NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference.
Bellot, Pau; Olsen, Catharina; Salembier, Philippe; Oliveras-Vergés, Albert; Meyer, Patrick E.
; 16: 312, 2015 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-26415849
HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation.
Benchmarking regulatory network reconstruction with GRENDEL.
iCOBRA: open, reproducible, standardized and live method benchmarking.
Netter: re-ranking gene network inference predictions using structural network properties.
GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods.
GeneSPIDER - gene regulatory network inference benchmarking with controlled network and data properties.
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking.
Adapting machine-learning algorithms to design gene circuits.
ReTRN: a retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm.
Inferring cancer subnetwork markers using density-constrained biclustering.