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Nucleic Acids Res ; 45(D1): D457-D465, 2017 01 04.
Artigo em Inglês | MEDLINE | ID: mdl-27799466

RESUMO

Viruses represent the most abundant life forms on the planet. Recent experimental and computational improvements have led to a dramatic increase in the number of viral genome sequences identified primarily from metagenomic samples. As a result of the expanding catalog of metagenomic viral sequences, there exists a need for a comprehensive computational platform integrating all these sequences with associated metadata and analytical tools. Here we present IMG/VR (https://img.jgi.doe.gov/vr/), the largest publicly available database of 3908 isolate reference DNA viruses with 264 413 computationally identified viral contigs from >6000 ecologically diverse metagenomic samples. Approximately half of the viral contigs are grouped into genetically distinct quasi-species clusters. Microbial hosts are predicted for 20 000 viral sequences, revealing nine microbial phyla previously unreported to be infected by viruses. Viral sequences can be queried using a variety of associated metadata, including habitat type and geographic location of the samples, or taxonomic classification according to hallmark viral genes. IMG/VR has a user-friendly interface that allows users to interrogate all integrated data and interact by comparing with external sequences, thus serving as an essential resource in the viral genomics community.


Assuntos
Vírus de DNA/genética , Bases de Dados Genéticas , Genoma Viral , Genômica/métodos , Metagenômica/métodos , Retroviridae/genética , Software , Microbiologia Ambiental , Interações Hospedeiro-Patógeno , Metagenoma , Análise de Sequência de DNA
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