Pesquisa | BVS Aleitamento Materno

1.

Massively parallel base editing to map variant effects in human hematopoiesis.

Martin-Rufino, Jorge D; Castano, Nicole; Pang, Michael; Grody, Emanuelle I; Joubran, Samantha; Caulier, Alexis; Wahlster, Lara; Li, Tongqing; Qiu, Xiaojie; Riera-Escandell, Anna Maria; Newby, Gregory A; Al'Khafaji, Aziz; Chaudhary, Santosh; Black, Susan; Weng, Chen; Munson, Glen; Liu, David R; Wlodarski, Marcin W; Sims, Kacie; Oakley, Jamie H; Fasano, Ross M; Xavier, Ramnik J; Lander, Eric S; Klein, Daryl E; Sankaran, Vijay G.

Cell; 186(11): 2456-2474.e24, 2023 05 25.

Artigo em Inglês | MEDLINE | ID: mdl-37137305

2.

Mapping transcriptomic vector fields of single cells.

Qiu, Xiaojie; Zhang, Yan; Martin-Rufino, Jorge D; Weng, Chen; Hosseinzadeh, Shayan; Yang, Dian; Pogson, Angela N; Hein, Marco Y; Hoi Joseph Min, Kyung; Wang, Li; Grody, Emanuelle I; Shurtleff, Matthew J; Yuan, Ruoshi; Xu, Song; Ma, Yian; Replogle, Joseph M; Lander, Eric S; Darmanis, Spyros; Bahar, Ivet; Sankaran, Vijay G; Xing, Jianhua; Weissman, Jonathan S.

Cell; 185(4): 690-711.e45, 2022 02 17.

Artigo em Inglês | MEDLINE | ID: mdl-35108499

3.

Polygenic Prediction of Weight and Obesity Trajectories from Birth to Adulthood.

Khera, Amit V; Chaffin, Mark; Wade, Kaitlin H; Zahid, Sohail; Brancale, Joseph; Xia, Rui; Distefano, Marina; Senol-Cosar, Ozlem; Haas, Mary E; Bick, Alexander; Aragam, Krishna G; Lander, Eric S; Smith, George Davey; Mason-Suares, Heather; Fornage, Myriam; Lebo, Matthew; Timpson, Nicholas J; Kaplan, Lee M; Kathiresan, Sekar.

Cell; 177(3): 587-596.e9, 2019 04 18.

Artigo em Inglês | MEDLINE | ID: mdl-31002795

4.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger, Geoffrey; Shu, Jian; Tabaka, Marcin; Cleary, Brian; Subramanian, Vidya; Solomon, Aryeh; Gould, Joshua; Liu, Siyan; Lin, Stacie; Berube, Peter; Lee, Lia; Chen, Jenny; Brumbaugh, Justin; Rigollet, Philippe; Hochedlinger, Konrad; Jaenisch, Rudolf; Regev, Aviv; Lander, Eric S.

Cell; 176(4): 928-943.e22, 2019 02 07.

Artigo em Inglês | MEDLINE | ID: mdl-30712874

5.

Small Molecule Targets TMED9 and Promotes Lysosomal Degradation to Reverse Proteinopathy.

Dvela-Levitt, Moran; Kost-Alimova, Maria; Emani, Maheswarareddy; Kohnert, Eva; Thompson, Rebecca; Sidhom, Eriene-Heidi; Rivadeneira, Ana; Sahakian, Nareh; Roignot, Julie; Papagregoriou, Gregory; Montesinos, Monica S; Clark, Abbe R; McKinney, David; Gutierrez, Juan; Roth, Mark; Ronco, Lucienne; Elonga, Esther; Carter, Todd A; Gnirke, Andreas; Melanson, Michelle; Hartland, Kate; Wieder, Nicolas; Hsu, Jane C-H; Deltas, Constantinos; Hughey, Rebecca; Bleyer, Anthony J; Kmoch, Stanislav; Zivná, Martina; Baresova, Veronika; Kota, Savithri; Schlondorff, Johannes; Heiman, Myriam; Alper, Seth L; Wagner, Florence; Weins, Astrid; Golub, Todd R; Lander, Eric S; Greka, Anna.

Cell; 178(3): 521-535.e23, 2019 07 25.

Artigo em Inglês | MEDLINE | ID: mdl-31348885

6.

Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.

Khajuria, Rajiv K; Munschauer, Mathias; Ulirsch, Jacob C; Fiorini, Claudia; Ludwig, Leif S; McFarland, Sean K; Abdulhay, Nour J; Specht, Harrison; Keshishian, Hasmik; Mani, D R; Jovanovic, Marko; Ellis, Steven R; Fulco, Charles P; Engreitz, Jesse M; Schütz, Sabina; Lian, John; Gripp, Karen W; Weinberg, Olga K; Pinkus, Geraldine S; Gehrke, Lee; Regev, Aviv; Lander, Eric S; Gazda, Hanna T; Lee, Winston Y; Panse, Vikram G; Carr, Steven A; Sankaran, Vijay G.

Cell; 173(1): 90-103.e19, 2018 03 22.

Artigo em Inglês | MEDLINE | ID: mdl-29551269

7.

Efficient Generation of Transcriptomic Profiles by Random Composite Measurements.

Cleary, Brian; Cong, Le; Cheung, Anthea; Lander, Eric S; Regev, Aviv.

Cell; 171(6): 1424-1436.e18, 2017 Nov 30.

Artigo em Inglês | MEDLINE | ID: mdl-29153835

8.

Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras.

Wang, Tim; Yu, Haiyan; Hughes, Nicholas W; Liu, Bingxu; Kendirli, Arek; Klein, Klara; Chen, Walter W; Lander, Eric S; Sabatini, David M.

Cell; 168(5): 890-903.e15, 2017 02 23.

Artigo em Inglês | MEDLINE | ID: mdl-28162770

9.

Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation.

Kim, Ah Ram; Ulirsch, Jacob C; Wilmes, Stephan; Unal, Ekrem; Moraga, Ignacio; Karakukcu, Musa; Yuan, Daniel; Kazerounian, Shideh; Abdulhay, Nour J; King, David S; Gupta, Namrata; Gabriel, Stacey B; Lander, Eric S; Patiroglu, Turkan; Ozcan, Alper; Ozdemir, Mehmet Akif; Garcia, K Christopher; Piehler, Jacob; Gazda, Hanna T; Klein, Daryl E; Sankaran, Vijay G.

Cell; 168(6): 1053-1064.e15, 2017 03 09.

Artigo em Inglês | MEDLINE | ID: mdl-28283061

10.

Cohesin Loss Eliminates All Loop Domains.

Rao, Suhas S P; Huang, Su-Chen; Glenn St Hilaire, Brian; Engreitz, Jesse M; Perez, Elizabeth M; Kieffer-Kwon, Kyong-Rim; Sanborn, Adrian L; Johnstone, Sarah E; Bascom, Gavin D; Bochkov, Ivan D; Huang, Xingfan; Shamim, Muhammad S; Shin, Jaeweon; Turner, Douglass; Ye, Ziyi; Omer, Arina D; Robinson, James T; Schlick, Tamar; Bernstein, Bradley E; Casellas, Rafael; Lander, Eric S; Aiden, Erez Lieberman.

Cell; 171(2): 305-320.e24, 2017 Oct 05.

Artigo em Inglês | MEDLINE | ID: mdl-28985562

11.

Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms.

Rusu, Victor; Hoch, Eitan; Mercader, Josep M; Tenen, Danielle E; Gymrek, Melissa; Hartigan, Christina R; DeRan, Michael; von Grotthuss, Marcin; Fontanillas, Pierre; Spooner, Alexandra; Guzman, Gaelen; Deik, Amy A; Pierce, Kerry A; Dennis, Courtney; Clish, Clary B; Carr, Steven A; Wagner, Bridget K; Schenone, Monica; Ng, Maggie C Y; Chen, Brian H; Centeno-Cruz, Federico; Zerrweck, Carlos; Orozco, Lorena; Altshuler, David M; Schreiber, Stuart L; Florez, Jose C; Jacobs, Suzanne B R; Lander, Eric S.

Cell; 170(1): 199-212.e20, 2017 Jun 29.

Artigo em Inglês | MEDLINE | ID: mdl-28666119

12.

The Heroes of CRISPR.

Lander, Eric S.

Cell; 164(1-2): 18-28, 2016 Jan 14.

Artigo em Inglês | MEDLINE | ID: mdl-26771483

13.

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.

Tewhey, Ryan; Kotliar, Dylan; Park, Daniel S; Liu, Brandon; Winnicki, Sarah; Reilly, Steven K; Andersen, Kristian G; Mikkelsen, Tarjei S; Lander, Eric S; Schaffner, Stephen F; Sabeti, Pardis C.

Cell; 165(6): 1519-1529, 2016 Jun 02.

Artigo em Inglês | MEDLINE | ID: mdl-27259153

14.

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.

Dixit, Atray; Parnas, Oren; Li, Biyu; Chen, Jenny; Fulco, Charles P; Jerby-Arnon, Livnat; Marjanovic, Nemanja D; Dionne, Danielle; Burks, Tyler; Raychowdhury, Raktima; Adamson, Britt; Norman, Thomas M; Lander, Eric S; Weissman, Jonathan S; Friedman, Nir; Regev, Aviv.

Cell; 167(7): 1853-1866.e17, 2016 Dec 15.

Artigo em Inglês | MEDLINE | ID: mdl-27984732

15.

Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency.

Cacchiarelli, Davide; Trapnell, Cole; Ziller, Michael J; Soumillon, Magali; Cesana, Marcella; Karnik, Rahul; Donaghey, Julie; Smith, Zachary D; Ratanasirintrawoot, Sutheera; Zhang, Xiaolan; Ho Sui, Shannan J; Wu, Zhaoting; Akopian, Veronika; Gifford, Casey A; Doench, John; Rinn, John L; Daley, George Q; Meissner, Alexander; Lander, Eric S; Mikkelsen, Tarjei S.

Cell; 162(2): 412-424, 2015 Jul 16.

Artigo em Inglês | MEDLINE | ID: mdl-26186193

16.

Convergence of coronary artery disease genes onto endothelial cell programs.

Schnitzler, Gavin R; Kang, Helen; Fang, Shi; Angom, Ramcharan S; Lee-Kim, Vivian S; Ma, X Rosa; Zhou, Ronghao; Zeng, Tony; Guo, Katherine; Taylor, Martin S; Vellarikkal, Shamsudheen K; Barry, Aurelie E; Sias-Garcia, Oscar; Bloemendal, Alex; Munson, Glen; Guckelberger, Philine; Nguyen, Tung H; Bergman, Drew T; Hinshaw, Stephen; Cheng, Nathan; Cleary, Brian; Aragam, Krishna; Lander, Eric S; Finucane, Hilary K; Mukhopadhyay, Debabrata; Gupta, Rajat M; Engreitz, Jesse M.

Nature; 626(8000): 799-807, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-38326615

17.

Development and applications of CRISPR-Cas9 for genome engineering.

Hsu, Patrick D; Lander, Eric S; Zhang, Feng.

Cell; 157(6): 1262-1278, 2014 Jun 05.

Artigo em Inglês | MEDLINE | ID: mdl-24906146

18.

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites.

Engreitz, Jesse M; Sirokman, Klara; McDonel, Patrick; Shishkin, Alexander A; Surka, Christine; Russell, Pamela; Grossman, Sharon R; Chow, Amy Y; Guttman, Mitchell; Lander, Eric S.

Cell; 159(1): 188-199, 2014 Sep 25.

Artigo em Inglês | MEDLINE | ID: mdl-25259926

19.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger, Geoffrey; Shu, Jian; Tabaka, Marcin; Cleary, Brian; Subramanian, Vidya; Solomon, Aryeh; Gould, Joshua; Liu, Siyan; Lin, Stacie; Berube, Peter; Lee, Lia; Chen, Jenny; Brumbaugh, Justin; Rigollet, Philippe; Hochedlinger, Konrad; Jaenisch, Rudolf; Regev, Aviv; Lander, Eric S.

Cell; 176(6): 1517, 2019 Mar 07.

Artigo em Inglês | MEDLINE | ID: mdl-30849376

20.

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Schwartz, Schraga; Bernstein, Douglas A; Mumbach, Maxwell R; Jovanovic, Marko; Herbst, Rebecca H; León-Ricardo, Brian X; Engreitz, Jesse M; Guttman, Mitchell; Satija, Rahul; Lander, Eric S; Fink, Gerald; Regev, Aviv.

Cell; 159(1): 148-162, 2014 Sep 25.

Artigo em Inglês | MEDLINE | ID: mdl-25219674

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Massively parallel base editing to map variant effects in human hematopoiesis.

Mapping transcriptomic vector fields of single cells.

Polygenic Prediction of Weight and Obesity Trajectories from Birth to Adulthood.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Small Molecule Targets TMED9 and Promotes Lysosomal Degradation to Reverse Proteinopathy.

Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.

Efficient Generation of Transcriptomic Profiles by Random Composite Measurements.

Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras.

Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation.

Cohesin Loss Eliminates All Loop Domains.

Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms.

The Heroes of CRISPR.

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.

Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency.

Convergence of coronary artery disease genes onto endothelial cell programs.

Development and applications of CRISPR-Cas9 for genome engineering.

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.