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1.
Arterioscler Thromb Vasc Biol ; 43(2): 286-299, 2023 02.
Artigo em Inglês | MEDLINE | ID: mdl-36546321

RESUMO

BACKGROUND: Long noncoding RNAs (lncRNAs) have emerged as novel regulators of macrophage biology and inflammatory cardiovascular diseases. However, studies focused on lncRNAs in human macrophage subtypes, particularly human lncRNAs that are not conserved in rodents, are limited. METHODS: Through RNA-sequencing of human monocyte-derived macrophages, we identified suppressor of inflammatory macrophage apoptosis lncRNA (SIMALR). Lipopolysaccharide/IFNγ (interferon γ) stimulated human macrophages were treated with SIMALR antisense oligonucleotides and subjected to RNA-sequencing to investigate the function of SIMALR. Western blots, luciferase assay, and RNA immunoprecipitation were performed to validate function and potential mechanism of SIMALR. RNAscope was performed to identify SIMALR expression in human carotid atherosclerotic plaques. RESULTS: RNA-sequencing of human monocyte-derived macrophages identified SIMALR, a human macrophage-specific long intergenic noncoding RNA that is highly induced in lipopolysaccharide/IFNγ-stimulated macrophages. SIMALR knockdown in lipopolysaccharide/IFNγ stimulated THP1 human macrophages induced apoptosis of inflammatory macrophages, as shown by increased protein expression of cleaved PARP (poly[ADP-ribose] polymerase), caspase 9, caspase 3, and Annexin V+. RNA-sequencing of control versus SIMALR knockdown in lipopolysaccharide/IFNγ-stimulated macrophages showed Netrin-1 (NTN1) to be significantly decreased upon SIMALR knockdown. We confirmed that NTN1 knockdown in lipopolysaccharide/IFNγ-stimulated macrophages induced apoptosis. The SIMALR knockdown-induced apoptotic phenotype was rescued by adding recombinant NTN1. NTN1 promoter-luciferase reporter activity was increased in HEK293T (human embryonic kidney 293) cells treated with lentiviral overexpression of SIMALR. NTN1 promoter activity is known to require HIF1α (hypoxia-inducible factor 1 subunit alpha), and our studies suggest that SIMALR may interact with HIF1α to regulate NTN1 transcription, thereby regulating macrophages apoptosis. SIMALR was found to be expressed in macrophages in human carotid atherosclerotic plaques of symptomatic patients. CONCLUSIONS: SIMALR is a nonconserved, human macrophage lncRNA expressed in atherosclerosis that suppresses macrophage apoptosis. SIMALR partners with HIF1α (hypoxia-inducible factor 1 subunit alpha) to regulate NTN1, which is a known macrophage survival factor. This work illustrates the importance of interrogating the functions of human lncRNAs and exploring their translational and therapeutic potential in human atherosclerosis.


Assuntos
Aterosclerose , Placa Aterosclerótica , RNA Longo não Codificante , Humanos , RNA Longo não Codificante/metabolismo , Placa Aterosclerótica/metabolismo , Lipopolissacarídeos , Netrina-1 , Células HEK293 , Macrófagos/metabolismo , Aterosclerose/metabolismo , Apoptose , Fator 1 Induzível por Hipóxia
2.
Chem Biodivers ; 21(5): e202400075, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38466656

RESUMO

In the present work, we synthesized a small library of 2-phenylindolizine acetamide derivatives 7a-i and studied their biological activity. The synthesis was accomplished starting with easily available starting material phenacyl bromide 1 proceeding through the key intermediate 6-methyl-7-nitro-2-phenylindolizine 4. All the compounds 7a-i were characterized using spectroscopy viz., 1H-NMR, 13C NMR, FTIR, and mass spectrometry. Interestingly, 2-phenylindolizine scaffolds 7c, 7f and 7g revealed a remarkable antibacterial activity against relevant organisms S. aureus, E. coli, S. pneumoniae, P. aeruginosa. The target compounds 7e and 7h showed excellent anticancer activity against Colo-205 and MDA-MB-231 cell lines with IC50 values of 68.62, 62.91, 54.23 and 46.34 µM respectively. Additionally, all the 2-phenylindolizine acetamide derivatives 7a-i were subjected to molecular docking prediction by Autodock 4.2. Compounds 7a, 7f and 7c exhibited very good hydrogen bonding amino acid interactions Asp83 (2.23 Å), Asp83 (2.08 Å), His74 (2.05 Å), His76 (1.71 Å), Ser80 (1.05 Å) with active site of Topoisomerase-IV from S. pneumoniae (4KPE). Further, the compounds 7a-i have revealed acceptable ranges for drug-likeliness properties upon evaluation using SwissADME for ADMET and physiochemical properties.


Assuntos
Acetamidas , Antineoplásicos , Desenho de Fármacos , Ensaios de Seleção de Medicamentos Antitumorais , Indolizinas , Testes de Sensibilidade Microbiana , Simulação de Acoplamento Molecular , Humanos , Acetamidas/química , Acetamidas/farmacologia , Acetamidas/síntese química , Antibacterianos/farmacologia , Antibacterianos/síntese química , Antibacterianos/química , Antineoplásicos/farmacologia , Antineoplásicos/síntese química , Antineoplásicos/química , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Relação Dose-Resposta a Droga , Indolizinas/química , Indolizinas/farmacologia , Indolizinas/síntese química , Estrutura Molecular , Relação Estrutura-Atividade , Indóis/síntese química , Indóis/química , Indóis/farmacologia
3.
Amino Acids ; 55(2): 287-298, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36562834

RESUMO

Silkworms have limited ability to regulate their body temperature; therefore, environmental changes, such as global warming, can adversely affect their viability. Polyamines have shown protection to various organisms against heat stress. This study evaluated the qualitative and quantitative changes in heat-stressed Bombyx mori larvae polyamines. Fifth instar Bombyx mori larvae were divided into two groups; control group, reared at room temperature, i.e., 28 ± 2 °C, and the heat shock group, exposed to 40 °C. Dansylation of the whole worm polyamines and subsequent thin-layer chromatography revealed the presence of components with the same Rf value as dansyl-putrescine, spermidine, and spermine. The dansyl-putrescine, spermidine, and spermine polyamines were identified by mass spectrometric analyses. After heat shock, the thin-layer chromatography of the whole-larvae tissue extracts showed qualitative and quantitative changes in dansylated polyamines. A new polyamine, caldopentamine, was identified, which showed elevated levels in heat-stressed larvae. This polyamine could play a role in helping the larvae tolerate various stress, including thermal stress. No significant changes in silk fiber's economic and mechanical properties were observed in our study. This study indicated that PA, caldopentamine, supplementation could improve heat-stress tolerance in Bombyx mori.


Assuntos
Bombyx , Animais , Espermidina , Putrescina , Espermina , Poliaminas/análise
4.
Mol Divers ; 2023 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-37938509

RESUMO

1,2,3-Triazole and tetrazole derivatives bearing pyrrolidines are found to exhibit notable biological activity and have become useful scaffolds in medicinal chemistry for application in lead discovery and optimization. We report design, synthesis and molecular docking studies of tetrazolyl-1,2,3-triazole derivatives (7a-i) bearing pyrrolidine moiety and evaluating their anticancer activity against four cancer cell lines viz. Hela, MCF-7, HCT-116 and HepG2. The structures of the new compounds were ascertained by spectral means IR, NMR: 1H &13C and Mass spectrum. From the studies compounds7a and 7i exhibited significant anticancer activity against the Hela cell line with IC50 = 0.32 ± 1.00, 1.80 ± 0.22 µM when compared to reference drug Doxorubicin (IC50 = 2.34 ± 0.11 µM), whereas 7h, 7i, and 7b were found to be active against MCF-7, HCT-116 and HepG2 cell lines with IC50 = 3.20 ± 1.40, 1.38 ± 0.06 and 0.97 ± 0.12 µM respectively. Notably 7a exhibited highest conventional hydrogen bondings TyrA:40, SerA:17, LysA:117, AlaA:146, Tyr218 with 3HB4and SerA:17, LysA:117, AlaA:146, TyrA:40 with 6IBZ and docking energy - 10.85, - 8.21 kcal/mol respectively. These compounds were further evaluated for their ADMET and physicochemical properties by using SwissADME. The results of the in vitro and in silico studies suggest that the tetrazole incorporated pyrrolidine-triazoles may possess the ideal structural requirements for further developing new anticancer agents.

5.
Chaos ; 33(12)2023 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-38079647

RESUMO

In the past few decades, the use of fossil fuels has increased dramatically due to industrialization in developing nations. The elevation of carbon dioxide (CO2) has become a serious concern for the entire world. Therefore, most countries want to reduce the use of fossil fuels by transitioning to renewable energy sources. In this research work, we formulate a nonlinear mathematical model to study the interplay between atmospheric CO2, human population, and energy production through traditional energy sources (coal, oil, and gas) and renewable energy sources (solar, wind, and hydro). For the model formulation, we consider that the atmospheric level of CO2 increases due to human activities and energy production through traditional energy sources. Additionally, we consider that the dependency of the human population shifts from traditional to renewable sources of energy as the atmospheric level of CO2 increases. Through the model analysis, we have obtained a condition that implies a change in the equilibrium level of CO2 by increasing the deployment rate of renewable energy sources. This condition demonstrates that the atmospheric level of CO2 can be reversed from its current level through sufficient deployment of renewable energy sources. Moreover, for a certain critical value of the growth rate parameter of renewable energy, three interior equilibria may exist. This situation indicates the presence of hysteresis, which implies that the system may undergo discontinuous jumps between different stable steady states. Furthermore, we discuss an optimal control problem to minimize atmospheric CO2, simultaneously minimizing the cost of the considered strategy.

6.
J Hum Genet ; 67(5): 307-310, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-35017681

RESUMO

Many complex disease risk loci map to intergenic regions containing long intergenic noncoding RNAs (lincRNAs). The majority of these is not conserved outside humans, raising the question whether genetically regulated expression of non-conserved and conserved lincRNAs has similar rates of association with complex traits. Here we leveraged data from the Genotype-Tissue Expression (GTEx) project and multiple public genome-wide association study (GWAS) resources. Using an established transcriptome-wide association study (TWAS) tool, FUSION, we interrogated the associations between cis-regulated expression of lincRNAs and multiple cardiometabolic traits. We found that cis-regulated expression of non-conserved lincRNAs had a strikingly similar trend of association with complex cardiometabolic traits as conserved lincRNAs. This finding challenges the conventional notion of conservation that has led to prioritization of conserved loci for functional studies and calls attention to the need to develop comprehensive strategies to study the large number of non-conserved human lincRNAs that may contribute to human disease.


Assuntos
Doenças Cardiovasculares , RNA Longo não Codificante , Estudo de Associação Genômica Ampla , Humanos , Herança Multifatorial , RNA Longo não Codificante/genética , RNA Longo não Codificante/metabolismo , Transcriptoma
7.
Am J Perinatol ; 2022 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-36241210

RESUMO

OBJECTIVE: The determinants of preterm birth remain unknown. Excessive maternal inflammation during pregnancy may play an important role in the pathogenesis of preterm birth. Our objective was to describe the association of prenatal levels of proinflammatory C-reactive protein (CRP) and interleukin-8 (IL-8) with preterm birth in participants of the Vitamin D Antenatal Asthma Reduction Trial. STUDY DESIGN: Five hundred and twenty-eight patients with available samples of both first- and third-trimester plasma were included in this analysis. CRP and IL-8 were measured from maternal prenatal samples. We examined the association between prenatal CRP and IL-8 with maternal health characteristics and the outcome of preterm birth. We also described the patterns of change in CRP and IL-8 from first to third trimester and their association with preterm birth. A subgroup analysis comparing only those with a spontaneous preterm birth phenotype to those with term birth was also performed. RESULTS: Maternal characteristics including lower educational attainment, higher prepregnancy body mass index, gestational diabetes, lower vitamin D, and an unhealthy diet were associated with elevated levels of prenatal CRP and IL-8. Higher third trimester CRP and an increase in CRP from first to third trimester were associated with an increased odds of preterm birth when compared to lower levels of CRP (adjusted odds ratio [aOR] = 1.49, 95% confidence interval: 1.02, 2.23, p = 0.04) or a decrease in CRP over pregnancy (aOR = 3.06, 95% CI = 1.31,7.55, p = 0.01), after adjusting for potential confounders. These associations were strengthened when comparing only patients with spontaneous preterm birth (n = 22) to those with term births. CONCLUSION: Higher levels of the proinflammatory markers CRP and IL-8 are associated with indicators of poor maternal health and preterm birth. Prenatal CRP levels may reflect maternal prenatal health status and serve as a predictor of preterm birth, especially among those with spontaneous preterm birth. KEY POINTS: · Elevated prenatal CRP is associated with poor maternal health.. · High prenatal CRP may predict premature birth, especially spontaneous premature birth phenotypes.. · Vitamin D insufficiency may be a modifiable risk factor for prenatal inflammation..

8.
Biomacromolecules ; 20(3): 1254-1262, 2019 03 11.
Artigo em Inglês | MEDLINE | ID: mdl-30753058

RESUMO

The ordered supramolecular assemblies of short peptides have been recently gaining momentum due to their widespread applications in biology and materials sciences. In contrast to the α-peptides, limited success has been achieved from the backbone modified peptides. The proteolytic stability and conformational flexibility of the backbone modified peptides composed of ß-, γ-, and δ-amino acids can be explored to design ordered supramolecular gels and self-assembled materials. In this article, we are reporting the divergent supramolecular gels from a new class of short hybrid dipeptides composed of conformationally flexible new ß(O)-δ5-amino acids. The hybrid dipeptide composed of ß3- and ß(O)-δ5-Phe showed the formation of transparent gels from the aromatic solvents, while the dipeptide composed of ß(O)-δ5-Phe showed the thixotropic gel in phosphate buffered saline (PBS). In contrast, no organic or hydrogels were observed from the dipeptides composed of alternating α- and ß(O)-δ5-Phe as well as γ4 and ß(O)-δ5-Phe. The organogelation property displayed by the ß3,ß(O)-δ5-Phe dipeptide was further explored to recover the oil spills from the oil-water mixture. The thixotropic hydrogels displayed by the ß(O)-δ5, ß(O)-δ5-Phe dipeptide was further utilized as matrix along with cell culture medium to grow the cells in 2D-cell culture. Replacing the backbone -CH2- with "O" in the δ-Phe leads to the drastic change in the supramolecular behavior of δ-peptides. Overall, the short dipeptides from different backbone modified amino acids showed the divergent gelation properties and these properties can be further explored to design new functional biomaterials.


Assuntos
Hidrogéis/química , Peptídeos/química , Conformação Molecular , Proteólise
9.
Langmuir ; 34(4): 1591-1600, 2018 01 30.
Artigo em Inglês | MEDLINE | ID: mdl-29284085

RESUMO

Designing peptide-based drugs to target the ß-sheet-rich toxic intermediates during the aggregation of amyloid-ß 1-42 (Aß1-42) has been a major challenge. In general, ß-sheet breaker peptides (BSBPs) are designed to complement the enthalpic interactions with the aggregating protein, and entropic effects are usually ignored. Here, we have developed a conformationally constrained cyclic BSBP by the use of an unnatural amino acid and a disulfide bond. We show that our peptide strongly inhibits the aggregation of Aß1-42 in a concentration-dependent manner. It stabilizes the random coil conformation of Aß1-42 monomers and inhibits the secondary structural transition to a ß-sheet-rich conformation which allows Aß1-42 to oligomerize in an ordered assembly during its aggregation. Our cyclic peptide also rescues the toxicity of soluble aggregates of Aß1-42 toward neuronal cells. However, it significantly loses its potency in the conformationally relaxed acyclic form. It appears that limiting the loss of conformational entropy of the BSBP ligand can play a very important role in the attainment of conformations for precise and tight binding, making them a potent inhibitor for Aß1-42 amyloidosis.


Assuntos
Peptídeos beta-Amiloides/química , Peptídeos Cíclicos/química , Peptídeos/farmacologia , Fragmentos de Peptídeos/química , Peptídeos/química , Conformação Proteica , Multimerização Proteica/efeitos dos fármacos , Estrutura Secundária de Proteína , Termodinâmica
10.
Mol Divers ; 22(4): 827-840, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-29948580

RESUMO

A series of novel analogues based on a diazole-imide pharmacophore were synthesized by diazotizing substituted 1,3,4-thia-/oxadiazol-2-amines and subsequently coupling the resulting diazonium salts with N-substituted cyclic imides. The resulting compounds C1 to C28 were characterized by various spectral methods, viz. IR, NMR and mass spectroscopy. All the synthesized compounds were tested against two human cancer cell lines: human breast adenocarcinoma cell line MCF-7 and colorectal adenocarcinoma cell line HT-29. Among the synthesized compounds, C14 (2-(4-chloro-3-((5-(4-nitrophenyl)-1,3,4-thiadiazol-2-yl)diazenyl)phenyl)-4,5,6,7-tetrahydro-1H-isoindole-1,3(2H)-dione) emerged as a potential candidate against both MCF-7 and HT-29 with [Formula: see text] values of 0.09 ± 0.02 [Formula: see text]M and 0.11 ± 0.03 [Formula: see text]M, respectively. Similarly, compound C16 displayed highest anticancer activity against MCF-7 cell line with [Formula: see text] = 0.07 ± 0.02 [Formula: see text]M. Target fishing (inverse docking) using ChemMapper server identified EGFR tyrosine and CDK2 kinases as high priority targets for this pharmacophore. Computational docking (AutoDock 4.2) was used to analyse the interactions between the target proteins and active compounds.


Assuntos
Compostos Azo/química , Imidas/química , Simulação de Acoplamento Molecular , Oxidiazóis/síntese química , Oxidiazóis/farmacologia , Tiazóis/química , Antineoplásicos/síntese química , Antineoplásicos/química , Antineoplásicos/metabolismo , Antineoplásicos/farmacologia , Proliferação de Células/efeitos dos fármacos , Técnicas de Química Sintética , Humanos , Células MCF-7 , Oxidiazóis/química , Oxidiazóis/metabolismo , Conformação Proteica , Relação Estrutura-Atividade
11.
Biopolymers ; 107(1): 20-27, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27593708

RESUMO

Silkworm, Bombyx mori (B. mori) belongs to the Lepidoptera family. The silk produced from this insect, mulberry silk, gained lot of importance as a fabric. Silk is being exploited as a biomaterial due to its surprising strength and biocompatibility. Polyamines (PA) are important cell growth regulators. In the present work the effect of treatment of polyamines, putrescine (Put), spermidine (Spd), and spermine (Spm) on the quantity and quality of silk produced was assessed. Results showed that exogenous feeding of Spd at a concentration of 50 µM increased fiber length significantly. Analysis by Fourier transform infrared (FTIR) on the properties of silk obtained from Spd treated silkworms revealed an increase in percentage of absorption with no difference in peak positions of amide I and amide III groups. Scanning electron microscopy (SEM) revealed an increase in diameter of silk. Further, analysis at molecular level showed an increase in fibroin expression in Spd treated silk glands. However, the Spd treatment showed no significant difference with respect to fibroin to sericin ratio per unit weight of cocoon, silk tenacity, and percent elongation. Thus, the present results show that polyamine treatment would influence silk quality at structural, mechanical, and molecular level in the Bombyx mori, which can be exploited in silk biomaterial production.


Assuntos
Bombyx/metabolismo , Poliaminas/química , Seda/química , Animais , Microscopia Eletrônica de Varredura , Poliaminas/metabolismo , Seda/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier , Difração de Raios X
13.
JNMA J Nepal Med Assoc ; 61(257): 95-97, 2023 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-37203914

RESUMO

Lesbian, gay, bisexual, transgender, queer, and intersex are at increased risk of getting infected with sexually transmitted infections, suicidal behaviours, and substance and physical abuse. Stigmatization and discriminatory attitudes toward the community have led to disparities while receiving healthcare. In this article, we discuss the condition of healthcare in sexual minorities in Nepal, the major barriers to accessing healthcare facilities, the roles played by nongovernmental organizations, and the possible ways to improve healthcare in the lesbian, gay, bisexual, transgender, queer, and intersex community. Keywords: healthcare; LGBTQ persons; sexual minorities.


Assuntos
Atenção à Saúde , Minorias Sexuais e de Gênero , Feminino , Humanos , Nepal/epidemiologia , Comportamento Sexual
14.
Urol Clin North Am ; 50(1): 1-17, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36424074

RESUMO

A noninvasive test that can longitudinally assess renal parenchymal status would be incredibly valuable for a wide range of conditions, including neurogenic bladder, renal transplantation, and upper and lower urinary tract anomalies. To address this need, enormous amounts of time, effort, and resources have been invested to identify biologic molecules that signal the pathologic processes of renal parenchymal defects. In this comprehensive narrative review, the authors summarize biomarkers that have previously been investigated while highlighting the key pitfalls and barriers that have impeded biomarker discovery and translation.


Assuntos
Pesquisa Biomédica , Urologia , Criança , Humanos , Cicatriz/diagnóstico , Biomarcadores , Rim
15.
Am J Reprod Immunol ; 90(2): e13746, 2023 08.
Artigo em Inglês | MEDLINE | ID: mdl-37491932

RESUMO

PROBLEM: Promotion of a healthy pregnancy is dependent on a coordinated immune response that minimizes inflammation at the maternal-fetal interface. Few studies investigated the effect of fetal sex on proinflammatory biomarkers during pregnancy and whether maternal race could impact this association. We aimed to examine whether fetal sex could, independently of maternal race/ethnicity and the condition of pregnancy (normal vs. complicated), impact inflammatory markers (C-reactive protein [CRP] and interleukin-8 [IL-8] levels) in early and late pregnancy. METHODS OF STUDY: This study was a cohort analysis using prospectively collected data from pregnant women who participated in the Vitamin Antenatal Asthma Reduction Trial (VDAART, N = 816). Maternal serum CRP and IL-8 levels were measured in early and late pregnancy (10-18 and 32-38 weeks of gestation, respectively). Five hundred and twenty-eight out of 816 pregnant women who participated in the trial had available CRP and IL-8 measurements at both study time points. We examined the association of fetal sex with early and late CRP and IL-8 levels and their paired sample difference. We further investigated whether maternal race/ethnicity, pregnancy complications (i.e., preeclampsia and gestational diabetes), and early pregnancy body mass index (BMI) could affect the association between these two biomarkers and fetal sex adjusting for potential confounders. For this purpose, we used generalized linear and logistic regression models on log-normalized early and late CRP and IL-8 levels as well as their split at median to form high and low groups. RESULTS: Women pregnant with male fetuses (266/528 = 56.5%) had higher CRP levels in early to mid-pregnancy (ß = .18: 95% confidence interval [CI]: CI = 0.03-0.32; p = .02). Twenty-seven percent (143/528) of the study subjects were Hispanic. Hispanic African American [AA] women and women of races other than White and AA had higher levels of CRP at early to mid-pregnancy compared with White women (ß = .57; 95% CI: 0.17-0.97; p < .01 and ß = .27; 95% CI: 0.05-0.48; p = .02, respectively). IL-8 levels were not associated with fetal sex in early and late pregnancy (p's > .05). Other factors such as gestational diabetes and early pregnancy BMI were associated with higher CRP levels and higher CRP and IL-8 levels, respectively. Dichotomizing log-normalized cytokine levels at the median in a sensitivity analysis, women with male fetuses had lower odds of high (above-median) IL-8 levels at early pregnancy. Also, women with races other than AA and White carrying male fetuses had higher odds of having high (above-median) late-pregnancy CRP and early-pregnancy IL-8 levels (adjusted odds ratio [aOR] = 3.80, 95% CI: 0.24-1.23; p = .02 and aOR = 3.57; 95% CI: 0.23-1.03; p = .02, respectively). Of the pregnancy complications, women with gestational diabetes mellitus had a higher paired difference of early and late pregnancy CRP levels (ß = .38; 95% CI: 0.09-0.68; p = .01), but no difference in IL-8 levels (p's > .05). No associations between the inflammatory markers and preeclampsia were found. CONCLUSION: Fetal sex is associated with CRP in early pregnancy and an association with IL-8 in early pregnancy is implied. Our study further indicates that maternal race/ethnicity could be a contributing factor in the relationship between fetal sex and inflammatory responses during pregnancy. However, the specificity and level of the contribution might vary by type of cytokine, pregnancy stage, and other confounding factors such as BMI that may impact these associations.


Assuntos
Diabetes Gestacional , Pré-Eclâmpsia , Complicações na Gravidez , Gravidez , Feminino , Masculino , Humanos , Proteína C-Reativa/análise , Etnicidade , Interleucina-8 , Citocinas , Biomarcadores
16.
Biophys J ; 103(4): 797-806, 2012 Aug 22.
Artigo em Inglês | MEDLINE | ID: mdl-22947941

RESUMO

An important goal in studies of protein aggregation is to obtain an understanding of the structural diversity that is characteristic of amyloid fibril and protofibril structures at the molecular level. In this study, what to our knowledge are novel assays based on time-resolved fluorescence anisotropy decay and dynamic quenching measurements of a fluorophore placed at different specific locations in the primary structure of a small protein, barstar, have been used to determine the extent to which the protein sequence participates in the structural core of protofibrils. The fluorescence measurements reveal the structural basis of how modulating solvent polarity results in the tuning of the protofibril conformation from a pair of parallel ß-sheets in heat-induced protofibrils to a single parallel ß-sheet in trifluorethanol-induced protofibrils. In trifluorethanol-induced protofibrils, the single ß-sheet is shown to be built up from in-register ß-strands formed by nearly the entire protein sequence, while in heat-induced protofibrils, the pair of ß-sheets motif is built up from ß-strands formed by only the last two-third of the protein sequence.


Assuntos
Amiloide/química , Proteínas de Bactérias/química , Multimerização Proteica/efeitos dos fármacos , Solventes/farmacologia , Polarização de Fluorescência , Temperatura Alta , Ligação de Hidrogênio , Modelos Moleculares , Peso Molecular , Estabilidade Proteica/efeitos dos fármacos , Estrutura Secundária de Proteína/efeitos dos fármacos , Trifluoretanol/farmacologia
17.
J Biomol Struct Dyn ; 40(7): 3110-3128, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-33200681

RESUMO

SARS-COV-2, the novel coronavirus and root of global pandemic COVID-19 caused a severe health threat throughout the world. Lack of specific treatments raised an effort to find potential inhibitors for the viral proteins. The recently invented crystal structure of SARS-CoV-2 main protease (Mpro) and its key role in viral replication; non-resemblance to any human protease makes it a perfect target for inhibitor research. This article reports a computer-aided drug design (CADD) approach for the screening of 118 compounds with 16 distinct heterocyclic moieties in comparison with 5 natural products and 7 repurposed drugs. Molecular docking analysis against Mpro protein were performed finding isatin linked with a oxidiazoles (A2 and A4) derivatives to have the best docking scores of -11.22 kcal/mol and -11.15 kcal/mol respectively. Structure-activity relationship studies showed a good comparison with a known active Mpro inhibitor and repurposed drug ebselen with an IC50 value of -0.67 µM. Molecular Dynamics (MD) simulations for 50 ns were performed for A2 and A4 supporting the stability of the two compounds within the binding pocket, largely at the S1, S2 and S4 domains with high binding energy suggesting their suitability as potential inhibitors of Mpro for SARS-CoV-2.


Assuntos
Tratamento Farmacológico da COVID-19 , Isatina , Antivirais/química , Antivirais/farmacologia , Proteases 3C de Coronavírus , Humanos , Isatina/farmacologia , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Inibidores de Proteases/química , Inibidores de Proteases/farmacologia , SARS-CoV-2 , Relação Estrutura-Atividade
18.
J Allergy Clin Immunol Pract ; 10(12): 3213-3219.e11, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36108928

RESUMO

BACKGROUND: The pathogenesis of childhood asthma is complex, and determinants of risk may begin in utero. OBJECTIVE: To describe the association of systemic prenatal inflammation, measured by plasma C-reactive protein (CRP), with childhood asthma, eczema, and allergic rhinitis. METHODS: A total of 522 maternal-offspring pairs from the Vitamin D Antenatal Asthma Reduction Trial were included. Prenatal plasma CRP level was measured between 10 and 18 weeks of gestation and between 32 and 38 weeks of gestation. Offspring asthma, eczema, and allergic rhinitis were assessed quarterly between birth and age 6 years. We performed mediation analyses of prenatal CRP on the association between several maternal characteristics and offspring asthma. RESULTS: Elevated early and late prenatal CRP and an increase in CRP from early to late pregnancy were associated with asthma by age 6 years (early: adjusted odds ratio [aOR], 1.76, 95% CI, 1.12-2.82, P = .02; late: aOR, 2.45, 95% CI, 1.47-4.18, P < .001; CRP increase: aOR, 2.06, 95% CI, 1.26-3.39, P < .004). Prenatal CRP and childhood asthma associations were strengthened among offspring with atopic asthma (early: aOR, 3.78, 95% CI, 1.49-10.64, P = .008; late: aOR, 4.84, 95% CI, 1.68-15.50, P = .005; CRP increase: aOR, 3.01, 95% CI, 1.06-9.16, P = .04). Early and late prenatal CRP mediated 96% and 86% of the association between maternal prepregnancy body mass index and offspring asthma, respectively. CONCLUSIONS: Higher prenatal CRP and an increase in CRP from early to late pregnancy are associated with childhood asthma. Systemic inflammation during pregnancy associated with modifiable maternal characteristics may be an important determinant of childhood asthma risk.


Assuntos
Asma , Eczema , Hipersensibilidade Imediata , Efeitos Tardios da Exposição Pré-Natal , Rinite Alérgica , Criança , Feminino , Humanos , Gravidez , Asma/complicações , Proteína C-Reativa/metabolismo , Eczema/etiologia , Hipersensibilidade Imediata/etiologia , Inflamação , Efeitos Tardios da Exposição Pré-Natal/epidemiologia , Rinite Alérgica/complicações , Vitaminas
19.
Biochemistry ; 50(3): 397-408, 2011 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-21141874

RESUMO

Protein function is intimately related to the dynamics of the protein as well as to the dynamics of the solvent shell around the protein. Although it has been argued extensively that protein dynamics is slaved to solvent dynamics, experimental support for this hypothesis is scanty. In this study, measurements of fluorescence anisotropy decay kinetics have been used to determine the motional dynamics of the fluorophore acrylodan linked to several locations in a small protein barstar in its various structural forms, including the native and unfolded states as well as the acid and protofibril forms. Fluorescence upconversion and streak camera measurements have been used to determine the solvation dynamics around the fluorophore. Both the motional dynamics and solvent dynamics were found to be dependent upon the location of the probe as well as on the structural form of the protein. While the (internal) motional dynamics of the fluorophore occur in the 0.1-3 ns time domain, the observed mean solvent relaxation times are in the range of 20-300 ps. A strong positive correlation between these two dynamical modes was found in spite of the significant difference in their time scales. This observed correlation is a strong indicator of the coupling between solvent dynamics and the dynamics in the protein.


Assuntos
Proteínas de Bactérias/química , Água/química , 2-Naftilamina/análogos & derivados , 2-Naftilamina/química , Polarização de Fluorescência , Conformação Proteica , Solubilidade
20.
Med Chem ; 17(1): 60-70, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-32370721

RESUMO

BACKGROUND: Life style and jobs in current situations have generated increased free radicals such as hydroxyl (OH•) and superoxide (O2•) radicals, thereby increasing stress in humans. Interest in search of antioxidants that trap these free radicals has increased to relieve stress. ß-carotene (provitamin A), ascorbic acid (vitamin C), tocopherol or vitamin E, Trolox; butyl hydroxy toluene and phenolic compounds are the well-known antioxidants. Several methods evaluate the antioxidant property existing in natural substances (medicinal plants and agri-food products) and synthetic compounds (2-methyl-3- (pyrrolidin-2-ylideneamino) quinazolin-4 (3H) -one and 3,3'- (1,4- phenylenebis (methanylylidene)) bis (azanylylidene) (2-methyl-quinazolin-4 (3H) -one). OBJECTIVE: The objective of this study is to focus on complexes with p-hydroxycinnamic acids to trap free radicals in a greener way. METHODS: Spectroscopic shifts and structural studies were employed to attribute electronic properties responsible for antioxidant profile. Spectroscopic shifts in wavenumbers were attributed with Fourier Transform Infrared Spectra (FTIR) and Fourier Transform Raman spectra (FT Raman Spectra). Structural studies were performed with Gaussian package, electron density method the B3LYP method, basis set 6-31(d) for attributing electronic properties responsible for antioxidant profile. RESULTS: Interpretation of FTIR spectra revealed spectroscopic shifts in wavenumbers in all the complexes responsible for bonding. Further, studies confirmed the formation of complex with reduced intensities in Raman spectra. Computational studies revealed enhancement in molecular and electronic properties responsible for antioxidant power. CONCLUSION: Studies revealed that complex with p-nitroaniline contribute to greater acceptor and donor power responsible for antioxidant power. These higher powers suggest the best antiradicals to trap free radicals.


Assuntos
Compostos de Anilina/química , Antioxidantes/química , Ácidos Cumáricos/química , Teoria da Densidade Funcional , Modelos Moleculares , Conformação Molecular , Espectroscopia de Infravermelho com Transformada de Fourier , Análise Espectral Raman
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