Detalhe da pesquisa
1.
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolution.
Bioinformatics;
40(1)2024 01 02.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38212999
2.
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Bioinformatics;
39(4)2023 04 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36857575
3.
Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli.
PLoS Genet;
13(1): e1006590, 2017 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28129339
4.
SteadyCom: Predicting microbial abundances while ensuring community stability.
PLoS Comput Biol;
13(5): e1005539, 2017 05.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28505184
5.
Combining metabolic engineering and biocompatible chemistry for high-yield production of homo-diacetyl and homo-(S,S)-2,3-butanediol.
Metab Eng;
36: 57-67, 2016 07.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26969254
6.
Elucidation of the regulatory role of the fructose operon reveals a novel target for enhancing the NADPH supply in Corynebacterium glutamicum.
Metab Eng;
38: 344-357, 2016 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27553884
7.
Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property.
Bioinformatics;
30(22): 3232-9, 2014 Nov 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25100687
8.
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables.
Nat Microbiol;
9(3): 595-613, 2024 Mar.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38347104
9.
Integrated Profiling of Gram-Positive and Gram-Negative Probiotic Genomes, Proteomes and Metabolomes Revealed Small Molecules with Differential Growth Inhibition of Antimicrobial-Resistant Pathogens.
J Diet Suppl;
20(5): 788-810, 2023.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36099186
10.
Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks.
Bioinformatics;
27(16): 2256-62, 2011 Aug 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-21685054
11.
Metabolic Engineering Interventions for Sustainable 2,3-Butanediol Production in Gas-Fermenting Clostridium autoethanogenum.
mSystems;
7(2): e0111121, 2022 04 26.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35323044
12.
Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary Principles.
mSystems;
6(5): e0076821, 2021 Oct 26.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34609169
13.
Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production.
Metab Eng Commun;
11: e00148, 2020 Dec.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33134082
14.
Systems Biology - A Guide for Understanding and Developing Improved Strains of Lactic Acid Bacteria.
Front Microbiol;
10: 876, 2019.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31114552
15.
A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data.
Metab Eng Commun;
9: e00101, 2019 Dec.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31720216
16.
Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein.
Sci Rep;
6: 36421, 2016 11 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27824148
17.
Acetate kinase isozymes confer robustness in acetate metabolism.
PLoS One;
9(3): e92256, 2014.
Artigo
em Inglês
| MEDLINE
| ID: mdl-24638105