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1.
Biochem Biophys Res Commun ; 521(2): 347-352, 2020 01 08.
Artigo em Inglês | MEDLINE | ID: mdl-31668810

RESUMO

We had previously reported a prostaglandin E synthase (bmPGES) in the silkworm Bombyx mori that catalyzes the isomerization of PGH2 to PGE2. The present study aimed to provide a genome-editing characterization of bmPGES in B. mori. Results showed bmPGES gene disruption to result in a reduced content of PGE2. The change affected the expression of chorion genes and egg formation in silkworms. Collectively, the results indicated that bmPGES could be involved in reproduction of B. mori. Therefore, this study provides insights into the physiological role of bmPGES and PGE2 in silkworms.


Assuntos
Óvulo/crescimento & desenvolvimento , Prostaglandina-E Sintases/fisiologia , Animais , Bombyx , Córion , Dinoprostona/deficiência , Dinoprostona/fisiologia , Edição de Genes , Reprodução
2.
Genomics ; 111(6): 1231-1238, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-30114452

RESUMO

Spodoptera litura is a polyphagous pest and can feed on more than 100 species of plants, causing great damage to agricultural production. The SNP results showed that there were gene exchanges between different regions. To explore the variations of larger segments in S. litura genome, we used genome resequencing samples from 14 regions of China, India, and Japan to study the copy number variations (CNVs). We identified 3976 CNV events and 1581 unique copy number variation regions (CNVRs) occupying the 108.5 Mb genome of S. litura. A total of 5527 genes that overlapped with CNVRs were detected. Selection signal analysis identified 19 shared CNVRs and 105 group-specific CNVRs, whose related genes were involved in various biological processes in S. litura. We constructed the first CNVs map in S. litura genome, and our findings will be valuable for understanding the genomic variations and population differences of S. litura.


Assuntos
Variações do Número de Cópias de DNA , Spodoptera/genética , Animais , Expressão Gênica , Genes de Insetos , Genoma de Inseto , Seleção Genética , Spodoptera/metabolismo
3.
Artigo em Inglês | MEDLINE | ID: mdl-29235695

RESUMO

Two cDNAs encoding glutathione S-transferase (GST) of the tobacco cutworm, Spodoptera litura, were cloned by reverse transcriptase-polymerase chain reaction. The deduced amino acid sequences of the resulting clones revealed 32-51% identities to the epsilon-class GSTs from other organisms. The recombinant proteins were functionally overexpressed in Escherichia coli cells in soluble form and were purified to homogeneity. The enzymes were capable of catalyzing the bioconjugation of glutathione with 1-chloro-2,4-dinitrobenzene, 1,2-epoxy-3-(4-nitrophenoxy)-propane, and ethacrynic acid. A competition assay revealed that the GST activity was inhibited by insecticides, suggesting that it could be conducive to insecticide tolerance in the tobacco cutworm.


Assuntos
Glutationa Transferase/metabolismo , Spodoptera/enzimologia , Animais , Glutationa Transferase/química , Glutationa Transferase/genética , Glutationa Transferase/isolamento & purificação , Proteínas de Insetos/química , Proteínas de Insetos/genética , Proteínas de Insetos/isolamento & purificação , Proteínas de Insetos/metabolismo , Filogenia , Análise de Sequência de DNA
4.
J Biol Chem ; 290(2): 972-86, 2015 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-25371208

RESUMO

The genes responsible for silk biosynthesis are switched on and off at particular times in the silk glands of Bombyx mori. This switch appears to be under the control of endogenous and exogenous hormones. However, the molecular mechanisms by which silk protein synthesis is regulated by the juvenile hormone (JH) are largely unknown. Here, we report a basic helix-loop-helix transcription factor, Bmdimm, its silk gland-specific expression, and its direct involvement in the regulation of fibroin H-chain (fib-H) by binding to an E-box (CAAATG) element of the fib-H gene promoter. Far-Western blots, enzyme-linked immunosorbent assays, and co-immunoprecipitation assays revealed that Bmdimm protein interacted with another basic helix-loop-helix transcription factor, Bmsage. Immunostaining revealed that Bmdimm and Bmsage proteins are co-localized in nuclei. Bmdimm expression was induced in larval silk glands in vivo, in silk glands cultured in vitro, and in B. mori cell lines after treatment with a JH analog. The JH effect on Bmdimm was mediated by the JH-Met-Kr-h1 signaling pathway, and Bmdimm expression did not respond to JH by RNA interference with double-stranded BmKr-h1 RNA. These data suggest that the JH regulatory pathway, the transcription factor Bmdimm, and the targeted fib-H gene contribute to the synthesis of fibroin H-chain protein in B. mori.


Assuntos
Fatores de Transcrição Hélice-Alça-Hélice Básicos/genética , Fibroínas/genética , Proteínas de Insetos/genética , Hormônios Juvenis/genética , Seda/biossíntese , Animais , Fatores de Transcrição Hélice-Alça-Hélice Básicos/biossíntese , Bombyx/genética , Fibroínas/metabolismo , Proteínas de Insetos/biossíntese , Hormônios Juvenis/metabolismo , Larva , Regiões Promotoras Genéticas/genética , Sericinas/biossíntese , Sericinas/genética
5.
Proc Natl Acad Sci U S A ; 109(29): 11729-34, 2012 Jul 17.
Artigo em Inglês | MEDLINE | ID: mdl-22753472

RESUMO

The Krüppel homolog 1 gene (Kr-h1) has been proposed to play a key role in the repression of insect metamorphosis. Kr-h1 is assumed to be induced by juvenile hormone (JH) via a JH receptor, methoprene-tolerant (Met), but the mechanism of induction is unclear. To elucidate the molecular mechanism of Kr-h1 induction, we first cloned cDNAs encoding Kr-h1 (BmKr-h1) and Met (BmMet1 and BmMet2) homologs from Bombyx mori. In a B. mori cell line, BmKr-h1 was rapidly induced by subnanomolar levels of natural JHs. Reporter assays identified a JH response element (kJHRE), comprising 141 nucleotides, located ∼2 kb upstream from the BmKr-h1 transcription start site. The core region of kJHRE (GGCCTCCACGTG) contains a canonical E-box sequence to which Met, a basic helix-loop-helix Per-ARNT-Sim (bHLH-PAS) transcription factor, is likely to bind. In mammalian HEK293 cells, which lack an intrinsic JH receptor, ectopic expression of BmMet2 fused with Gal4DBD induced JH-dependent activity of an upstream activation sequence reporter. Meanwhile, the kJHRE reporter was activated JH-dependently in HEK293 cells only when cotransfected with BmMet2 and BmSRC, another bHLH-PAS family member, suggesting that BmMet2 and BmSRC jointly interact with kJHRE. We also found that the interaction between BmMet2 and BmSRC is dependent on JH. Therefore, we propose the following hypothesis for the mechanism of JH-mediated induction of BmKr-h1: BmMet2 accepts JH as a ligand, JH-liganded BmMet2 interacts with BmSRC, and the JH/BmMet2/BmSRC complex activates BmKr-h1 by interacting with kJHRE.


Assuntos
Bombyx/genética , Regulação da Expressão Gênica/fisiologia , Hormônios Juvenis/metabolismo , Fatores de Transcrição Kruppel-Like/metabolismo , Metamorfose Biológica/fisiologia , Animais , Sequência de Bases , Fatores de Transcrição Hélice-Alça-Hélice Básicos/metabolismo , Clonagem Molecular , DNA Complementar/genética , Regulação da Expressão Gênica/genética , Células HEK293 , Humanos , Metamorfose Biológica/genética , Dados de Sequência Molecular , Reação em Cadeia da Polimerase em Tempo Real , Análise de Sequência de DNA
6.
PLoS Genet ; 8(3): e1002486, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22412378

RESUMO

Insect molting and metamorphosis are intricately governed by two hormones, ecdysteroids and juvenile hormones (JHs). JHs prevent precocious metamorphosis and allow the larva to undergo multiple rounds of molting until it attains the proper size for metamorphosis. In the silkworm, Bombyx mori, several "moltinism" mutations have been identified that exhibit variations in the number of larval molts; however, none of them have been characterized molecularly. Here we report the identification and characterization of the gene responsible for the dimolting (mod) mutant that undergoes precocious metamorphosis with fewer larval-larval molts. We show that the mod mutation results in complete loss of JHs in the larval hemolymph and that the mutant phenotype can be rescued by topical application of a JH analog. We performed positional cloning of mod and found a null mutation in the cytochrome P450 gene CYP15C1 in the mod allele. We also demonstrated that CYP15C1 is specifically expressed in the corpus allatum, an endocrine organ that synthesizes and secretes JHs. Furthermore, a biochemical experiment showed that CYP15C1 epoxidizes farnesoic acid to JH acid in a highly stereospecific manner. Precocious metamorphosis of mod larvae was rescued when the wild-type allele of CYP15C1 was expressed in transgenic mod larvae using the GAL4/UAS system. Our data therefore reveal that CYP15C1 is the gene responsible for the mod mutation and is essential for JH biosynthesis. Remarkably, precocious larval-pupal transition in mod larvae does not occur in the first or second instar, suggesting that authentic epoxidized JHs are not essential in very young larvae of B. mori. Our identification of a JH-deficient mutant in this model insect will lead to a greater understanding of the molecular basis of the hormonal control of development and metamorphosis.


Assuntos
Bombyx/genética , Sistema Enzimático do Citocromo P-450/genética , Hormônios Juvenis/genética , Hormônios Juvenis/metabolismo , Larva/genética , Metamorfose Biológica/genética , Animais , Animais Geneticamente Modificados , Bombyx/crescimento & desenvolvimento , Corpora Allata/metabolismo , Ecdisteroides/metabolismo , Ácidos Graxos Insaturados/metabolismo , Regulação da Expressão Gênica no Desenvolvimento , Hemolinfa/metabolismo , Hormônios Juvenis/biossíntese , Larva/crescimento & desenvolvimento , Muda/genética , Mutação
7.
Proc Natl Acad Sci U S A ; 109(25): E1591-8, 2012 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-22635270

RESUMO

Bt toxins derived from the arthropod bacterial pathogen Bacillus thuringiensis are widely used for insect control as insecticides or in transgenic crops. Bt resistance has been found in field populations of several lepidopteran pests and in laboratory strains selected with Bt toxin. Widespread planting of crops expressing Bt toxins has raised concerns about the potential increase of resistance mutations in targeted insects. By using Bombyx mori as a model, we identified a candidate gene for a recessive form of resistance to Cry1Ab toxin on chromosome 15 by positional cloning. BGIBMGA007792-93, which encodes an ATP-binding cassette transporter similar to human multidrug resistance protein 4 and orthologous to genes associated with recessive resistance to Cry1Ac in Heliothis virescens and two other lepidopteran species, was expressed in the midgut. Sequences of 10 susceptible and seven resistant silkworm strains revealed a common tyrosine insertion in an outer loop of the predicted transmembrane structure of resistant alleles. We confirmed the role of this ATP-binding cassette transporter gene in Bt resistance by converting a resistant silkworm strain into a susceptible one by using germline transformation. This study represents a direct demonstration of Bt resistance gene function in insects with the use of transgenesis.


Assuntos
Transportadores de Cassetes de Ligação de ATP/genética , Substituição de Aminoácidos , Proteínas de Bactérias/farmacologia , Bombyx/genética , Endotoxinas/farmacologia , Proteínas Hemolisinas/farmacologia , Resistência a Inseticidas/genética , Mutação , Transportadores de Cassetes de Ligação de ATP/química , Sequência de Aminoácidos , Animais , Toxinas de Bacillus thuringiensis , Mapeamento Cromossômico , Ligação Genética , Dados de Sequência Molecular , Polimorfismo de Nucleotídeo Único , Homologia de Sequência de Aminoácidos
8.
Pest Manag Sci ; 80(6): 2587-2595, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38265118

RESUMO

BACKGROUND: Cry1Ab has emerged as a bio-insecticide to control Spodoptera litura (Lepidoptera: Noctuidae). However, the sublethal effects of Cry1Ab on the physiological changes and molecular level of S. litura have not been well documented. Our aims in this study were to assess the sublethal effect of Cry1Ab on S. litura, including midgut and Malpighian tubules as targets. RESULTS: After sublethal Cry1Ab exposure, distinct histological alterations were mainly observed in the midgut. Furthermore, the results of comparative RNA sequencing and tandem mass tag-based proteomics showed that, in the midgut, most differential expression genes (DEGs) were up-regulated and significantly enriched in the serine protease activity pathway, and up-regulated differential expression proteins (DEPs) were mainly associated with the oxidative phosphorylation pathway, whereas the down-regulated involved in the ribosome pathways. In the Malpighian tubules, DEGs and DEPs were significantly enriched in the ribosome pathway. We proposed that ribosome may act as a universal target in energy metabolism with other pathways via the results of protein-protein interaction analysis. Further, by verification of the mRNA expression of some Cry protein receptor and detoxification genes after Cry1Ab treatment, it was suggested that the ribosomal proteins (RPs) possibly participate in influencing the Bt-resistance of S. litura larvae under sublethal Cry1Ab exposure. CONCLUSION: Under sublethal Cry1Ab exposure, the midgut of S. litura was damaged, and the proteotranscriptomic analysis elucidated that Cry1Ab disrupted the energy homeostasis of larvae. Furthermore, we emphasized the potential role of ribosomes in sublethal Cry1Ab exposure. © 2024 Society of Chemical Industry.


Assuntos
Toxinas de Bacillus thuringiensis , Endotoxinas , Proteínas Hemolisinas , Larva , Túbulos de Malpighi , Spodoptera , Animais , Spodoptera/efeitos dos fármacos , Spodoptera/genética , Spodoptera/metabolismo , Spodoptera/crescimento & desenvolvimento , Túbulos de Malpighi/efeitos dos fármacos , Túbulos de Malpighi/metabolismo , Larva/efeitos dos fármacos , Larva/genética , Larva/crescimento & desenvolvimento , Larva/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/genética , Proteínas de Insetos/metabolismo , Proteínas de Insetos/genética , Transcriptoma , Trato Gastrointestinal/efeitos dos fármacos , Trato Gastrointestinal/metabolismo , Inseticidas/toxicidade , Proteoma , Proteômica , Sistema Digestório/efeitos dos fármacos , Sistema Digestório/metabolismo
9.
RNA ; 17(12): 2144-51, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-22020973

RESUMO

In the silkworm, Bombyx mori, the W chromosome plays a dominant role in female determination. However, neither protein-coding genes nor transcripts have so far been isolated from the W chromosome. Instead, a large amount of functional transposable elements and their remnants are accumulated on the W chromosome. PIWI-interacting RNAs (piRNAs) are 23-30-nt-long small RNAs that potentially act as sequence-specific guides for PIWI proteins to silence transposon activity in animal gonads. In this study, by comparing ovary- and testis-derived piRNAs, we identified numerous female-enriched piRNAs. Our data indicated that female-enriched piRNAs are derived from the W chromosome. Moreover, comparative analyses on piRNA profiles from a series of W chromosome mutant strains revealed a striking enrichment of a specific set of transposon-derived piRNAs in the putative sex-determining region. Collectively, we revealed the nature of the silkworm W chromosome as a source of piRNAs.


Assuntos
Bombyx/genética , Cromossomos de Insetos/genética , RNA Interferente Pequeno/genética , Cromossomos Sexuais/genética , Animais , Bombyx/metabolismo , Elementos de DNA Transponíveis , Feminino , Regulação da Expressão Gênica , Gônadas/metabolismo , Masculino , Modelos Genéticos , RNA Interferente Pequeno/metabolismo , Caracteres Sexuais , Processos de Determinação Sexual
10.
Proc Natl Acad Sci U S A ; 107(29): 12980-5, 2010 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-20615980

RESUMO

Pigmentation patterning has long interested biologists, integrating topics in ecology, development, genetics, and physiology. Wild-type neonatal larvae of the silkworm, Bombyx mori, are completely black. By contrast, the epidermis and head of larvae of the homozygous recessive sex-linked chocolate (sch) mutant are reddish brown. When incubated at 30 degrees C, mutants with the sch allele fail to hatch; moreover, homozygous mutants carrying the allele sch lethal (sch(l)) do not hatch even at room temperature (25 degrees C). By positional cloning, we narrowed a region containing sch to 239,622 bp on chromosome 1 using 4,501 backcross (BC1) individuals. Based on expression analyses, the best sch candidate gene was shown to be tyrosine hydroxylase (BmTh). BmTh coding sequences were identical among sch, sch(l), and wild-type. However, in sch the approximately 70-kb sequence was replaced with approximately 4.6 kb of a Tc1-mariner type transposon located approximately 6 kb upstream of BmTh, and in sch(l), a large fragment of an L1Bm retrotransposon was inserted just in front of the transcription start site of BmTh. In both cases, we observed a drastic reduction of BmTh expression. Use of RNAi with BmTh prevented pigmentation and hatching, and feeding of a tyrosine hydroxylase inhibitor also suppressed larval pigmentation in the wild-type strain, pnd(+) and in a pS (black-striped) heterozygote. Feeding L-dopa to sch neonate larvae rescued the mutant phenotype from chocolate to black. Our results indicate the BmTh gene is responsible for the sch mutation, which plays an important role in melanin synthesis producing neonatal larval color.


Assuntos
Bombyx/enzimologia , Bombyx/genética , Genes de Insetos/genética , Mutação/genética , Pigmentação/genética , Caracteres Sexuais , Tirosina 3-Mono-Oxigenase/metabolismo , Animais , Mapeamento Cromossômico , Ligação Genética , Genoma/genética , Larva , Fenótipo , Reprodutibilidade dos Testes
11.
BMC Biol ; 10: 46, 2012 May 31.
Artigo em Inglês | MEDLINE | ID: mdl-22651552

RESUMO

BACKGROUND: Body coloration is an ecologically important trait that is often involved in prey-predator interactions through mimicry and crypsis. Although this subject has attracted the interest of biologists and the general public, our scientific knowledge on the subject remains fragmentary. In the caterpillar of the swallowtail butterfly Papilio xuthus, spectacular changes in the color pattern are observed; the insect mimics bird droppings (mimetic pattern) as a young larva, and switches to a green camouflage coloration (cryptic pattern) in the final instar. Despite the wide variety and significance of larval color patterns, few studies have been conducted at a molecular level compared with the number of studies on adult butterfly wing patterns. RESULTS: To obtain a catalog of genes involved in larval mimetic and cryptic pattern formation, we constructed expressed sequence tag (EST) libraries of larval epidermis for P. xuthus, and P. polytes that contained 20,736 and 5,376 clones, respectively, representing one of the largest collections available in butterflies. A comparison with silkworm epidermal EST information revealed the high expression of putative blue and yellow pigment-binding proteins in Papilio species. We also designed a microarray from the EST dataset information, analyzed more than five stages each for six markings, and confirmed spatial expression patterns by whole-mount in situ hybridization. Hence, we succeeded in elucidating many novel marking-specific genes for mimetic and cryptic pattern formation, including pigment-binding protein genes, the melanin-associated gene yellow-h3, the ecdysteroid synthesis enzyme gene 3-dehydroecdysone 3b-reductase, and Papilio-specific genes. We also found many cuticular protein genes with marking specificity that may be associated with the unique surface nanostructure of the markings. Furthermore, we identified two transcription factors, spalt and ecdysteroid signal-related E75, as genes expressed in larval eyespot markings. This finding suggests that E75 is a strong candidate mediator of the hormone-dependent coordination of larval pattern formation. CONCLUSIONS: This study is one of the most comprehensive molecular analyses of complicated morphological features, and it will serve as a new resource for studying insect mimetic and cryptic pattern formation in general. The wide variety of marking-associated genes (both regulatory and structural genes) identified by our screening indicates that a similar strategy will be effective for understanding other complex traits.


Assuntos
Borboletas/anatomia & histologia , Borboletas/genética , Regulação da Expressão Gênica no Desenvolvimento , Proteínas de Insetos/genética , Pigmentos Biológicos/genética , 3-Hidroxiesteroide Desidrogenases/genética , 3-Hidroxiesteroide Desidrogenases/metabolismo , Animais , Borboletas/crescimento & desenvolvimento , Borboletas/metabolismo , Ecdisteroides/genética , Ecdisteroides/metabolismo , Etiquetas de Sequências Expressas , Genes de Insetos , Proteínas de Insetos/metabolismo , Larva/enzimologia , Larva/genética , Larva/crescimento & desenvolvimento , Larva/metabolismo , Melaninas/genética , Melaninas/metabolismo , Análise de Sequência com Séries de Oligonucleotídeos , Pigmentação , Pigmentos Biológicos/metabolismo
12.
Genome ; 55(7): 493-504, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22703239

RESUMO

The larval head cuticle and anal plates of the silkworm mutant cheek and tail spot (cts) have chocolate-colored spots, unlike the entirely white appearance of the wild-type (WT) strain. We report the identification and characterization of the gene responsible for the cts mutation. Positional cloning revealed a cts candidate on chromosome 16, designated BmMFS, based on the high similarity of the deduced amino acid sequence between the candidate gene from the WT strain and the major facilitator superfamily (MFS) protein. BmMFS likely encodes a membrane protein with 11 putative transmembrane domains, while the putative structure deduced from the cts-type allele possesses only 10-pass transmembrane domains owing to a deletion in its coding region. Quantitative RT-PCR analysis showed that BmMFS mRNA was strongly expressed in the integument of the head and tail, where the cts phenotype is observed; expression markedly increased at the molting and newly ecdysed stages. These results indicate that the novel BmMFS gene is cts and the membrane structure of its protein accounts for the cts phenotype. These expression profiles and the cts phenotype are quite similar to those of melanin-related genes, such as Bmyellow-e and Bm-iAANAT, suggesting that BmMFS is involved in the melanin synthesis pathway.


Assuntos
Bombyx/genética , Proteínas de Insetos/genética , Mutação , Sequência de Aminoácidos , Animais , Sequência de Bases , Bombyx/metabolismo , Clonagem de Organismos , Genes de Insetos , Proteínas de Insetos/metabolismo , Dados de Sequência Molecular , Fenótipo , RNA Mensageiro/metabolismo , Alinhamento de Sequência , Análise de Sequência de DNA
13.
Zoolog Sci ; 29(5): 333-9, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22559968

RESUMO

The insect brain secretes prothoracicotropic hormone (PTTH), which stimulates the prothoracic gland to synthesize ecdysone. The active metabolite of ecdysone, 20-hydroxyecdysone (20E), works through ecdysone receptor (EcR) and ultraspiracle (USP) to initiate molting and metamorphosis by regulating downstream genes. Previously, we found that EcR was expressed in the PTTH-producing neurosecretory cells (PTPCs) in larval brain of the silkworm Bombyx mori, suggesting that PTPCs function as the master cells of development under the regulation of 20E. To gain a better understanding of the molecular mechanism of the 20E control of PTPCs, we performed a comprehensive screening of genes induced by 20E using DNA microarray with brains of day-2 fifth instar silkworm larvae. Forty-one genes showed greater than twofold changes caused by artificial application of 20E. A subsequent semiquantitative screening identified ten genes upregulated by 20E, four of which were novel or not previously identified as 20E-response genes. Developmental profiling determined that two genes, UP4 and UP5, were correlated with the endogenous ecdysteroid titer. Whole-mount in situ hybridization showed exclusive expression of these two genes in two pairs of cells in the larval brain in response to 20E-induction, suggesting that the cells are PTPCs. BLAST searches revealed that UP4 and UP5 are Bombyx homologs of vrille and tarsal-less, respectively. The present study identifies 20E-induced genes that may be involved in the ecdysone signal hierarchies underlying pupal-adult development and/or the 20E regulation of PTPCs.


Assuntos
Bombyx/efeitos dos fármacos , Bombyx/metabolismo , Encéfalo/efeitos dos fármacos , Encéfalo/metabolismo , Ecdisterona/farmacologia , Regulação da Expressão Gênica/efeitos dos fármacos , Animais , Perfilação da Expressão Gênica , Larva/efeitos dos fármacos , Larva/metabolismo , Análise de Sequência com Séries de Oligonucleotídeos
14.
Nucleic Acids Res ; 38(Database issue): D453-6, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19793867

RESUMO

The SilkDB is an open-access database for genome biology of the silkworm (Bombyx mori). Since the draft sequence was completed and the SilkDB was first released 5 years ago, we have collaborated with other groups to make much remarkable progress on silkworm genome research, such as the completion of a new high-quality assembly of the silkworm genome sequence as well as the construction of a genome-wide microarray to survey gene expression profiles. To accommodate these new genomic data and house more comprehensive genomic information, we have reconstructed SilkDB database with new web interfaces. In the new version (v2.0) of SilkDB, we updated the genomic data, including genome assembly, gene annotation, chromosomal mapping, orthologous relationship and experiment data, such as microarray expression data, Expressed Sequence Tags (ESTs) and corresponding references. Several new tools, including SilkMap, Silkworm Chromosome Browser (SCB) and BmArray, are developed to access silkworm genomic data conveniently. SilkDB is publicly available at the new URL of http://www.silkdb.org.


Assuntos
Bombyx/genética , Biologia Computacional/métodos , Bases de Dados Genéticas , Bases de Dados de Ácidos Nucleicos , Animais , Biologia Computacional/tendências , Bases de Dados de Proteínas , Etiquetas de Sequências Expressas , Genômica , Humanos , Armazenamento e Recuperação da Informação/métodos , Internet , Família Multigênica , Análise de Sequência com Séries de Oligonucleotídeos , Software , Interface Usuário-Computador
15.
J Biol Chem ; 285(8): 5624-9, 2010 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-19996320

RESUMO

Yellow proteins form a large family in insects. In Drosophila melanogaster, there are 14 yellow genes in the genome. Previous studies have shown that the yellow gene is necessary for normal pigmentation; however, the roles of other yellow genes in body coloration are not known. Here, we provide the first evidence that yellow-e is required for normal body color pattern in insect larvae. In two mutant strains, bts and its allele bts2, of the silkworm Bombyx mori, the larval head cuticle and anal plates are reddish brown instead of the white color found in the wild type. Positional cloning revealed that deletions in the Bombyx homolog of the Drosophila yellow-e gene (Bmyellow-e) were responsible for the bts/bts2 phenotype. Bmyellow-e mRNA was strongly expressed in the trachea, testis, and integument, and expression markedly increased at the molting stages. This profile is quite similar to that of Bmyellow, a regulator of neonatal body color and body markings in Bombyx. Quantitative reverse transcription-PCR analysis showed that Bmyellow-e mRNA was heavily expressed in the integument of the head and tail in which the bts phenotype is observed. The present results suggest that Yellow-e plays a crucial role in the pigmentation process of lepidopteran larvae.


Assuntos
Bombyx/genética , Hormônios de Inseto/genética , Proteínas de Insetos/genética , Pigmentação/genética , Animais , Sequência de Bases , Bombyx/embriologia , Drosophila melanogaster , Cabeça/embriologia , Hormônios de Inseto/biossíntese , Proteínas de Insetos/biossíntese , Larva/genética , Larva/metabolismo , Dados de Sequência Molecular , Fenótipo , RNA Mensageiro/biossíntese , RNA Mensageiro/genética , Cauda/embriologia
16.
J Biol Chem ; 285(37): 28635-42, 2010 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-20622022

RESUMO

In the blood (hemolymph) of the silkworm Bombyx mori, the insect cytokine paralytic peptide (PP) is converted from an inactive precursor to an active form in response to the cell wall components of microorganisms and contributes to silkworm resistance to infection. To investigate the molecular mechanism underlying the up-regulation of host resistance induced by PP, we performed an oligonucleotide microarray analysis on RNA of blood cells (hemocytes) and fat body tissues of silkworm larvae injected with active PP. Expression levels of a large number of immune-related genes increased rapidly within 3 h after injecting active PP, including phagocytosis-related genes such as tetraspanin E, actin A1, and ced-6 in hemocytes, and antimicrobial peptide genes cecropin A and moricin in the fat body. Active PP promoted in vitro and in vivo phagocytosis of Staphyloccocus aureus by the hemocytes. Moreover, active PP induced in vivo phosphorylation of p38 mitogen-activated protein kinase (p38 MAPK) in the fat body. Pretreatment of silkworm larvae with ML3403, a pharmacologic p38 MAPK inhibitor, suppressed the PP-dependent induction of cecropin A and moricin genes in the fat body. Injection of active PP delayed the killing of silkworm larvae by S. aureus, whereas its effect was abolished by preinjection of the p38 MAPK inhibitor, suggesting that p38 MAPK activation is required for PP-dependent defensive responses. These findings suggest that PP acts on multiple tissues in silkworm larvae and acutely activates cellular and humoral immune responses, leading to host protection against infection.


Assuntos
Bombyx/imunologia , Citocinas/farmacologia , Hemócitos/imunologia , Imunidade Humoral/efeitos dos fármacos , Proteínas de Insetos/imunologia , Proteínas de Insetos/farmacologia , Neuropeptídeos/farmacologia , Animais , Bombyx/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica/efeitos dos fármacos , Regulação da Expressão Gênica/imunologia , Hemócitos/metabolismo , Hemolinfa/imunologia , Hemolinfa/metabolismo , Imunidade Celular/efeitos dos fármacos , Imunidade Humoral/imunologia , Proteínas de Insetos/metabolismo , Larva/imunologia , Larva/metabolismo , Análise de Sequência com Séries de Oligonucleotídeos , Fagocitose/efeitos dos fármacos , Fagocitose/imunologia , Staphylococcus aureus/imunologia
17.
J Biol Chem ; 285(46): 35889-99, 2010 Nov 12.
Artigo em Inglês | MEDLINE | ID: mdl-20833722

RESUMO

Some organisms are able to survive the loss of almost all their body water content, entering a latent state known as anhydrobiosis. The sleeping chironomid (Polypedilum vanderplanki) lives in the semi-arid regions of Africa, and its larvae can survive desiccation in an anhydrobiotic form during the dry season. To unveil the molecular mechanisms of this resistance to desiccation, an anhydrobiosis-related Expressed Sequence Tag (EST) database was obtained from the sequences of three cDNA libraries constructed from P. vanderplanki larvae after 0, 12, and 36 h of desiccation. The database contained 15,056 ESTs distributed into 4,807 UniGene clusters. ESTs were classified according to gene ontology categories, and putative expression patterns were deduced for all clusters on the basis of the number of clones in each library; expression patterns were confirmed by real-time PCR for selected genes. Among up-regulated genes, antioxidants, late embryogenesis abundant (LEA) proteins, and heat shock proteins (Hsps) were identified as important groups for anhydrobiosis. Genes related to trehalose metabolism and various transporters were also strongly induced by desiccation. Those results suggest that the oxidative stress response plays a central role in successful anhydrobiosis. Similarly, protein denaturation and aggregation may be prevented by marked up-regulation of Hsps and the anhydrobiosis-specific LEA proteins. A third major feature is the predicted increase in trehalose synthesis and in the expression of various transporter proteins allowing the distribution of trehalose and other solutes to all tissues.


Assuntos
Chironomidae/genética , Desidratação/genética , Etiquetas de Sequências Expressas , Genes de Insetos/genética , Animais , Análise por Conglomerados , Bases de Dados Genéticas , Perfilação da Expressão Gênica , Biblioteca Gênica , Proteínas de Insetos/genética , Larva/genética , Dados de Sequência Molecular , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Fatores de Tempo
18.
J Biol Chem ; 285(10): 7739-51, 2010 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-20053988

RESUMO

The transport pathway of specific dietary carotenoids from the midgut lumen to the silk gland in the silkworm, Bombyx mori, is a model system for selective carotenoid transport because several genetic mutants with defects in parts of this pathway have been identified that manifest altered cocoon pigmentation. In the wild-type silkworm, which has both genes, Yellow blood (Y) and Yellow cocoon (C), lutein is transferred selectively from the hemolymph lipoprotein to the silk gland cells where it is accumulated into the cocoon. The Y gene encodes an intracellular carotenoid-binding protein (CBP) containing a lipid-binding domain known as the steroidogenic acute regulatory protein-related lipid transfer domain. Positional cloning and transgenic rescue experiments revealed that the C gene encodes Cameo2, a transmembrane protein gene belonging to the CD36 family genes, some of which, such as the mammalian SR-BI and the fruit fly ninaD, are reported as lipoprotein receptors or implicated in carotenoid transport for visual system. In C mutant larvae, Cameo2 expression was strongly repressed in the silk gland in a specific manner, resulting in colorless silk glands and white cocoons. The developmental profile of Cameo2 expression, CBP expression, and lutein pigmentation in the silk gland of the yellow cocoon strain were correlated. We hypothesize that selective delivery of lutein to specific tissue requires the combination of two components: 1) CBP as a carotenoid transporter in cytosol and 2) Cameo2 as a transmembrane receptor on the surface of the cells.


Assuntos
Bombyx , Carotenoides/metabolismo , Proteínas de Ligação a Ácido Graxo/metabolismo , Proteínas de Insetos/metabolismo , Proteínas de Membrana/metabolismo , Pigmentação/fisiologia , Seda/química , Sequência de Aminoácidos , Animais , Bombyx/anatomia & histologia , Bombyx/genética , Bombyx/metabolismo , Antígenos CD36/genética , Antígenos CD36/metabolismo , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Mapeamento Cromossômico , Proteínas de Ligação a Ácido Graxo/genética , Feminino , Regulação da Expressão Gênica no Desenvolvimento , Ligação Genética , Proteínas de Insetos/genética , Luteína/química , Luteína/metabolismo , Masculino , Proteínas de Membrana/genética , Dados de Sequência Molecular , Homologia de Sequência de Aminoácidos , Seda/metabolismo , Transgenes
19.
Zoolog Sci ; 28(8): 609-16, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21801003

RESUMO

Insulin family peptide members play key roles in regulating growth, metabolism, and reproduction. Bombyxin is an insulin-related peptide of the silkmoth Bombyx mori. We analyzed the full genome of B. mori and identified five novel bombyxin families, V to Z. We characterized the genomic organization and chromosomal location of the novel bombyxin family genes. In contrast to previously identified bombyxin genes, bombyxin-V and -Z genes had intervening introns at almost the same positions as vertebrate insulin genes. We performed reverse transcription-polymerase chain reaction and in situ hybridization in different tissues and developmental stages to observe their temporal and spatial expression patterns. The newly identified bombyxin genes were expressed in diverse tissues: bombyxin-V, -W, and -Y mRNAs were expressed in the brain and bombyxin-X mRNA in fat bodies. Bombyxin-Y gene was expressed in both brain and ovary of larval stages. High level of bombyxin-Z gene expression in the follicular cells may suggest its function in reproduction. The presence of a short C-peptide domain and an extended A chain domain, and high expression of bombyxin-X gene in the fat body cells during non-feeding stages suggest its insulin-like growth factor-like function. These results suggest that the bombyxin genes originated from a common ancestral gene, similar to the vertebrate insulin gene, and evolved into a diverse gene family with multiple functions.


Assuntos
Bombyx/genética , Regulação da Expressão Gênica/fisiologia , Genoma de Inseto , Neuropeptídeos/metabolismo , Sequência de Aminoácidos , Animais , Dados de Sequência Molecular , Família Multigênica , Neuropeptídeos/genética , Filogenia
20.
Proc Natl Acad Sci U S A ; 105(21): 7523-7, 2008 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-18495929

RESUMO

Bombyx mori densovirus type 2 (BmDNV-2), a parvo-like virus, replicates only in midgut columnar cells and causes fatal disease. The resistance expressed in some silkworm strains against the virus is determined by a single gene, nsd-2, which is characterized as nonsusceptibility irrespective of the viral dose. However, the responsible gene has been unknown. We isolated the nsd-2 gene by positional cloning. The virus resistance is caused by a 6-kb deletion in the ORF of a gene encoding a 12-pass transmembrane protein, a member of an amino acid transporter family, and expressed only in midgut. Germ-line transformation with a wild-type transgene expressed in the midgut restores susceptibility, showing that the defective membrane protein is responsible for resistance. Cumulatively, our data show that the membrane protein is a functional receptor for BmDNV-2. This is a previously undescribed report of positional cloning of a mutant gene in Bombyx and isolation of an absolute virus resistance gene in insects.


Assuntos
Sistemas de Transporte de Aminoácidos/genética , Bombyx/genética , Bombyx/virologia , Densovirus/fisiologia , Proteínas de Insetos/genética , Receptores Virais/genética , Sistemas de Transporte de Aminoácidos/química , Animais , Sequência de Bases , Passeio de Cromossomo , Deleção de Genes , Proteínas de Insetos/química , Intestinos/virologia , Membranas/virologia , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Receptores Virais/química , Análise de Sequência de DNA
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