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1.
Phys Rev Lett ; 118(6): 067402, 2017 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-28234536

RESUMO

After photon absorption, electrons from a dispersive band of a solid require a finite time in the photoemission process before being photoemitted as free particles, in line with recent attosecond-resolved photoemission experiments. According to the Eisenbud-Wigner-Smith model, the time delay is due to a phase shift of different transitions that occur in the process. Such a phase shift is also at the origin of the angular dependent spin polarization of the photoelectron beam, observable in spin degenerate systems without angular momentum transfer by the incident photon. We propose a semiquantitative model which permits us to relate spin and time scales in photoemission from condensed matter targets and to better understand spin- and angle-resolved photoemission spectroscopy (SARPES) experiments on spin degenerate systems. We also present the first experimental determination by SARPES of this time delay in a dispersive band, which is found to be greater than 26 as for electrons emitted from the sp-bulk band of the model system Cu(111).

2.
Opt Express ; 19(3): 2797-804, 2011 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-21369101

RESUMO

We report a femtosecond crystallographic study of the dependence of the free-carries generation to the alignment of a crystalline sample to the laser polarization. The probe pulse transmission exhibits a π/2 modulation that is shown to be correlated with the direction dependence of the effective electron mass. This observation suggests that nonlinear ionization is the first channel for free electron generation during the laser pulse. Moreover, the temporal evolution of the probe pulse transmission indicates the dominance of the avalanche ionization and that nonlinear ionization provides the initial seed electrons for avalanche."


Assuntos
Cristalografia/métodos , Fluoretos/química , Compostos de Lítio/química , Refratometria/métodos , Luz , Espalhamento de Radiação
3.
J Exp Med ; 197(1): 41-9, 2003 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-12515812

RESUMO

Platelet adhesion and aggregation at sites of vascular injury is crucial for hemostasis but may lead to arterial occlusion in the setting of atherosclerosis and precipitate diseases such as myocardial infarction. A current hypothesis suggests that platelet glycoprotein (GP) Ib interaction with von Willebrand factor recruits flowing platelets to the injured vessel wall, where subendothelial fibrillar collagens support their firm adhesion and activation. However, so far this hypothesis has not been tested in vivo. Here, we demonstrate by intravital fluorescence microscopy of the mouse carotid artery that inhibition or absence of the major platelet collagen receptor, GPVI, abolishes platelet-vessel wall interactions after endothelial denudation. Unexpectedly, inhibition of GPVI by the monoclonal antibody JAQ1 reduced platelet tethering to the subendothelium by approximately 89%. In addition, stable arrest and aggregation of platelets was virtually abolished under these conditions. Using different models of arterial injury, the strict requirement for GPVI in these processes was confirmed in GPVI-deficient mice, where platelets also failed to adhere and aggregate on the damaged vessel wall. These findings reveal an unexpected role of GPVI in the initiation of platelet attachment at sites of vascular injury and unequivocally identify platelet-collagen interactions (via GPVI) as the major determinant of arterial thrombus formation.


Assuntos
Plaquetas/fisiologia , Artérias Carótidas/patologia , Glicoproteínas da Membrana de Plaquetas/metabolismo , Animais , Plaquetas/metabolismo , Adesão Celular , Movimento Celular , Colágeno/metabolismo , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Agregação Plaquetária , Glicoproteínas da Membrana de Plaquetas/deficiência , Glicoproteínas da Membrana de Plaquetas/genética , Ferimentos e Lesões/patologia
4.
Mamm Genome ; 21(1-2): 13-27, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20033184

RESUMO

A new spontaneous mouse mutant was characterized by closed eyelids at weaning and without apparent eyes (provisional gene name, eyeless; provisional gene symbol, eyl). The mutation follows a recessive pattern of inheritance and was mapped to the region of chromosome 19 containing Pitx3. Genetic complementation tests using Pitx3 ( ak/+ ) mice confirmed eyl as a new allele of Pitx3 (Pitx3 ( eyl )). Sequencing of the Pitx3 gene in eyl mutants identified an inserted G after cDNA position 416 (416insG; exon 4). The shifted open reading frame is predicted to result in a hybrid protein still containing the Pitx3 homeobox, but followed by 121 new amino acids. The novel Pitx3 ( eyl/eyl ) mutants expressed ophthalmological and brain defects similar to Pitx3 ( ak/ak ) mice: microphthalmia or anophthalmia and loss of dopamine neurons of the substantia nigra. In addition, we observed in the homozygous eyeless mutants increased extramedullary hematopoiesis in the spleen, frequently liver steatosis, and reduced body weight. There were also several behavioral changes in the homozygous mutants, including reduced forelimb grip strength and increased nociception. In addition to these alterations in both sexes, we observed in female Pitx3 ( eyl/eyl ) mice increased anxiety-related behavior, reduced locomotor activity, reduced object exploration, and increased social contacts; however, we observed decreased anxiety-related behavior and increased arousal in males. Most of these defects identified in the new Pitx3 mutation are observed in Parkinson patients, making the Pitx3 ( eyl ) mutant a valuable new model. It is the first mouse mutant carrying a point mutation within the coding region of Pitx3.


Assuntos
Camundongos Mutantes/genética , Microftalmia/genética , Dor/genética , Transtornos Parkinsonianos/genética , Sequência de Aminoácidos , Animais , Anoftalmia/genética , Sequência de Bases , Comportamento Animal , Densidade Óssea , Doenças Ósseas/genética , Doenças Ósseas/fisiopatologia , Mapeamento Cromossômico , Proteínas da Membrana Plasmática de Transporte de Dopamina/genética , Fígado Gorduroso/genética , Fígado Gorduroso/fisiopatologia , Feminino , Proteínas de Homeodomínio/genética , Pneumopatias/genética , Pneumopatias/fisiopatologia , Masculino , Camundongos , Camundongos Endogâmicos C3H , Dados de Sequência Molecular , Mutação Puntual , Tirosina 3-Mono-Oxigenase/genética
5.
Circ Res ; 98(2): e2-10, 2006 Feb 03.
Artigo em Inglês | MEDLINE | ID: mdl-16373597

RESUMO

The homing and differentiation mechanisms of endothelial progenitor cells (EPCs) at sites of vascular lesions are unclear. To investigate whether platelets play a role in the recruitment and differentiation of EPCs, we made use of a robust mouse embryonic EPC (eEPC) line that reliably differentiates to a mature endothelial phenotype. We found that platelets stimulate chemotaxis and migration of these murine eEPCs. Further, the substantial adhesion of murine eEPCs on immobilized platelets that occurs under dynamic flow conditions is inhibited by neutralizing anti-P-selectin glycoprotein ligand-1 and anti-VLA-4 (beta1-integrin) monoclonal antibodies but not by anti-CD11b (aM-integrin; macrophage antigen-1). Coincubation of murine eEPCs with platelets for 5 days induced differentiation of EPCs to mature endothelial cells as verified by positive von Willebrand factor immunofluorescence and detection of Weibel Palade bodies through electron microscopy. We conclude that platelets may play a critical part in the capture and subsequent differentiation of murine eEPCs at sites of vascular lesions, revealing a possible new role of platelets in neoendothelization after vascular injury.


Assuntos
Plaquetas/fisiologia , Diferenciação Celular , Embrião de Mamíferos/citologia , Células Endoteliais/citologia , Células-Tronco/citologia , Animais , Complexo CD3/análise , Movimento Celular , Células Cultivadas , Quimiotaxia , Humanos , Camundongos , Adesividade Plaquetária
6.
Science ; 357(6357): 1274-1277, 2017 09 22.
Artigo em Inglês | MEDLINE | ID: mdl-28935802

RESUMO

Attosecond time-resolved photoemission spectroscopy reveals that photoemission from solids is not yet fully understood. The relative emission delays between four photoemission channels measured for the van der Waals crystal tungsten diselenide (WSe2) can only be explained by accounting for both propagation and intra-atomic delays. The intra-atomic delay depends on the angular momentum of the initial localized state and is determined by intra-atomic interactions. For the studied case of WSe2, the photoemission events are time ordered with rising initial-state angular momentum. Including intra-atomic electron-electron interaction and angular momentum of the initial localized state yields excellent agreement between theory and experiment. This has required a revision of existing models for solid-state photoemission, and thus, attosecond time-resolved photoemission from solids provides important benchmarks for improved future photoemission models.

8.
Circ Res ; 95(5): e36-44, 2004 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-15297382

RESUMO

The possibility of evaluating the function of transgenes in platelets requires the generation of platelets from nucleated progenitor cells in vitro. In this article, we provide effective culture conditions for generating functional culture-derived (CD) human and mouse platelets from CD34(+) progenitor cells that allow expression of any foreign protein of interest. We have evolved an effective cytokine cocktail (thrombopoietin, stem cell factor, interleukin [IL]-1beta, IL-6) that induces a high yield of CD platelets and optimal shedding from cultivated megakaryocytes generated from CD34(+) progenitor cells. CD platelets showed similar functional and morphological characteristics compared with isolated blood platelets, including surface expression of platelet antigens (CD41, CD42, CD62P), aggregation, release of granule constituents (P-selectin, platelet factor 4, serotonin). Moreover, transmission electron microscopy revealed the presence of typical alpha- and dense granules and dense tubular system in CD platelets. Additionally, we showed that stable transgene expression in CD platelets can be performed through infection of CD34(+) progenitor cells using adenoviral vectors. Thus, we describe a methodology that enables studying functional consequences of transgenes of interest in the natural environment of platelets that may impose substantial impact on potential future platelet research and therapeutic target evaluation. The full text of this article is available online at http://circres.ahajournals.org.


Assuntos
Antígenos CD34/análise , Plaquetas/citologia , Plaquetas/metabolismo , Células-Tronco Hematopoéticas/fisiologia , Transgenes , Adenoviridae/genética , Animais , Plaquetas/fisiologia , Técnicas de Cultura de Células , Degranulação Celular , Células Cultivadas , Vetores Genéticos , Células-Tronco Hematopoéticas/química , Células-Tronco Hematopoéticas/citologia , Humanos , Camundongos , Complexo Glicoproteico GPIIb-IIIa de Plaquetas/metabolismo , Trombopoese
9.
FASEB J ; 18(2): 397-9, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-14656994

RESUMO

Platelet-collagen interactions play a fundamental role in the process of arterial thrombosis. The major platelet collagen receptor is the glycoprotein VI (GPVI). Here, we determined the effects of a soluble dimeric form of GPVI on platelet adhesion in vitro and in vivo. We fused the extracellular domain of GPVI with the human immunoglobulin Fc domain. The soluble dimeric form of GPVI (GPVI-Fc) specifically bound to immobilized collagen. Binding of GPVI-Fc to collagen was inhibited competitively by soluble GPVI-Fc, but not control Fc lacking the external GPVI domain. GPVI-Fc inhibited the adhesion of CHO cells that stably express human GPVI and of platelets on collagen and attenuated thrombus formation under shear conditions in vitro. To test the effects of GPVI-Fc in vivo, arterial thrombosis was induced in the mouse carotid artery, and platelet-vessel wall interactions were visualized by intravital fluorescence microscopy. Infusion of GPVI-Fc but not of control Fc virtually abolished stable arrest and aggregation of platelets following vascular injury. Importantly, GPVI-Fc but not control Fc, was detected at areas of vascular injury. These findings further substantiate the critical role of the collagen receptor GPVI in the initiation of thrombus formation at sites of vascular injury and identify soluble GPVI as a promising antithrombotic strategy.


Assuntos
Plaquetas/fisiologia , Artérias Carótidas/metabolismo , Artérias Carótidas/patologia , Adesividade Plaquetária , Agregação Plaquetária , Glicoproteínas da Membrana de Plaquetas/química , Glicoproteínas da Membrana de Plaquetas/metabolismo , Animais , Tempo de Sangramento , Células CHO , Clonagem Molecular , Colágeno/metabolismo , Cricetinae , Dimerização , Humanos , Fragmentos Fc das Imunoglobulinas/química , Fragmentos Fc das Imunoglobulinas/genética , Fragmentos Fc das Imunoglobulinas/metabolismo , Camundongos , Contagem de Plaquetas , Glicoproteínas da Membrana de Plaquetas/genética , Glicoproteínas da Membrana de Plaquetas/isolamento & purificação , Ligação Proteica , Reologia , Solubilidade , Trombose
10.
J Biotechnol ; 112(1-2): 47-63, 2004 Aug 26.
Artigo em Inglês | MEDLINE | ID: mdl-15288940

RESUMO

Paramagnetic carriers, which are linked to antibodies enable highly specific biological cell separations. With the colloidal synthesis of superparamagnetic Co and FeCo nanocrystals with superior magnetic moments the question about their potential to replace magnetite as the magnetically responsive component of magnetic beads is addressed. Starting from a magnetic analysis of the corresponding magnetophoretic mobility of Co and FeCo based alloys their synthesis and resulting microstructural and magnetic properties as function of the underlying particle size distribution are discussed in detail. The stability of the oleic acid ligand of Co nanocrystals has been investigated. The oxidation kinetics were quantified using magnetic measurements. As a result, this ligand system provides sufficient protection against oxidation. Furthermore, the kinetics of the synthesis of Fe(50)Co(50) nanoparticles has been monitored employing Fourier transform infra red (FT-IR) spectroscopy and is modeled using a consecutive decomposition and growth model. This model predicts the experimentally realized FeCo nanoparticle composition as a function of the particle size fairly well. High-resolution transmission electron microscopy (HRTEM) was performed to uncover the resulting microstructure and composition on a nanometer scale.


Assuntos
Biopolímeros/análise , Cobalto/química , Ferro/química , Magnetismo , Micromanipulação/métodos , Nanotecnologia/métodos , Nanotubos/química , Nanotubos/ultraestrutura , Ligas , Biopolímeros/química , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/métodos , Biotecnologia/instrumentação , Biotecnologia/métodos , Cobalto/efeitos da radiação , Cristalização/métodos , Relação Dose-Resposta à Radiação , Campos Eletromagnéticos , Separação Imunomagnética/instrumentação , Separação Imunomagnética/métodos , Ferro/efeitos da radiação , Micromanipulação/instrumentação , Microesferas , Conformação Molecular , Nanotecnologia/instrumentação , Tamanho da Partícula , Propriedades de Superfície , Transdutores
11.
Oecologia ; 5(1): 19-55, 1970 Mar.
Artigo em Alemão | MEDLINE | ID: mdl-28310347

RESUMO

1. Alytes o. obstetricans produces calls from the beginning of April to the end of August on a gravel slope near Tübingen. The annual calling activity is divided into four calling periods of different lengths. They are largely independent of weather conditions. 2. The calling activity is based on an endogenous rhythm which is influenced by two exogenous factors, air temperature and light intensity. The lower temperature threshold of calling activity is about 7° C and the upper one about 26° C. The "Zeitgeber" (artificial light-dark cycle) can synchronize the endogenous rhythm in any way. The calling and physical activity take place during the dark phase and correspond to a "Bigeminus". 3. Male Alytes produce six functionally different calls: a slowly repeated mating call, a rapidly repeated mating call, two calls of excitement, a release call and a distress call. Female Alyies can likewise produce calls, although of only two types: a mating call and a distress call. The calls of both sexes represent harmonic frequencies, with the exception of the release call and the distress call. 4. The mating call is characterised by the following parameters: repetition rate of calls, fundamental frequency, duration of calls and sound level, all of which vary with a change in air temperature. With increasing air temperature, the repetition rate of calls and the fundamental frequency follow a positive linear regression: the duration of call, on the other hand, becomes logarithmically shorter. There is a rough linear correlation between increasing air temperature and increasing sound level. The fundamental frequency and duration of call also vary with the size of the animals. 5. The larynx of Alytes consists of one cricoid and two arytaenoids. Three pairs of muscles are inserted on the larynx cartilage: M. dilatator laryngis, M. sphincter and M. hyo-laryngeus. These are innervated by two branches of the N. vagus: the R. laryngeus longus and the R. laryngeus brevis.

12.
Nanoscale Res Lett ; 9(1): 60, 2014 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-24495692

RESUMO

Monolayers and submonolayers of [MnIII6CrIII]3+ single-molecule magnets (SMMs) adsorbed on highly oriented pyrolytic graphite (HOPG) using the droplet technique characterized by non-contact atomic force microscopy (nc-AFM) as well as by Kelvin probe force microscopy (KPFM) show island-like structures with heights resembling the height of the molecule. Furthermore, islands were found which revealed ordered 1D as well as 2D structures with periods close to the width of the SMMs. Along this, islands which show half the heights of intact SMMs were observed which are evidences for a decomposing process of the molecules during the preparation. Finally, models for the structure of the ordered SMM adsorbates are proposed to explain the observations.

13.
J Phys Condens Matter ; 24(17): 173001, 2012 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-22480989

RESUMO

The existence of highly spin polarized photoelectrons emitted from non-magnetic solids as well as from unpolarized atoms and molecules has been found to be very common in many studies over the past 40 years. This so-called Fano effect is based upon the influence of the spin-orbit interaction in the photoionization or the photoemission process. In a non-angle-resolved photoemission experiment, circularly polarized radiation has to be used to create spin polarized photoelectrons, while in angle-resolved photoemission even unpolarized or linearly polarized radiation is sufficient to get a high spin polarization. In past years the Rashba effect has become very important in the angle-resolved photoemission of solid surfaces, also with an observed high photoelectron spin polarization. It is the purpose of the present topical review to cross-compare the spin polarization experimentally found in angle-resolved photoelectron emission spectroscopy of condensed matter with that of free atoms, to compare it with the Rashba effect and topological insulators to describe the influence and the importance of the spin-orbit interaction and to show and disentangle the matrix element and phase shift effects therein.The relationship between the energy dispersion of these phase shifts and the emission delay of photoelectron emission in attosecond-resolved photoemission is also discussed. Furthermore the influence of chiral structures of the photo-effect target on the spin polarization, the interferences of different spin components in coherent superpositions in photoemission and a cross-comparison of spin polarization in photoemission from non-magnetic solids with XMCD on magnetic materials are presented; these are all based upon the influence of the spin-orbit interaction in angle-resolved photoemission.


Assuntos
Espectroscopia Fotoeletrônica/métodos , Algoritmos , Cobre/química , Elétrons , Desenho de Equipamento , Luz , Magnetismo , Fotoquímica/métodos , Fótons , Probabilidade , Detecção de Spin/métodos
14.
Nanoscale Res Lett ; 6: 486, 2011 Aug 08.
Artigo em Inglês | MEDLINE | ID: mdl-21824398

RESUMO

We report on the characterization of various salts of [MnIII6CrIII]3+ complexes prepared on substrates such as highly oriented pyrolytic graphite (HOPG), mica, SiO2, and Si3N4. [MnIII6CrIII]3+ is a single-molecule magnet, i.e., a superparamagnetic molecule, with a blocking temperature around 2 K. The three positive charges of [MnIII6CrIII]3+ were electrically neutralized by use of various anions such as tetraphenylborate (BPh4-), lactate (C3H5O3-), or perchlorate (ClO4-). The molecule was prepared on the substrates out of solution using the droplet technique. The main subject of investigation was how the anions and substrates influence the emerging surface topology during and after the preparation. Regarding HOPG and SiO2, flat island-like and hemispheric-shaped structures were created. We observed a strong correlation between the electronic properties of the substrate and the analyzed structures, especially in the case of mica where we observed a gradient in the analyzed structures across the surface.

15.
J Phys Condens Matter ; 23(26): 266001, 2011 Jul 06.
Artigo em Inglês | MEDLINE | ID: mdl-21673400

RESUMO

Properties of the manganese-based single-molecule magnet [Mn(6)(III)Cr(III)](3+) are studied. It contains six Mn(III) ions arranged in two bowl-shaped trinuclear triplesalen building blocks linked by a hexacyanochromate and exhibits a large spin ground state of S(t) = 21/2. The dominant structures in the electron emission spectra of [Mn(6)(III)Cr(III)](3+) resonantly excited at the L(3)-edge are the L(3)M(2, 3)M(2, 3), L(3)M(2, 3)V and L(3)VV Auger emission groups following the decay of the primary p(3/2) core hole state. Significant differences of the Auger spectra from intact and degraded [Mn(6)(III)Cr(III)](3+) show up. First measurements of the electron spin polarization in the L(3)M(2, 3)V and L(3)VV Auger emission peaks from the manganese constituents in [Mn(6)(III)Cr(III)](3+) resonantly excited at the L(3)-edge near 640 eV by circularly polarized synchrotron radiation are reported. In addition spin resolved Auger electron spectra of the reference substances MnO, Mn(2)O(3) and Mn(II)(acetate)(2)·4H(2)O are given. The applicability of spin resolved electron spectroscopy for characterizing magnetic states of constituent atoms compared to magnetic circular dichroism (MCD) is verified: the spin polarization obtained from Mn(II)(acetate)(2)·4H(2)O at room temperature in the paramagnetic state compares to the MCD asymmetry revealed for a star-shaped molecule with a Mn(4)(II)O(6) core at 5 K in an external magnetic field of 5 T.

16.
J Phys Chem B ; 114(10): 3482-7, 2010 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-20180520

RESUMO

Here we present detailed investigations of UV-photoinduced dimerization of anthracene substructures without solvent environment at the level of molecular monolayers prepared on a surface. Monolayers prepared on silicon(100) substrates were analyzed by means of X-ray photoelectron spectroscopy (XPS) in the valence band region revealing significant changes in the carbon C 2s region (11-20 eV). SVWN DFT calculations were performed to understand the influence of the structural changes by dimerization. The geometric structure of the functionality was retrieved through B3LYP DFT calculations, which were performed ahead of the SVWN DFT ones, and the result of these calculations matches with the measured vibration signature. FTIR investigations of polybutadiene (PBD) volume backboned functionality were performed before and after irradiation.


Assuntos
Antracenos/química , Silício/química , Butadienos/química , Dimerização , Elastômeros/química , Processos Fotoquímicos , Espectroscopia Fotoeletrônica , Espectroscopia de Infravermelho com Transformada de Fourier , Raios Ultravioleta
17.
Biol Reprod ; 74(2): 246-52, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16221989

RESUMO

The aim of this study was to estimate the risk of mouse hepatitis virus (MHV) transmission by the in vitro fertilization and embryo transfer (IVF-ET) procedure. In addition, resistance to infection of zona-intact and laser-microdissected oocytes was compared. For this purpose, infectious mouse hepatitis virus, a common viral pathogen in mouse facilities, was used. Oocytes having an intact or laser-microdissected zona pellucida were incubated for fertilization in media containing MHV-A59 and resulting embryos were transferred to the oviduct of specific pathogen-free (SPF) Swiss recipients. The oocytes were divided into three experimental groups: 1) zona-intact oocytes continuously exposed to MHV in fertilization (HTF), culture (KSOM), and embryo transfer (M2) media; 2) zona-intact oocytes exposed to MHV in HTF medium and transferred after a standard washing procedure with virus-free KSOM and M2; and 3) laser-microdissected oocytes exposed to MHV in HTF medium and transferred after a standard washing procedure with virus-free KSOM and M2. Respective serum samples of embryo recipients and their offspring were tested for MHV antibodies using ELISA. In experiment 1, 10 out of 14 embryo recipients seroconverted to MHV and only their offspring (8 of 19) received maternal antibodies. In experiments 2 and 3, MHV antibodies were detected neither in the recipients nor in the offspring. These results indicate, for the first time, that even if the zona pellucida is partially disrupted by laser microdissection, the transmission of MHV-A59 can be avoided by correctly performed washing steps in the IVF-ET procedure.


Assuntos
Transferência Embrionária , Fertilização in vitro/métodos , Hepatite Viral Animal/transmissão , Oócitos/fisiologia , Zona Pelúcida , Animais , Animais Recém-Nascidos/virologia , Coeficiente de Natalidade , Feminino , Hepatite Viral Animal/imunologia , Lasers , Camundongos , Camundongos Endogâmicos C3H , Vírus da Hepatite Murina/patogenicidade , Oócitos/virologia , Gravidez , Medição de Risco
18.
Acta Neuropathol ; 112(3): 267-76, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16791600

RESUMO

Disturbance of intracellular trafficking plays a major role in several neurodegenerative disorders including Alzheimer or Parkinson's disease. The Chediak-Higashi syndrome (CHS), a life-threatening autosomal recessive disease with frequent mutations in the LYST gene, and its animal model, the beige mouse, are both characterized by lysosomal defects with accumulation of giant lysosomes. Clinically they manifest as hypopigmentation, abnormal bleeding and increased susceptibility to infection with various degrees of involvement of the nervous system. In the course of a recessive N-ethyl-N-nitrosurea (ENU) mutagenesis screen, we identified the first murine missense mutation in the lysosomal trafficking regulator gene (Lyst(Ing3618)) located at a highly conserved position in the WD40 protein domain. Nearly all described human Lyst alleles lead to protein truncation and fatal childhood CHS. Only four different missense mutations have been reported in patients with adolescent or adult forms of CHS involving the nervous system. Interestingly, the Lyst(Ing3618) model presents with a predominant neurodegenerative phenotype with progressive degeneration and loss of Purkinje cells and lacks severe impairment of the immune system. Therefore, the Lyst(Ing3618 )allele could represent a new model for adult CHS with neurological impairment. It could also provide an important tool to elucidate the role of neuronal lysosomal trafficking in the pathophysiology of neurodegeneration.


Assuntos
Proteínas dos Microfilamentos/genética , Mutação de Sentido Incorreto/fisiologia , Degeneração Neural/genética , Proteínas/genética , Células de Purkinje/patologia , Sequência de Aminoácidos , Animais , Calbindinas , Mapeamento Cromossômico , Clonagem Molecular , DNA/genética , Imuno-Histoquímica , Peptídeos e Proteínas de Sinalização Intracelular , Camundongos , Camundongos Endogâmicos C3H , Camundongos Endogâmicos C57BL , Microscopia Eletrônica , Dados de Sequência Molecular , Degeneração Neural/patologia , Reação do Ácido Periódico de Schiff , Fenótipo , Proteína G de Ligação ao Cálcio S100/metabolismo , Proteínas de Transporte Vesicular
19.
Bioinformatics ; 21(8): 1393-400, 2005 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-15591356

RESUMO

MOTIVATION: Owing to its increased tag length, LongSAGE tags are expected to be more reliable in direct assignment to genome sequences. Therefore, we evaluated the use of LongSAGE data in genome annotation by using our LongSAGE dataset of 202 015 tags (consisting of 41 718 unique tags), experimentally generated from mouse embryonic tail libraries. RESULTS: A fraction of LongSAGE tags could not be unambiguously assigned to its gene, due to the presence of widely conserved sequences downstream of particular CATG anchor sites. The presence of alternative forms of transcripts was confirmed in 45% of all detected genes. Surprisingly, a large fraction of LongSAGE tags with hits to the genome (66%) could not be assigned to any gene annotated in EnsEMBL. Among such cases, 2098 LongSAGE tags fell into a region containing a putative gene predicted by GenScan, providing experimental evidence for the presence of real genes, while 9112 genes were found out to be left out or wrongly annotated by the EnsEMBL pipeline. CONCLUSIONS: LongSAGE transcriptome data can significantly improve the genome annotation by identifying novel genes and alternative transcripts, even in the case of thus far best-characterized organisms like the mouse. CONTACT: imai@gsf.de.


Assuntos
Algoritmos , Processamento Alternativo/genética , Mapeamento Cromossômico/métodos , Bases de Dados Genéticas , Perfilação da Expressão Gênica/métodos , Alinhamento de Sequência/métodos , Análise de Sequência de DNA/métodos , Fatores de Transcrição/genética , Animais , DNA Antissenso/genética , Éxons/genética , Camundongos , Camundongos Endogâmicos C57BL
20.
Bioinformatics ; 21(8): 1389-92, 2005 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-15585522

RESUMO

MOTIVATION: Despite the increasing notions of the functional importance of antisense transcripts in gene regulation, the genome-wide overview on the ontology of antisense genes has not been obtained. Therefore, we tried to find novel antisense genes genome-wide by using our LongSAGE dataset of 202 015 tags (consisting of 41 718 unique tags), experimentally generated from mouse embryonic tail libraries. RESULTS: We identified 1260 potential antisense genes, of which 1001 are not annotated in EnsEMBL, thereby being regarded as novel. Interestingly their sense counterparts were co-expressed in the majority of the cases. CONCLUSIONS: The use of LongSAGE transcriptome data is extremely powerful in the identification of thus-far unknown antisense transcripts, even in the case of well-characterized organisms like the mouse. CONTACT: imai@gsf.de.


Assuntos
Algoritmos , Mapeamento Cromossômico/métodos , DNA Antissenso/genética , Bases de Dados Genéticas , Perfilação da Expressão Gênica/métodos , Alinhamento de Sequência/métodos , Análise de Sequência de DNA/métodos , Animais , Camundongos , Camundongos Endogâmicos C57BL
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