Detalhe da pesquisa
1.
TranSyT, an innovative framework for identifying transport systems.
Bioinformatics;
39(8)2023 08 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37589572
2.
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Bioinformatics;
39(4)2023 04 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36857575
3.
The number of catalytic cycles in an enzyme's lifetime and why it matters to metabolic engineering.
Proc Natl Acad Sci U S A;
118(13)2021 03 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33753504
4.
ORT: a workflow linking genome-scale metabolic models with reactive transport codes.
Bioinformatics;
38(3): 778-784, 2022 01 12.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34726691
5.
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Nucleic Acids Res;
49(D1): D575-D588, 2021 01 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32986834
6.
Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions.
Metab Eng;
69: 302-312, 2022 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34958914
7.
The Moderately (D)efficient Enzyme: Catalysis-Related Damage In Vivo and Its Repair.
Biochemistry;
60(47): 3555-3565, 2021 11 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34729986
8.
Long-term phenotypic evolution of bacteria.
Nature;
517(7534): 369-72, 2015 Jan 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25363780
9.
PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency.
Plant J;
95(6): 1102-1113, 2018 09.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29924895
10.
Respiratory energy demands and scope for demand expansion and destruction.
Plant Physiol;
191(4): 2093-2103, 2023 Apr 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36271857
11.
A plastidial pantoate transporter with a potential role in pantothenate synthesis.
Biochem J;
475(4): 813-825, 2018 02 28.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29382740
12.
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
Nucleic Acids Res;
45(D1): D535-D542, 2017 01 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27899627
13.
Methods for automated genome-scale metabolic model reconstruction.
Biochem Soc Trans;
46(4): 931-936, 2018 08 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30065105
14.
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Nucleic Acids Res;
49(D1): D1555, 2021 01 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33179751
15.
Generation and Validation of the iKp1289 Metabolic Model for Klebsiella pneumoniae KPPR1.
J Infect Dis;
215(suppl_1): S37-S43, 2017 Feb 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28375518
16.
Metabolite damage and repair in metabolic engineering design.
Metab Eng;
44: 150-159, 2017 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29030275
17.
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.
PLoS Comput Biol;
12(1): e1004705, 2016 Jan.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26821166
18.
Co-occurrence of analogous enzymes determines evolution of a novel (ßα)8-isomerase sub-family after non-conserved mutations in flexible loop.
Biochem J;
473(9): 1141-52, 2016 05 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26929404
19.
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.
Proc Natl Acad Sci U S A;
111(26): 9645-50, 2014 Jul 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-24927599
20.
Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction.
J Cell Physiol;
231(11): 2339-45, 2016 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27186840