chemically Ecological Approach].

Lakes Sagami and Tsukui are reservoirs constructed by connecting to the Sagami River. Because of eutrophication of the lakes, cyanobacteria have appeared every year. This review deals with phenomena related to occurrence of cyanobacteria that have been observed for 40 years since 1974 at the lakes. These 40 years of observations raised three interesting issues including the retention of cyanobacteria on their surfaces. These phenomena have been attributed to the usual factors, such as illuminance, nutrition and water temperature, but our research results suggested that they cannot be resolved without the introduction of another factor. We have attempted to elucidate various phenomena involving cyanobacteria in lake ecosystems by chemical ecological methods using volatile organic compounds (VOCs) produced by the cyanobacteria as indicators. One of the VOCs, ß-cyclocitral, was significantly involved in the above phenomena, which was considered to be produced by the carotenoid cleavage dioxygenase (CCD) of the cyanobacteria. ß-Cyclocitral was not produced in the two known CCDs, but two additional CCDs to Microcystis aeruginosa participated to produce the ß-cyclocitral. These CCDs did not directly produce ß-cyclocitral, but it was accumulated in cells as their precursors. The released ß-cyclocitral underwent a Baeyer-Villiger-like oxidation. It was speculated that Microcystis activated the CCD genes through density stress and produced ß-cyclocitral, which acted as an allelopathic substance. As a result, the number of cells of cyanobacteria decreased, and the resulting nitrogen and phosphorus were fed to the living cyanobacteria. It is postulated that this "quorum sensing" was functioning in the above-mentioned issues.

The application of Uniform Manifold Approximation and Projection (UMAP) for unconstrained ordination and classification of biological indicators in aquatic ecology.

The analysis of community structure in studies of freshwater ecology often requires the application of dimensionality reduction to process multivariate data. A high number of dimensions (number of taxa/environmental parameters × number of samples), nonlinear relationships, outliers, and high variability usually hinder the visualization and interpretation of multivariate datasets. Here, we proposed a new statistical design using Uniform Manifold Approximation and Projection (UMAP), and community partitioning using Louvain algorithms, to ordinate and classify the structure of aquatic biota in two-dimensional space. We present this approach with a demonstration of five previously published datasets for diatoms, macrophytes, chironomids (larval and subfossil), and fish. Principal Component Analysis (PCA) and Ward's clustering were also used to assess the comparability of the UMAP approach compared to traditional approaches for ordination and classification. The ordination of sampling sites in 2-dimensional space showed a much denser, and easier to interpret, grouping using the UMAP approach in comparison to PCA. The classification of community structure using the Louvain algorithm in UMAP ordinal space showed a high classification strength for data with a high number of dimensions than the cluster patterns obtained with the use of a Ward's algorithm in PCA. Environmental gradients, presented via heat maps, were overlayed with the ordination patterns of aquatic communities, confirming that the ordinations obtained by UMAP were ecologically meaningful. This is the first study that has applied a UMAP approach with classification using Louvain algorithms on ecological datasets. We show that the performance of local and global structures, as well as the number of clusters determined by the algorithm, make this approach more powerful than traditional approaches.

A classification framework for interspecific trade-offs in aquatic ecology.

In some cases, wildlife management objectives directed at multiple species can conflict with one another, creating species trade-offs. For managers to effectively identify trade-offs and avoid their undesirable outcomes, they must understand the agents involved and their corresponding interactions. A literature review of interspecific trade-offs within freshwater and marine ecosystems was conducted to illustrate the scope of potential interspecific trade-offs that may occur. We identified common pitfalls that lead to failed recognition of interspecific trade-offs, including, single-species management and limited consideration of the spatial and temporal scale of ecosystems and their management regimes. We devised a classification framework of common interspecific trade-offs within aquatic systems. The classification can help managers determine whether the conflict is species based through direct relationships (i.e., predator-prey, competition, other antagonistic relationships) or indirect relationships involving intermediate species (i.e., conflict-generating species) or whether the conflict is driven by opposing management objectives for species that would otherwise not interact (i.e., nontarget management effects). Once the nature and scope of trade-offs are understood, existing decision-making tools, such as structured decision-making and real-options analysis, can be incorporated to improve the management of aquatic ecosystems. Article Impact Statement: A synthesis of interspecific trade-offs in aquatic ecosystems supports their identification and resolution.

Un Marco de Clasificación para Compensaciones Interespecíficas en Ecología Acuática Resumen En algunos casos, los objetivos del manejo de fauna dirigidos a muchas especies pueden entrar en conflicto entre sí creando compensaciones entre las especies. Para que los manejadores identifiquen efectivamente estas compensaciones y eviten sus resultados no deseados, deben entender a los agentes involucrados y sus interacciones correspondientes. Se realizó una revisión literaria de las compensaciones interespecíficas dentro de los ecosistemas marinos y de agua dulce para ilustrar el alcance de las compensaciones interespecíficas que pueden ocurrir. Identificamos dificultades comunes que llevan al reconocimiento fallido de las compensaciones interespecíficas, incluyendo el manejo de una sola especie y sus regímenes de manejo. Diseñamos un marco de clasificación de compensaciones interespecíficas comunes dentro de los ecosistemas acuáticos. La clasificación puede ayudar a los manejadores a determinar si el conflicto está basado en las especies por sus relaciones directas (es decir, depredador-presa, competencia, otras relaciones antagonistas) o por relaciones indirectas que involucran a otras especies (es decir, efectos del manejo de especies que no son el objetivo). Una vez que se entiende la naturaleza y el alcance de las compensaciones, las herramientas de toma de decisión existentes, como la toma estructurada de decisiones y el análisis de opciones reales, pueden incorporarse para mejorar el manejo de los ecosistemas acuáticos.

Nutritional status and prey energy density govern reproductive success in a small cetacean.

A variety of mammals suppress reproduction when they experience poor physical condition or environmental harshness. In many marine mammal species, reproductive impairment has been correlated to polychlorinated biphenyls (PCBs), the most frequently measured chemical pollutants, while the relative importance of other factors remains understudied. We investigate whether reproductively active females abandon investment in their foetus when conditions are poor, exemplified using an extensively studied cetacean species; the harbour porpoise (Phocoena phocoena). Data on disease, fat and muscle mass and diet obtained from necropsies in The Netherlands were used as proxies of health and nutritional status and related to pregnancy and foetal growth. This was combined with published life history parameters for 16 other areas to correlate to parameters reflecting environmental condition: mean energy density of prey constituting diets (MEDD), cumulative human impact and PCB contamination. Maternal nutritional status had significant effects on foetal size and females in poor health had lower probabilities of being pregnant and generally did not sustain pregnancy throughout gestation. Pregnancy rates across the Northern Hemisphere were best explained by MEDD. We demonstrate the importance of having undisturbed access to prey with high energy densities in determining reproductive success and ultimately population size for small cetaceans.

Physiological Effects of Neonicotinoid Insecticides on Non-Target Aquatic Animals-An Updated Review.

In this paper, we review the effects of large-scale neonicotinoid contaminations in the aquatic environment on non-target aquatic invertebrate and vertebrate species. These aquatic species are the fauna widely exposed to environmental changes and chemical accumulation in bodies of water. Neonicotinoids are insecticides that target the nicotinic type acetylcholine receptors (nAChRs) in the central nervous systems (CNS) and are considered selective neurotoxins for insects. However, studies on their physiologic impacts and interactions with non-target species are limited. In researches dedicated to exploring physiologic and toxic outcomes of neonicotinoids, studies relating to the effects on vertebrate species represent a minority case compared to invertebrate species. For aquatic species, the known effects of neonicotinoids are described in the level of organismal, behavioral, genetic and physiologic toxicities. Toxicological studies were reported based on the environment of bodies of water, temperature, salinity and several other factors. There exists a knowledge gap on the relationship between toxicity outcomes to regulatory risk valuation. It has been a general observation among studies that neonicotinoid insecticides demonstrate significant toxicity to an extensive variety of invertebrates. Comprehensive analysis of data points to a generalization that field-realistic and laboratory exposures could result in different or non-comparable results in some cases. Aquatic invertebrates perform important roles in balancing a healthy ecosystem, thus rapid screening strategies are necessary to verify physiologic and toxicological impacts. So far, much of the studies describing field tests on non-target species are inadequate and in many cases, obsolete. Considering the current literature, this review addresses important information gaps relating to the impacts of neonicotinoids on the environment and spring forward policies, avoiding adverse biological and ecological effects on a range of non-target aquatic species which might further impair the whole of the aquatic ecological web.

ICTV Virus Taxonomy Profile: Marnaviridae 2021.

The family Marnaviridae comprises small non-enveloped viruses with positive-sense RNA genomes of 8.6-9.6 kb. Isolates infect marine single-celled eukaryotes (protists) that come from diverse lineages. Some members are known from metagenomic studies of ocean virioplankton, with additional unclassified viruses described from metagenomic datasets derived from marine and freshwater environments. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Marnaviridae, which is available at ictv.global/report/marnaviridae.

Optimization of Slash and Clear Community-Directed Control of Simulium damnosum Sensu Stricto in Northern Uganda.

Onchocerciasis, caused by infection with Onchocerca volvulus, has been targeted for elimination by 2030. Currently, onchocerciasis elimination programs rely primarily on mass distribution of ivermectin. However, ivermectin alone may not be sufficient to achieve elimination in some circumstances, and additional tools may be needed. Vector control has been used as a tool to control onchocerciasis, but vector control using insecticides is expensive and ecologically detrimental. Community-directed removal of the trailing vegetation black fly larval attachment sites (slash and clear) has been shown to dramatically reduce vector biting densities. Here, we report studies to optimize the slash and clear process. Conducting slash and clear interventions at Simulium damnosum sensu stricto breeding sites located within 2 km of afflicted communities resulted in a 95% reduction in vector biting. Extending slash and clear further than 2 km resulted in no further decrease. A single intervention conducted at the first half of the rainy season resulted in a 97% reduction in biting rate, whereas an intervention conducted at the end of the rainy season resulted in a 94% reduction. Vector numbers in any of the intervention villages did not fully recover by the start of the following rainy season. These results suggest that slash and clear may offer an inexpensive and effective way to augment ivermectin distribution in the effort to eliminate onchocerciasis in Africa.

Bio-Inspired Approach for Long-Range Underwater Navigation Using Model Predictive Control.

Lots of evidence has indicated that many kinds of animals can achieve goal-oriented navigation by spatial cognition and dead reckoning. The geomagnetic field (GF) is a ubiquitous cue for navigation by these animals. Inspired by the goal-oriented navigation of animals, a novel long-distance underwater geomagnetic navigation (LDUGN) method is presented in this article, which only utilizes the declination component ( D ) and inclination component ( I ) of GF for underwater navigation without any prior knowledge of the geographical location or geomagnetic map. The D and I measured by high-precision geomagnetic sensors are compared periodically with that of the destination to determine the velocity and direction in the next step. A model predictive control (MPC) algorithm with control and state constraints is proposed to achieve the control and optimization of navigation trajectory. Because the optimal control is recalculated at each sampling instant, the MPC algorithm can overcome interferences of geomagnetic daily fluctuation, geomagnetic storms, ocean current, and geomagnetic local anomaly. The simulation results validate the feasibility and accuracy of the proposed algorithm.

Validation of dried blood spot sampling for determining trophic positions of Arctic char using nitrogen stable isotope analyses of amino acids.

RATIONALE: Dried blood spots (DBSs) are gaining popularity for biomarker analyses in ecological research due to their advantages for use in field-based research and in remote settings; however, many DBS biomarkers remain unvalidated. We validated the application of compound-specific stable nitrogen isotope analyses of amino acids (CSIA-AAs) to field-prepared DBSs for determining trophic positions of wild-caught Arctic char (Salvelinus alpinus). METHODS: Whole blood and muscle from Arctic char were collected, and DBSs were created in the field. We measured the stable nitrogen isotope ratios (expressed as δ15 N values) of the amino acids glutamic acid (Glu) and phenylalanine (Phe) isolated from Arctic char samples using CSIA-AAs. We then compared amino acid δ15 N values from DBSs and the other sample types (whole blood and muscle) from the same specimens. We calculated and compared trophic position estimates generated from whole blood, DBSs, and muscle. RESULTS: The δ15 N values of Glu and Phe, as well as trophic position estimates from DBSs, were highly correlated with δ15 N values and estimates from both whole blood and muscle. The DBS amino acid δ15 N values and trophic position estimates agreed well with those from whole blood. Although mean differences between amino acid δ15 N values from DBSs and muscle were noted, the offsets were small and resulted in a 0.2 mean difference between trophic position estimates for DBSs and muscle. CONCLUSIONS: We demonstrate that the application of CSIA-AAs to field-prepared DBSs of Arctic char generates similar trophic position estimates to those from whole blood and muscle. We suggest that DBSs could be developed as a minimally invasive sampling technique to study feeding ecology of wild fish and perhaps other organisms of interest.

Ecological responses to flow variation inform river dolphin conservation.

Many environmental flow (e-flow) studies and applications have predominantly used state-(i.e., at a single time point) and rate-(i.e., temporal change) based demographic characteristics of species representing lower trophic levels (e.g., fish communities) to build flow-ecology relationships, rather than using a process that incorporates population dynamics. Recent studies have revealed the importance of incorporating data on species traits when building flow-ecology relationships. The effects of flow on keystone megafauna species (i.e., body mass ≥ 30 kg) reverberate through entire food webs; however, the relationships between flow and these species are not well understood, limiting the scope of the relationships used in flow management. Here, we fill this gap by incorporating the habitat selection traits at different flows of a freshwater apex predator, Ganges River dolphin (GRD, Platanista gangetica gangetica), which plays a significant role in maintaining the structure, functions and integrity of the aquatic ecosystem. Using temporally and spatially measured GRD habitat selection traits, we quantified flow-ecology responses in the Karnali River of Nepal during the low-flow season when habitat was heavily reduced and water demand was highest. We define ecological responses as suitable habitat templates with enough usable surface area to support GRD fitness by improving reproduction and survival. We measured the available and occupied habitats to develop flow-ecology responses. Variation in flow resulted in substantial differences in the ecological response across time and space, suggesting that aquatic species adjusted in a variety of habitats to support their life histories and maintain viable populations. The limited availability of suitable habitats combined with uninformed water regulations by humans likely places GRDs under severe physiological stress during low-water seasons (i.e., January-April), suggesting that  reduced flows contribute to the process of endangering and extirpating highly sensitive endemic aquatic biodiversity. Our study reveals that ad hoc or experience-based flow management is no longer tenable to maintain the integrity and functionality of aquatic ecosystems. We stress that quantifying the flow-ecology relationships of foundational species, particularly megafauna, in response to flow variation is crucial for monitoring the effects of water alterations and determining the minimum flows needed for maintaining healthy and functional freshwater ecosystems in the Anthropocene.

Field application of an improved protocol for environmental DNA extraction, purification, and measurement using Sterivex filter.

Environmental DNA (eDNA) is increasingly popular as a useful non-invasive method to monitor and study biodiversity and community structure in freshwater and marine environments. To effectively extract eDNA from the filter surface is a fundamental factor determining the representativeness of the samples. We improved the eDNA extraction efficiency of an established Sterivex method by 12- to 16-fold using a larger volume of lysis buffer mix coupled with backflushing the cartridges. The DNeasy extraction column could be overloaded when the environmental sample input is high, possibly due to a higher nonspecific binding present in environmental samples, thus resulting in a relatively lower quantity measured. Therefore, we included an internal control DNA in the extraction to monitor the extraction and purification efficiencies in field samples, which is crucial for quantification of original eDNA concentration. The use of Takara Probe qPCR Mix supplemented with protein-based additives improved the robustness of the real time PCR assay on inhibitor-rich environmental samples, but prior purification by Qiagen PowerClean Pro Cleanup kit could be essential for inhibitor-rich water samples, even though the recovery rate was unexpectedly low (average 33.0%). The improved extraction and quantification complement the qualitative analyses including metabarcoding and metagenomics in field application.

Seasonal flow dynamics exacerbate overlap between artisanal fisheries and imperiled Ganges River dolphins.

Here we quantify the effects of artisanal fisheries on the ecology of a small cetacean, the Ganges River dolphin (Platanista gangetica gangetica, GRD), in a large river system of Nepal. We examine the size-classes of fisheries' catches, behavioural changes in GRD in response to fishing activities, and diel overlap between GRD and fishing activity. We observed high human exploitation rates (> 60% of the total catch per effort) of GRD-preferred prey sizes, indicating risks of high resource competition and dietary overlap, especially during the low water season when resource availability is reduced. Competitive interactions in the feeding niches during the low water season, plus temporal overlap between the peak exploitation and critical life-history events (e.g., reproduction), likely have ecological consequences. Furthermore, we detected 48% (95% CI 43-52%) increase in the chance of behavioural changes among dolphins exposed to anthropopressure (fishing activity), risking social behaviour impairment in exposed dolphins. The higher diel overlap and increased diel coefficient as the surveys progressed towards the monsoon season suggest temporal shifts in GRD socio-behavioural states and seasonal effects on resource partitioning, respectively. This work identifies drivers of small cetaceans-fisheries interactions and their consequences, and can be used to help reduce biologically significant fishing impacts on small cetaceans. Mitigation strategies, together with river sanctuary and distanced-based approaches, should be urgently included in a framework of ecosystem-based management.