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1.
Methods ; 144: 14-26, 2018 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-29702225

RESUMO

Interfacing liquid chromatography (LC) with electrospray ionization (ESI) to enable on-line MS detection had been initially implemented using reversed phase LC, which in the past three decades remained the default type of chromatography used for LC/MS and LC/MS/MS studies of protein structure. In contrast, the advantages of other types of LC as front-ends for ESI MS, particularly those that allow biopolymer higher order structure to be preserved throughout the separation process, enjoyed relatively little appreciation until recently. However, the past few years witnessed a dramatic surge of interest in the so-called "native" (with "non-denaturing" being perhaps a more appropriate adjective) LC/MS and LC/MS/MS analyses within the bioanalytical and biophysical communities. This review focuses on recent advances in this field, with an emphasis on size exclusion and ion exchange chromatography as front-end platforms for protein characterization by LC/MS. Also discussed are the benefits provided by the integration of chemical reactions in the native LC/MS analyses, including both ion chemistry in the gas phase (e.g., limited charge reduction for characterization of highly heterogeneous biopolymers) and solution-phase reactions (using the recently introduced technique cross-path reactive chromatography).


Assuntos
Cromatografia por Troca Iônica/métodos , Espectrometria de Massas/métodos , Conformação Proteica , Proteínas/metabolismo , Ligantes , Domínios e Motivos de Interação entre Proteínas , Mapas de Interação de Proteínas , Proteínas/química
2.
Phys Rev E ; 107(1-2): 015102, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-36797929

RESUMO

By (i) highlighting the mitigation effect of strain rates on laminar flame instabilities and (ii) comparing peak growth rates of laminar flame instabilities with strain rates generated by small-scale turbulent eddies, a simple criterion of importance of the influence of the instabilities on an increase in premixed flame surface area in turbulent flows is suggested. The criterion implies that, even in lean hydrogen-air mixtures, laminar flame instabilities can significantly affect the flame area only in weak or moderate turbulence (the Karlovitz number defined using laminar flame speed, thermal flame thickness, and Kolmogorov time scale is on the order of 10 or less under room conditions).

3.
Phys Rev E ; 108(3-2): 035101, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37849164

RESUMO

Reported in the paper are results of unsteady three-dimensional direct numerical simulations of laminar and turbulent, lean hydrogen-air, complex-chemistry flames propagating in forced turbulence in a box. To explore the eventual influence of thermodiffusive instability of laminar flames on turbulent burning velocity, (i) a critical length scale Λ_{n} that bounds regimes of unstable and stable laminar combustion is numerically determined by gradually decreasing the width Λ of computational domain until a stable laminar flame is obtained, and (ii) simulations of turbulent flames are performed by varying the width from Λ<Λ_{n} (in this case, the instability is suppressed) to Λ>Λ_{n} (in this case, the instability may grow). Moreover, simulations are performed either using mixture-averaged transport properties (low Lewis number flames) or setting diffusivities of all species equal to heat diffusivity of the mixture (equidiffusive flames), with all other things being equal. Obtained results show a significant increase in turbulent burning velocity U_{T} when the boundary Λ=Λ_{n} is crossed in weak turbulence, but almost equal values of U_{T} are computed at Λ<Λ_{n} and Λ>Λ_{n} in moderately turbulent flames characterized by a Karlovitz number equal to 3.4 or larger. These results imply that thermodiffusive instability of laminar premixed flames substantially affects burning velocity in weak turbulence only, in line with a simple criterion proposed by Chomiak and Lipatnikov (Phys. Rev. E 107, 015102, (2023)10.1103/PhysRevE.107.015102).

4.
Phys Rev E ; 100(1-1): 013107, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-31499779

RESUMO

While quantities conditioned to an isosurface of reaction progress variable c, which characterizes fluid state in a turbulent reacting flow, have been attracting rapidly growing interest in the recent literature, a mathematical and physical framework required for research into such quantities has not yet been elaborated properly. This paper aims at filling two fundamental gaps in this area, i.e., (i) ambiguities associated with a definition of a surface-averaged quantity and (ii) the lack of rigorous equations that describe evolutions of such quantities. In the first (theoretical) part of the paper, (a) analytical relations between differently defined (area-weighted and unweighted) surface-averaged quantities are obtained and differences between them (quantities) are discussed, (b) a unified method for deriving an evolution equation for bulk area-weighted surface-averaged value of a local characteristic ϕ of a turbulent reacting flow is developed, and (c) the method is applied for deriving evolution equations for the bulk area-weighted surface-averaged reaction-surface density |∇c|, local reaction-wave thickness 1/|∇c|, and local displacement speed S_{d}, i.e., the speed of an isosurface of the c(x,t) field with respect to the local flow. In the second (numerical) part of the paper, direct numerical simulation data obtained recently from a highly turbulent reaction wave are analyzed in order to (1) highlight substantial differences between area-weighted and unweighted surface-averaged quantities and (2) show that various terms in the derived evolution equations are amenable to accurate numerical evaluation in spite of appearance of the so-called zero-gradient points [C. H. Gibson, Phys. Fluids 11, 2305 (1968)PFLDAS0031-917110.1063/1.1691820] in a highly turbulent medium. Finally, the obtained analytical and numerical results are used to shed light on the paradox of local flame thinning and broadening which is widely discussed in the turbulent combustion literature.

5.
Phys Rev E ; 95(6-1): 063101, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28709298

RESUMO

A three-dimensional (3D) direct numerical simulation (DNS) study of the propagation of a reaction wave in forced, constant-density, statistically stationary, homogeneous, isotropic turbulence is performed by solving Navier-Stokes and reaction-diffusion equations at various (from 0.5 to 10) ratios of the rms turbulent velocity U^{'} to the laminar wave speed, various (from 2.1 to 12.5) ratios of an integral length scale of the turbulence to the laminar wave thickness, and two Zeldovich numbers Ze=6.0 and 17.1. Accordingly, the Damköhler and Karlovitz numbers are varied from 0.2 to 25.1 and from 0.4 to 36.2, respectively. Contrary to an earlier DNS study of self-propagation of an infinitely thin front in statistically the same turbulence, the bending of dependencies of the mean wave speed on U^{'} is simulated in the case of a nonzero thickness of the local reaction wave. The bending effect is argued to be controlled by inefficiency of the smallest scale turbulent eddies in wrinkling the reaction-zone surface, because such small-scale wrinkles are rapidly smoothed out by molecular transport within the local reaction wave.

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