Detalhe da pesquisa
1.
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe.
Genome Res;
2023 Jul 19.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37468308
2.
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling.
Metab Eng;
83: 24-38, 2024 May.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38460783
3.
Insights into the potential for mutualistic and harmful host-microbe interactions affecting brown alga freshwater acclimation.
Mol Ecol;
32(3): 703-723, 2023 Feb.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36326449
4.
Metagenomic assessment of the global diversity and distribution of bacteria and fungi.
Environ Microbiol;
23(1): 316-326, 2021 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33185929
5.
Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host-microbial interactions.
Biochem Soc Trans;
48(3): 901-913, 2020 06 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32379295
6.
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia.
Bioinformatics;
34(17): i934-i943, 2018 09 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30423063
7.
Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.
PLoS Comput Biol;
14(5): e1006146, 2018 05.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29791443
8.
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.
PLoS Comput Biol;
13(1): e1005276, 2017 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28129330
9.
Crystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum.
Biochim Biophys Acta;
1844(2): 422-9, 2014 Feb.
Artigo
em Inglês
| MEDLINE
| ID: mdl-24316252
10.
Community-scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing.
Microb Biotechnol;
17(1): e14396, 2024 Jan.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38243750
11.
Enterosignatures define common bacterial guilds in the human gut microbiome.
Cell Host Microbe;
31(7): 1111-1125.e6, 2023 07 12.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37339626
12.
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines.
PeerJ;
9: e11344, 2021.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33996285
13.
Dispersal strategies shape persistence and evolution of human gut bacteria.
Cell Host Microbe;
29(7): 1167-1176.e9, 2021 07 14.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34111423
14.
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes.
Comput Struct Biotechnol J;
18: 1722-1734, 2020.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32670511
15.
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.
Elife;
92020 12 29.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33372654
16.
The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga.
Mar Genomics;
52: 100740, 2020 Aug.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31937506
17.
Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus.
Antioxidants (Basel);
8(11)2019 Nov 16.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31744163
18.
Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks.
PeerJ;
5: e3860, 2017.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29038751