Genomic divergence across ecological gradients in the Central African rainforest songbird (Andropadus virens).

The little greenbul, a common rainforest passerine from sub-Saharan Africa, has been the subject of long-term evolutionary studies to understand the mechanisms leading to rainforest speciation. Previous research found morphological and behavioural divergence across rainforest-savannah transition zones (ecotones), and a pattern of divergence with gene flow suggesting divergent natural selection has contributed to adaptive divergence and ecotones could be important areas for rainforests speciation. Recent advances in genomics and environmental modelling make it possible to examine patterns of genetic divergence in a more comprehensive fashion. To assess the extent to which natural selection may drive patterns of differentiation, here we investigate patterns of genomic differentiation among populations across environmental gradients and regions. We find compelling evidence that individuals form discrete genetic clusters corresponding to distinctive environmental characteristics and habitat types. Pairwise FST between populations in different habitats is significantly higher than within habitats, and this differentiation is greater than what is expected from geographic distance alone. Moreover, we identified 140 SNPs that showed extreme differentiation among populations through a genomewide selection scan. These outliers were significantly enriched in exonic and coding regions, suggesting their functional importance. Environmental association analysis of SNP variation indicates that several environmental variables, including temperature and elevation, play important roles in driving the pattern of genomic diversification. Results lend important new genomic evidence for environmental gradients being important in population differentiation.

Mapping migration in a songbird using high-resolution genetic markers.

Neotropic migratory birds are declining across the Western Hemisphere, but conservation efforts have been hampered by the inability to assess where migrants are most limited-the breeding grounds, migratory stopover sites or wintering areas. A major challenge has been the lack of an efficient, reliable and broadly applicable method for measuring the strength of migratory connections between populations across the annual cycle. Here, we show how high-resolution genetic markers can be used to identify genetically distinct groups of a migratory bird, the Wilson's warbler (Cardellina pusilla), at fine enough spatial scales to facilitate assessing regional drivers of demographic trends. By screening 1626 samples using 96 highly divergent single nucleotide polymorphisms selected from a large pool of candidates (~450 000), we identify novel region-specific migratory routes and timetables of migration along the Pacific Flyway. Our results illustrate that high-resolution genetic markers are more reliable, precise and amenable to high throughput screening than previously described intrinsic marking techniques, making them broadly applicable to large-scale monitoring and conservation of migratory organisms.

Variation in Tick Load Among Bird Body Parts: Implications for Studying the Role of Birds in the Ecology and Epidemiology of Tick-Borne Diseases.

Wild birds play important roles in the maintenance and dispersal of tick populations and tick-borne pathogens, yet in field studies of tick-borne disease ecology and epidemiology there is limited standardization of how birds are searched for ticks. We conducted a qualitative literature review of 100 field studies where birds were searched for ticks to characterize which parts of a bird's anatomy are typically sampled. To increase understanding of potential biases associated with different sampling approaches, we described variation in tick loads among bird body parts using field-collected data from 459 wild-caught birds that were searched across the entire body. The literature review illustrated a lack of clarity and consistency in tick-searching protocols: 57% of studies did not explicitly report whether entire birds or only particular body parts were searched, 34% reported concentrating searches on certain body parts (most frequently the head only), and only 9% explicitly reported searching the entire bird. Based on field-collected data, only 22% of ticks were found on the head, indicating that studies focusing on the head likely miss a large proportion of ticks. We provide tentative evidence that feeding locations may vary among tick species; 89% of Amblyomma americanum, 73% of Ambloyomma maculatum, and 56% of Haemaphysalis leporispalustris were on body parts other than the head. Our findings indicate a need for clear reporting and increased standardization of tick searching methodologies, including sampling the entire bird body, to provide an unbiased understanding of the role of birds in the maintenance and emergence of tick-borne pathogens.

Factors influencing bird-building collisions in the downtown area of a major North American city.

Bird-building collisions are the largest source of avian collision mortality in North America. Despite a growing literature on bird-building collisions, little research has been conducted in downtown areas of major cities, and no studies have included stadiums, which can be extremely large, often have extensive glass surfaces and lighting, and therefore may cause many bird collisions. Further, few studies have assessed the role of nighttime lighting in increasing collisions, despite the often-cited importance of this factor, or considered collision correlates for different seasons and bird species. We conducted bird collision monitoring over four migration seasons at 21 buildings, including a large multi-use stadium, in downtown Minneapolis, Minnesota, USA. We used a rigorous survey methodology to quantify among-building variation in collisions and assess how building features (e.g., glass area, lighting, vegetation) influence total collision fatalities, fatalities for separate seasons and species, and numbers of species colliding. Four buildings, including the stadium, caused a high proportion of all collisions and drove positive effects of glass area and amount of surrounding vegetation on most collision variables. Excluding these buildings from analyses resulted in slightly different collision predictors, suggesting that factors leading some buildings to cause high numbers of collisions are not the exact same factors causing variation among more typical buildings. We also found variation in collision correlates between spring and fall migration and among bird species, that factors influencing collision fatalities also influence numbers of species colliding, and that the proportion, and potentially area, of glass lighted at night are associated with collisions. Thus, reducing bird collisions at large buildings, including stadiums, should be achievable by reducing glass area (or treating existing glass), reducing light emission at night, and prioritizing mitigation efforts for glass surfaces near vegetated areas and/or avoiding use of vegetation near glass.