Detalhe da pesquisa
1.
Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis: A model based exploration of the PRDM9 intra-genomic Red Queen.
PLoS Genet;
20(5): e1011274, 2024 May.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38768268
2.
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
Proc Natl Acad Sci U S A;
120(11): e2214977120, 2023 03 14.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36897968
3.
Identifying the Best Approximating Model in Bayesian Phylogenetics: Bayes Factors, Cross-Validation or wAIC?
Syst Biol;
72(3): 616-638, 2023 06 17.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36810802
4.
Compositionally Constrained Sites Drive Long-Branch Attraction.
Syst Biol;
72(4): 767-780, 2023 08 07.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36946562
5.
An Improved Codon Modeling Approach for Accurate Estimation of the Mutation Bias.
Mol Biol Evol;
39(2)2022 02 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35021218
6.
Inferring Long-Term Effective Population Size with Mutation-Selection Models.
Mol Biol Evol;
38(10): 4573-4587, 2021 09 27.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34191010
7.
A Bayesian Mutation-Selection Framework for Detecting Site-Specific Adaptive Evolution in Protein-Coding Genes.
Mol Biol Evol;
38(3): 1199-1208, 2021 03 09.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33045094
8.
Scalable Empirical Mixture Models That Account for Across-Site Compositional Heterogeneity.
Mol Biol Evol;
37(12): 3616-3631, 2020 12 16.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32877529
9.
Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation-Selection Models.
Mol Biol Evol;
35(11): 2819-2834, 2018 11 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30203003
10.
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.
Mol Biol Evol;
35(12): 2900-2912, 2018 12 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30247705
11.
Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
Mol Biol Evol;
34(1): 204-214, 2017 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27744408
12.
Genomic data do not support comb jellies as the sister group to all other animals.
Proc Natl Acad Sci U S A;
112(50): 15402-7, 2015 Dec 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26621703
13.
Detecting consistent patterns of directional adaptation using differential selection codon models.
BMC Evol Biol;
17(1): 147, 2017 06 23.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28645318
14.
Erratum to: A Bayesian mutation-selection framework for detecting site-specific adaptive evolution in protein-coding genes.
Mol Biol Evol;
38(7): 3032, 2021 Jun 25.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34010420
15.
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
Syst Biol;
65(4): 726-36, 2016 07.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27235697
16.
The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes.
PLoS Genet;
10(11): e1004790, 2014 Nov.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25393762
17.
Erratum: Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods.
Mol Biol Evol;
36(3): 641, 2019 03 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30690454
18.
A phylogenetic Kalman filter for ancestral trait reconstruction using molecular data.
Bioinformatics;
30(4): 488-96, 2014 Feb 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-24318999
19.
Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package.
Bioinformatics;
30(7): 1020-1, 2014 Apr 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-24351710
20.
Monte Carlo algorithms for Brownian phylogenetic models.
Bioinformatics;
30(21): 3020-8, 2014 Nov 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25053744