Detalhe da pesquisa
1.
An encoding generative modeling approach to dimension reduction and covariate adjustment in causal inference with observational studies.
Proc Natl Acad Sci U S A;
121(23): e2322376121, 2024 Jun 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38809705
2.
Comprehensive tissue deconvolution of cell-free DNA by deep learning for disease diagnosis and monitoring.
Proc Natl Acad Sci U S A;
120(28): e2305236120, 2023 07 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37399400
3.
Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment.
Hum Mol Genet;
32(21): 3105-3120, 2023 10 17.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37584462
4.
HiChIPdb: a comprehensive database of HiChIP regulatory interactions.
Nucleic Acids Res;
51(D1): D159-D166, 2023 01 06.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36215037
5.
Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm.
Proc Natl Acad Sci U S A;
119(1)2022 01 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34930827
6.
Density estimation using deep generative neural networks.
Proc Natl Acad Sci U S A;
118(15)2021 04 13.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33833061
7.
Time course regulatory analysis based on paired expression and chromatin accessibility data.
Genome Res;
30(4): 622-634, 2020 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32188700
8.
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting.
Brief Bioinform;
22(6)2021 11 05.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34180954
9.
A method for scoring the cell type-specific impacts of noncoding variants in personal genomes.
Proc Natl Acad Sci U S A;
117(35): 21364-21372, 2020 09 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32817564
10.
Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage.
Proc Natl Acad Sci U S A;
117(9): 4864-4873, 2020 03 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32071206
11.
DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning.
Nucleic Acids Res;
47(10): e60, 2019 06 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30869141
12.
Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations.
Proc Natl Acad Sci U S A;
115(30): 7723-7728, 2018 07 24.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29987051
13.
CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.
Nucleic Acids Res;
46(15): e89, 2018 09 06.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29897492
14.
Modeling gene regulation from paired expression and chromatin accessibility data.
Proc Natl Acad Sci U S A;
114(25): E4914-E4923, 2017 06 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28576882
15.
COSINE: non-seeding method for mapping long noisy sequences.
Nucleic Acids Res;
45(14): e132, 2017 Aug 21.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28586438
16.
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data.
Nucleic Acids Res;
45(10): 5666-5677, 2017 Jun 02.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28472398
17.
Simultaneous dimension reduction and adjustment for confounding variation.
Proc Natl Acad Sci U S A;
113(51): 14662-14667, 2016 12 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27930330
18.
Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks.
PLoS Comput Biol;
13(12): e1005875, 2017 12.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29281633
19.
Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.
Nucleic Acids Res;
43(18): e116, 2015 Oct 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26040699
20.
Learning regulatory programs by threshold SVD regression.
Proc Natl Acad Sci U S A;
111(44): 15675-80, 2014 Nov 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25331876