Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 203
Filtrar
Mais filtros

Base de dados
País/Região como assunto
Tipo de documento
Intervalo de ano de publicação
1.
Rapid Commun Mass Spectrom ; 38(5): e9681, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38355884

RESUMO

RATIONALE: There are a growing number of examples of protomers formed via electrospray ionization (ESI) that do not fragment under mobile proton conditions, giving rise to distinct tandem mass spectra. To model the N-protomer of 4-aminobenzoic acid, here we study the gas-phase unimolecular and bimolecular chemistry of the 4-(carboxyphenyl)trimethylammonium ion. METHODS: 4-(Carboxyphenyl)trimethylammonium iodide was synthesized, purified via recrystallization and transferred to the gas phase via ESI. 4-(Carboxyphenyl)trimethylammonium ion, 7, was mass selected and subjected to collision-induced dissociation and ion-molecule reactions in a linear ion trap mass spectrometer. RESULTS: The major fragmentation channel for the fixed-charge cation 7 is methyl radical loss, whereas loss of trimethylamine and CO2 represents minor pathways. The free carboxylic acid functional group of 7 is unreactive toward a number of neutral reagents (methanol, acetone, acetonitrile, and N,N'-diisopropylcarbodiimide). 7 reacts very slowly with trimethylborate via addition-elimination, consistent with density functional theory (DFT) calculations that show this reaction is slightly endothermic. The deuterated cation 7(D) undergoes slow D/H exchange with ethanol, and DFT calculations reveal that a flip-flop mechanism operates. CONCLUSIONS: The free carboxylic group of 7 is not very reactive toward neutral reagents in the gas phase.

2.
J Phys Chem A ; 128(6): 977-988, 2024 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-38295100

RESUMO

Methide transfer reactions play important roles in many areas of chemistry, including the Grignard reaction, in the transmetalation steps of metal-catalyzed cross-coupling reactions, and in the generation of cationic metal polymerization catalysts. Methide affinities (MAs) are the key thermodynamic quantity that underpin such reactions, and yet comprehensive methide affinity scales are poorly developed. Here, B3LYP-D3BJ/def2-TZVP calculations are used to calculate the energy changes (MAs) for cations (MeZ → Z+ + Me-), neutrals (MeY- → Y + Me-), and anions (MeX2- → X- + Me-) derived from permethyl species of all group s and p elements. The MAs range from 2525.8 for the singlet cation F+ to -820.4 kJ/mol for the tetramethylborate anion, Me4B-. The cations show the clearest trends: the MAs in all cases decrease going down the group, while moving across a period, the MAs increase from group 1 to group 2 and then decrease for group 3, remaining about the same or with a modest increase moving to group 4, and then continue to increase across a period to a maximum for the halogens (group 17). The anions and dianions are sensitive to hypervalency; those elements that cannot expand the octet have very unfavorable MAs (e.g., MA of Me4C requires the formation of Me5C- and of Me4B- requires the formation of Me5B2-). To address whether the anion MeY- and dianion MeZ2- are stable, the vertical detachment energies of the anions and dianions were calculated. All of the anions are thermodynamically stable with respect to electron loss, except for Me4N-, while the dianions are all thermodynamically unstable with respect to electron loss. The kinetic stability of the dianions with respect to methide and electron loss was also evaluated for the lowest MAs. The only dianions that might be kinetically stable and observable in the gas phase are Me4Ca2-, Me4Sr2-, and Me4Ba2-. The dianion CF3CaF32- is predicted to be both thermodynamically and kinetically stable in the gas phase.

3.
J Org Chem ; 88(14): 9629-9644, 2023 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-36705983

RESUMO

Gas phase ion-molecule reactions between seleniranium ions, R-c-SeCH2CH2+, and cis-cyclooctene were used to probe electronic and steric effects of substituents on kinetics and branching ratios. The second-order rate coefficients increased in the order p-OMeC6H4 < C6H5 < p-BrC6H4 < p-CF3C6H4 < m-NO2C6H4, giving a Hammett plot with R2 = 0.98 and ρ = +1.66. The two main pathways include direct transfer of the selenium moiety to the incoming alkene (π-ligand exchange) and the less favored ring-opening by attack at an iranium carbon to give a cis-bicyclic selenonium ion as supported by density functional theory (DFT) calculations. Branching ratios of each pathway indicated that electron-withdrawing groups directed more attack at carbon than selenium in agreement with previous solution-phase results. Increased steric bulk on selenium was investigated by changing the R group from a methyl to t-butyl, which not only shut down π-ligand exchange but also significantly reduced the overall reactivity. Finally, the reactivity of the iranium ion derived from Se-methylselenocysteine was investigated and shown to react faster and favor π-ligand exchange as the leaving group was changed from ethene to acrylic acid.

4.
Mass Spectrom Rev ; 40(6): 782-810, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-32965774

RESUMO

Carboxylic acids are valuable organic substrates as they are widely available, easy to handle, and exhibit structural and functional variety. While they are used in many standard synthetic protocols, over the past two decades numerous studies have explored new modes of metal-mediated reactivity of carboxylic acids and their derivatives. Mass spectrometry-based studies can provide fundamental mechanistic insights into these new modes of reactivity. Here gas-phase models for the following catalytic transformations of carboxylic acids and their derivatives are reviewed: protodecarboxylation; dehydration; decarbonylation; reaction as coordinated bases in C-H bond activation; remote functionalization and decarboxylative C-C bond coupling. In each case the catalytic problem is defined, insights from gas-phase studies are highlighted, comparisons with condensed-phase systems are made and perspectives are reached. Finally, the potential role for mechanistic studies that integrate both gas- and condensed-phase studies is highlighted by recent studies on the discovery of new catalysts for the selective decomposition of formic acid and the invention of the new extrusion-insertion class of reactions for the synthesis of amides, thioamides, and amidines. © 2020 John Wiley & Sons Ltd. Mass Spec Rev.


Assuntos
Ácidos Carboxílicos , Metais , Ácidos Carboxílicos/química , Catálise , Espectrometria de Massas
5.
Chemistry ; 28(7): e202103130, 2022 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-34773654

RESUMO

High-valent tetraalkylcuprates(iii) and -argentates(iii) are key intermediates of copper- and silver-mediated C-C coupling reactions. Here, we investigate the previously reported contrasting reactivity of [RMiii Me3 ]- complexes (M=Cu, Ag and R=allyl) with energy-dependent collision-induced dissociation experiments, advanced quantum-chemical calculations and kinetic computations. The gas-phase fragmentation experiments confirmed the preferred formation of the [RCuMe]- anion upon collisional activation of the cuprate(iii) species, consistent with a homo-coupling reaction, whereas the silver analogue primarily yielded [AgMe2 ]- , consistent with a cross-coupling reaction. For both complexes, density functional theory calculations identified one mechanism for homo coupling and four different ones for cross coupling. Of these pathways, an unprecedented concerted outer-sphere cross coupling is of particular interest, because it can explain the formation of [AgMe2 ]- from the argentate(iii) species. Remarkably, the different C-C coupling propensities of the two [RMiii Me3 ]- complexes become only apparent when properly accounting for the multi-configurational character of the wave function for the key transition state of [RAgMe3 ]- . Backed by the obtained detailed mechanistic insight for the gas-phase reactions, we propose that the previously observed cross-coupling reaction of the silver complex in solution proceeds via the outer-sphere mechanism.

6.
Phys Chem Chem Phys ; 23(45): 25572-25589, 2021 Nov 24.
Artigo em Inglês | MEDLINE | ID: mdl-34783339

RESUMO

Haliranium ions are intermediates often involved in complex cyclisations, where their structure allows for control over stereospecific outcomes. Extending previous studies into their structure and reactivity in the gas phase, this work focuses on the bimolecular reactivity of ethyl bromiranium and iodiranium ions with cyclic alkenes. The products observed via mass spectrometry were broadly attributed to either addition by cyclohexene at the iranium carbon or attack at the heteroatom to undergo associative π-ligand exchange. The model proposed was supported by both kinetic experiments and DFT calculations, where the rate of parent ion consumption proceeded at the collision rate (Br: k2 = 1.25 × 10-9 and I: k2 = 1.28 × 10-9 cm3 molecule-1 s-1) with the subsequent partitioning dependent on the relative stability of the initial intermediates and the relatively large barriers present in the addition pathway. Exploration of the effect of cycloalkene ring strain on the iodiranium ion reactivity was conducted with a series of crossover experiments with 50 : 50 mixtures of either cyclohexene or cis-cyclooctene and styrene, where the outcomes were dependent on the competing ring strain relief gained by reaction with each neutral. The nature of the exchange transition state was determined to be pseudocoarctate following both natural bond orbital (NBO) and anisotropy of the induced current density (ACID) analysis.

7.
Phys Chem Chem Phys ; 23(44): 25038-25047, 2021 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-34605499

RESUMO

Photo-chemistry provides a non-intuitive but very powerful way to probe kinetically limited, sometimes thermodynamically non-favored reactions and, thus, access highly specific products. However, reactivity in the excited state is difficult to characterize directly, due to short lifetimes and challenges in controlling the reaction medium. Among photo-activatable reagents, rhodamine dyes find widespread uses due to a number of favorable properties including their high absorption coefficient. Their readily adaptable synthesis allows development of tailor-made dyes for specific applications. Remarkably, few studies have directly probed the chemical reactivity of their triplet excited state. Here we present a new conceptual approach to examine the specific chemistry of the triplet excited state. We have developed a pump (488 nm) - probe (600 nm) strategy to examine the gas-phase lifetime and reactivity of the triplet cation of Rhodamine 6G (3Rh6G+) in an ion trap mass spectrometer. The confounding effects of solvent, aggregation and formation of other reactive intermediates is thus avoided allowing fundamental reactivity to be explored. In the presence, in the ion trap, of helium seeded with 1% of nitric oxide (˙NO) (∼ 60 ion/˙NO collisions per second), the triplet lifetime is shortened from 1.9 s to 0.7 s. Simultaneously, the reaction products [Rh6G-H]˙+ and [Rh6G-H + NO]+ are observed. Reaction of 3Rh6G+ with ˙NO2 yields [Rh6G-H]˙+, [Rh6G-H + NO2]+ and [Rh6G-2H]+. None of these products are observed for the singlet, 1Rh6G+. DFT calculations suggest a stepwise mechanism only allowed from 3Rh6G+, in which H atom abstraction by ˙NOx (x = 1 or 2) yields [Rh6G-H]˙+ which, then, reacts with another ˙NOx molecule. This illustrates the power of light to initiate specific chemical reactions, and the relevance of gas-phase ion-molecule reaction approaches to understand stepwise reaction mechanism from specific excited states.


Assuntos
Óxido Nítrico/química , Rodaminas/química , Teoria da Densidade Funcional , Espectrometria de Massas , Estrutura Molecular , Processos Fotoquímicos
8.
J Chem Phys ; 154(22): 224301, 2021 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-34241235

RESUMO

Electrospray ionization of phenyl argentates formed by transmetalation reactions between phenyl lithium and silver cyanide provides access to the argentate aggregates, [AgnPhn+1]-, which were individually mass-selected for n = 2-8 in order to generate their gas-phase Ultraviolet Photodissociation (UVPD) "action" spectra over the range 304-399 nm. A strong bathochromic shift in optical spectra was observed with increasing size/n. Theoretical calculations allowed the assignment of the experimental UVPD spectra to specific isomer(s) and provided crucial insights into the transition from the 2D to 3D structure of the metallic component with the increasing size of the complex. The [AgnPhn+1]- aggregates contain neither pronounced metallic cluster properties nor ligated metallic cluster features and are thus not superatom complexes. They therefore represent novel organometallic characteristics built from Ag2Ph subunits.

9.
J Org Chem ; 85(4): 2680-2687, 2020 02 21.
Artigo em Inglês | MEDLINE | ID: mdl-31971390

RESUMO

The Ru(II)-catalyzed amidation of 2-arylpyridines with aryl isocyanates via C-H bond activation is less efficient than described previously, due to the formation of a series of side products, which were readily identified using direct infusion electrospray mass spectrometry and high-performance liquid chromatography-mass spectrometry.

10.
Chemistry ; 25(42): 9959-9966, 2019 Jul 25.
Artigo em Inglês | MEDLINE | ID: mdl-31090119

RESUMO

A series of zinc-based catalysts was evaluated for their efficiency in decomposing formic acid into molecular hydrogen and carbon dioxide in the gas phase using quadrupole ion trap mass spectrometry experiments. The effectiveness of the catalysts in the series [(L)Zn(H)]+ , where L=2,2':6',2''-terpyridine (tpy), 1,10-phenanthroline (phen) or 2,2'-bipyrydine (bpy), was found to depend on the ligand used, which turned out to be fundamental in tuning the catalytic properties of the zinc complex. Specifically, [(tpy)Zn(H)]+ displayed the fastest reaction with formic acid proceeding by dehydrogenation to produce the zinc formate complex [(tpy)Zn(O2 CH)]+ and H2 . The catalysts [(L)Zn(H)]+ are reformed by decarboxylating the zinc formate complexes [(L)Zn(O2 CH)]+ by collision-induced dissociation, which is the only reaction channel for each of the ligands used. The decarboxylation reaction was found to be reversible, since the zinc hydride complexes [(L)Zn(H)]+ react with carbon dioxide yielding the zinc formate complex. This reaction was again substantially faster for L=tpy than L=phen or bpy. The energetics and mechanisms of these processes were modelled using several levels of density functional theory (DFT) calculations. Experimental results are fully supported by the computational predictions.

11.
J Org Chem ; 84(16): 10076-10087, 2019 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-31328517

RESUMO

Ion-molecule reactions between thiiranium ion 11 (m/z 213) and cyclohexene and cis-cyclooctene resulted in the formation of addition products 17a and 17b (m/z 295 and m/z 323, respectively) via an electrophilic addition pathway. Associative π-ligand exchange involving direct transfer of the PhS+ moiety, which has been observed for analogous seleniranium ions in the gas phase, did not occur despite previous solution experiments suggesting it as a valid pathway. DFT calculations at the M06-2X/def2-TZVP level of theory showed high barriers for the exchange reaction, while the addition pathway was more plausible. Further support for this pathway was provided with Hammett plots showing the rate of reaction to increase as the benzylic position of thiiranium ion derivatives became more electrophilic (ρ = +1.69; R2 = 0.974). The more reactive isomeric sulfonium ion 22 was discounted as being responsible for the observed reactivity with infrared spectroscopy and DFT calculations suggesting little possibility for isomerization. To further explore the differences in reactivity, thiiranium ion 25 and sulfonium ion 27 were formed independently, with the latter ion reacting over 260 times faster toward cis-cyclooctene than the thiiranium ion rationalized by calculations suggesting a barrierless pathway for sulfonium ion 27 to react with the cycloalkene.

12.
J Phys Chem A ; 123(38): 8200-8207, 2019 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-31512874

RESUMO

The gas-phase ion-molecule identity exchange reactions of phenyl chalcogen iranium ions with alkenes have been examined experimentally in a linear ion trap mass spectrometer by isotope labeling experiments. The nature of both the alkene and the chalcogen play crucial roles, with the bimolecular rates for π-ligand exchange following the order: [PhTe(c-C6H10)]+ + c-C6D10 > [PhTe(C2D4)]+ + C2H4 > [PhSe(c-C6H10)]+ + c-C6D10, with no reaction being observed for [PhSe(C2D4)]+ + C2H4, [PhS(C2D4)]+ + C2H4, and [PhS(c-C6H10)]+ + c-C6D10. The experimental results correlate with RRKM modeling and density functional theory (DFT) calculations, which also demonstrates that these reactions proceed via associative mechanisms. Natural bond orbital (NBO) analysis reveals a shift in the association complexes from a σ-hole interaction to ones mirroring the π-p+ and n-π* at the transition state in accordance with the rates of reaction.

13.
J Chem Phys ; 151(16): 164306, 2019 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-31675859

RESUMO

Nitroimidazoles are important compounds in medicine, biology, and the food industry. The growing need for their structural assignment, as well as the need for the development of the detection and screening methods, provides the motivation to understand their fundamental properties and reactivity. Here, we investigated the decomposition of protonated ronidazole [Roni+H]+ in low-energy and high-energy collision-induced dissociation (CID) experiments. Quantum chemical calculations showed that the main fragmentation channels involve intramolecular proton transfer from nitroimidazole to its side chain followed by a release of NH2CO2H, which can proceed via two pathways involving transfer of H+ from (1) the N3 position via a barrier of TS2 of 0.97 eV, followed by the rupture of the C-O bond with a thermodynamic threshold of 2.40 eV; and (2) the -CH3 group via a higher barrier of 2.77 eV, but with a slightly lower thermodynamic threshold of 2.24 eV. Electrospray ionization of ronidazole using deuterated solvents showed that in low-energy CID, only pathway (1) proceeds, and in high-energy CID, both channels proceed with contributions of 81% and 19%. While both of the pathways are associated with small kinetic energy release of 10-23 meV, further release of the NO• radical has a KER value of 339 meV.

14.
Chemistry ; 24(9): 2070-2074, 2018 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-29337386

RESUMO

We report new structural motifs for Cu nanoclusters that conceptually represent seed crystals for large face-centred cubic (FCC) crystal growth. Kinetically controlled syntheses, high resolution mass spectrometry experiments for determination of the dication formulae and crystallographic characterisation were carried out for [Cu18 H16 (DPPE)6 ][BF4 ][Cl] (DPPE=bis(diphenylphosphino)ethane) and [Cu16 H14 (DPPA)6 ][(BF4 )2 ] (DPPA=bis(diphenylphosphino)amine) polyhydrido nanoclusters, which feature the unprecedented bifrustum and frustum metal-core architecture in metal nanoclusters. The Cu18 nanocluster contains two Cu9 frustum cupolae and the Cu16 nanocluster has one Cu9 frustum cupola and a Cu7 distorted hexagonal-shape base. Gas-phase experiments revealed that both Cu18 H16 and Cu16 H14 cores can spontaneously release H2 upon removal of one bisphosphine capping ligand.

15.
Rapid Commun Mass Spectrom ; 32(13): 1045-1052, 2018 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-29645303

RESUMO

RATIONALE: Potassium organotrifluoroborates (RBF3 K) are important reagents used in organic synthesis. Although mass spectrometry is commonly used to confirm their molecular formulae, the gas-phase fragmentation reactions of organotrifluoroborates and their alkali metal cluster ions have not been previously reported. METHODS: Negative-ion mode electrospray ionization (ESI) together with collision-induced dissociation (CID) using a triple quadrupole mass spectrometer were used to examine the fragmentation pathways for RBF3- (where R = CH3 , CH3 CH2 , CH3 (CH2 )3 , CH3 (CH2 )5 , c-C3 H5 , C6 H5 , C6 H5 CH2 , CH2 CHCH2 , CH2 CH, C6 H5 CO) and M(RBF3 )2- (M = Na, K), while density functional theory (DFT) calculations at the M06/def2-TZVP level were used to examine the structures and energies associated with fragmentation reactions for R = Me and Ph. RESULTS: Upon CID, preferentially elimination of HF occurs for RBF3- ions for systems where R = an alkyl anion, whereas R- formation is favoured when R = a stabilized anion. At higher collision energies loss of F- and additional HF losses are sometimes observed. Upon CID of M(RBF3 )2- , formation of RBF3- is the preferred pathway with some fluoride transfer observed only when M = Na. The DFT-calculated relative thermochemistry for competing fragmentation pathways is consistent with the experiments. CONCLUSIONS: The main fragmentation pathways of RBF3- are HF elimination and/or R- loss. This contrasts with the fragmentation reactions of other organometallate anions, where reductive elimination, beta hydride transfer and bond homolysis are often observed. The presence of fluoride transfer upon CID of Na(RBF3 )2- but not K(RBF3 )2- is in agreement with the known fluoride affinities of Na+ and K+ and can be rationalized by Pearson's HSAB theory.

16.
Org Biomol Chem ; 16(46): 9011-9020, 2018 11 28.
Artigo em Inglês | MEDLINE | ID: mdl-30427050

RESUMO

The combination of multistage mass spectrometry experiments employing the distonic radical approach together with DFT calculations are used to examine addition of the N-methyl-pyridinium-4-yl radical cation (γ-NMP) to iso(thio)cyanates in the gas-phase. The type of products formed depend on the nature of the iso(thio)cyanate: (1) hydrogen atom abstraction occurs for alkyl isocyanates; (2) aryl isocyanates undergo radical-ipso substitution; (3) radical attack occurs at the C[double bond, length as m-dash]C bond of allyl isocyanate; (4) radical attack occurs at the C[double bond, length as m-dash]S bond of isothiocyanates to generate S adducts of γ-NMP and isonitriles. DFT calculations provide insight into the reactivity differences of these heterocumulenes towards the electrophilic C-centered γ-distonic radical cations. Translation of these gas phase results to the solution phase were hampered by dominating radical recombination reactions which appear to be favoured over the radical-iso(thio)cyanate reactions.

17.
Nature ; 491(7426): 717-23, 2012 Nov 29.
Artigo em Inglês | MEDLINE | ID: mdl-23051753

RESUMO

Antigen-presenting molecules, encoded by the major histocompatibility complex (MHC) and CD1 family, bind peptide- and lipid-based antigens, respectively, for recognition by T cells. Mucosal-associated invariant T (MAIT) cells are an abundant population of innate-like T cells in humans that are activated by an antigen(s) bound to the MHC class I-like molecule MR1. Although the identity of MR1-restricted antigen(s) is unknown, it is present in numerous bacteria and yeast. Here we show that the structure and chemistry within the antigen-binding cleft of MR1 is distinct from the MHC and CD1 families. MR1 is ideally suited to bind ligands originating from vitamin metabolites. The structure of MR1 in complex with 6-formyl pterin, a folic acid (vitamin B9) metabolite, shows the pterin ring sequestered within MR1. Furthermore, we characterize related MR1-restricted vitamin derivatives, originating from the bacterial riboflavin (vitamin B2) biosynthetic pathway, which specifically and potently activate MAIT cells. Accordingly, we show that metabolites of vitamin B represent a class of antigen that are presented by MR1 for MAIT-cell immunosurveillance. As many vitamin biosynthetic pathways are unique to bacteria and yeast, our data suggest that MAIT cells use these metabolites to detect microbial infection.


Assuntos
Ácido Fólico/metabolismo , Antígenos de Histocompatibilidade Classe I/química , Antígenos de Histocompatibilidade Classe I/imunologia , Pterinas/química , Pterinas/imunologia , Linfócitos T/imunologia , Apresentação de Antígeno , Infecções Bacterianas/imunologia , Infecções Bacterianas/microbiologia , Sítios de Ligação , Linhagem Celular , Cristalografia por Raios X , Ácido Fólico/química , Ácido Fólico/imunologia , Antígenos de Histocompatibilidade/química , Antígenos de Histocompatibilidade/imunologia , Antígenos de Histocompatibilidade Classe I/metabolismo , Humanos , Vigilância Imunológica/imunologia , Células Jurkat , Ligantes , Ativação Linfocitária , Antígenos de Histocompatibilidade Menor , Modelos Moleculares , Redobramento de Proteína/efeitos dos fármacos , Pterinas/metabolismo , Pterinas/farmacologia , Salmonella/imunologia , Salmonella/metabolismo , Infecções por Salmonella/imunologia , Infecções por Salmonella/microbiologia , Eletricidade Estática , Microglobulina beta-2/imunologia , Microglobulina beta-2/metabolismo
18.
Anal Chem ; 89(11): 5748-5756, 2017 06 06.
Artigo em Inglês | MEDLINE | ID: mdl-28481086

RESUMO

Metabolic bioactivation of many different chemicals results in the formation of highly reactive compounds (chemically reactive metabolites, CRMs) that can lead to toxicity via binding to macromolecular targets (e.g., proteins or DNA). There is a need to develop robust, rapid, and nontargeted analytical techniques to determine the identity of the protein targets of CRMs and their sites of modification. Here, we introduce a nontargeted methodology capable of determining both the identity of a CRM formed from an administered compound as well as the protein targets modified by the reactive metabolite in a single experiment without prior information. Acetaminophen (N-acetyl-p-aminophenol, APAP) and 13C6-APAP were incubated with rat liver microsomes, which are known to bioactivate APAP to the reactive metabolite N-acetyl-p-benzoquinone imine (NAPQI). Global tryptic digestion followed by liquid chromatographic/mass spectrometric (LC/MS) analysis was used to locate "twin" ion peaks of peptides adducted by NAPQI and for shotgun proteomics via tandem mass spectrometry (MS/MS). By the development of blended data analytics software called Xenophile, the identity of the amino acid residue that was adducted can be established, which eliminates the need for specific parametrization of protein database search algorithms. This combination of experimental design and data analysis software allows the identity of a CRM, the protein target, and the amino acid residues that are modified to be rapidly established directly from experimental data. Xenophile is freely available from https://github.com/mgleeming/Xenophile .


Assuntos
Metabolismo , Compostos Orgânicos/metabolismo , Proteínas/metabolismo , Acetaminofen/metabolismo , Animais , Métodos , Microssomos Hepáticos/metabolismo , Compostos Orgânicos/análise , Ligação Proteica , Proteínas/análise , Proteômica/métodos , Ratos , Software , Espectrometria de Massas em Tandem
19.
J Org Chem ; 82(12): 6289-6297, 2017 06 16.
Artigo em Inglês | MEDLINE | ID: mdl-28530810

RESUMO

Collision-induced dissociation mass spectrometry of the ammonium ions 4a and 4b results in the formation of the seleniranium ion 5, the structure and purity of which were verified using gas-phase infrared spectroscopy coupled to mass spectrometry and gas-phase ion-mobility measurements. Ion-molecule reactions between the ion 5 (m/z = 261) and cyclopentene, cyclohexene, cycloheptene, and cyclooctene resulted in the formation of the seleniranium ions 7 (m/z = 225), 6 (m/z = 239), 8 (m/z = 253), and 9 (m/z = 267), respectively. Further reaction of seleniranium 6 with cyclopentene resulted in further π-ligand exchange giving seleniranium ion 7, confirming that direct π-ligand exchange between seleniranium ion 5 and cycloalkenes occurs in the gas phase. Pseudo-first-order kinetics established relative reaction efficiencies for π-ligand exchange for cyclopentene, cyclohexene, cycloheptene. and cyclooctene as 0.20, 0.07, 0.43, and 4.32. respectively. DFT calculations at the M06/6-31+G(d) level of theory provide the following insights into the mechanism of the π-ligand exchange reactions; the cycloalkene forms a complex with the seleniranium ion 5 with binding energies of 57 and 62 kJ/mol for cyclopentene and cyclohexene, respectively, with transition states for π-ligand exchange having barriers of 17.8 and 19.3 kJ/mol for cyclopentene and cyclohexene, respectively.

20.
Inorg Chem ; 56(5): 2387-2399, 2017 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-28186779

RESUMO

Gas-phase reactivity of the copper hydride anions [CuH2]- and [Cu2H3]- toward a range of neutral reagents has been examined via multistage mass spectrometry experiments in a linear ion trap mass spectrometer in conjunction with isotope labeling studies and Density Functional Theory (DFT) calculations. [CuH2]- is more reactive than [Cu2H3]-, consistent with DFT calculations, which show it has a higher energy HOMO. Experimentally, [CuH2]- was found to react with CS2 via hydride transfer to give thioformate (HCS2-) in competition with the formation of the organometallic [CuCS2]- ion via liberation of hydrogen; CO2 via insertion to produce [HCuO2CH]-; methyl iodide and allyl iodide to give I- and [CuHI]-; and 2,2,2-trifluoroethanol and 1-butanethiol via protonation to give hydrogen and the product anions [CuH(OCH2CF3)]- and [CuH(SBu)]-. In contrast, the weaker acid methanol was found to be unreactive. DFT calculations reveal that the differences in reactivity between CS2 and CO2 are due to the lower lying π* orbital of the former, which allows it to accept electron density from the Cu center to form the initial three-membered ring complex intermediate, [H2Cu(η2-CS2)]-. In contrast, CO2 undergoes the barrierless side-on hydride transfer promoted by the high electronegativity of the oxygen atoms. Side-on SN2 mechanisms for reactions of [CuH2]- with methyl iodide and allyl iodide are favored on the basis of DFT calculations. Finally, the DFT calculated barriers for protonation of [CuH2]- by methanol, 2,2,2-trifluoroethanol, and 1-butanethiol correlate with their gas-phase acidities, suggesting that reactivity is mainly controlled by the acidity of the substrate.

SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA