16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses.
Woloszynek, Stephen; Zhao, Zhengqiao; Chen, Jian; Rosen, Gail L.
PLoS Comput Biol
; 15(2): e1006721, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30807567
Metagenomic engineering of the mammalian gut microbiome in situ.
metamicrobiomeR: an R package for analysis of microbiome relative abundance data using zero-inflated beta GAMLSS and meta-analysis across studies using random effects models.
Bacterial composition of biofilms formed on dairy-processing equipment.
The effect of 16S rRNA region choice on bacterial community metabarcoding results.
Microbiota composition of dadih - a traditional fermented buffalo milk of West Sumatra.
Recentrifuge: Robust comparative analysis and contamination removal for metagenomics.
MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations.
Large-scale mapping of microbial diversity in artisanal Brazilian cheeses.
Investigating the bacterial microbiota of traditional fermented dairy products using propidium monoazide with single-molecule real-time sequencing.
Rapid analysis of metagenomic data using signature-based clustering.