Detalhe da pesquisa
1.
TranSyT, an innovative framework for identifying transport systems.
Bioinformatics;
39(8)2023 08 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37589572
2.
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Bioinformatics;
39(4)2023 04 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36857575
3.
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Nucleic Acids Res;
49(D1): D575-D588, 2021 01 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32986834
4.
A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation.
Biochem Soc Trans;
48(5): 1889-1903, 2020 10 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32940659
5.
Methods for automated genome-scale metabolic model reconstruction.
Biochem Soc Trans;
46(4): 931-936, 2018 08 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30065105
6.
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Nucleic Acids Res;
49(D1): D1555, 2021 01 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33179751
7.
Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models.
Brief Bioinform;
15(4): 592-611, 2014 Jul.
Artigo
em Inglês
| MEDLINE
| ID: mdl-23422247
8.
A functional microbiome catalog crowdsourced from North American rivers.
bioRxiv;
2023 Jul 26.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37502915
9.
Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome.
Methods Mol Biol;
2349: 291-320, 2022.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34719000
10.
A genomic catalog of Earth's microbiomes.
Nat Biotechnol;
39(4): 499-509, 2021 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33169036
11.
Draft Genome Sequence of 2-Methylpyridine-, 2-Ethylpyridine-, and 2-Hydroxypyridine-Degrading Arthrobacter sp. Strain ATCC 49987.
Microbiol Resour Announc;
9(34)2020 Aug 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32816982
12.
Draft Genome Sequence of Pseudarthrobacter sp. Strain ATCC 49442 (Formerly Micrococcus luteus), a Pyridine-Degrading Bacterium.
Microbiol Resour Announc;
9(38)2020 Sep 17.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32943555
13.
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Nat Biotechnol;
38(4): 504, 2020 Apr.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32265554
14.
Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium.
Microbiol Resour Announc;
8(25)2019 Jun 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31221646
15.
A pathway for every product? Tools to discover and design plant metabolism.
Plant Sci;
273: 61-70, 2018 Aug.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29907310
16.
Reconstruction and Analysis of Central Metabolism in Microbes.
Methods Mol Biol;
1716: 111-129, 2018.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29222751
17.
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data.
Front Microbiol;
7: 275, 2016.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27047450
18.
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.
Front Microbiol;
7: 1819, 2016.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27933038
19.
Author Correction: A genomic catalog of Earth's microbiomes.
Nat Biotechnol;
39(4): 521, 2021 Apr.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33795890
20.
Publisher Correction: A genomic catalog of Earth's microbiomes.
Nat Biotechnol;
39(4): 520, 2021 Apr.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33208936