Detalhe da pesquisa
1.
Metagenomic Virome Sequencing in Living Donor and Recipient Kidney Transplant Pairs Revealed JC Polyomavirus Transmission.
Clin Infect Dis;
69(6): 987-994, 2019 08 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30508036
2.
Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.
PLoS Pathog;
13(3): e1006255, 2017 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28264054
3.
Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16.
J Antimicrob Chemother;
73(7): 1917-1929, 2018 07 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29635462
4.
Persistent mammalian orthoreovirus, coxsackievirus and adenovirus co-infection in a child with a primary immunodeficiency detected by metagenomic sequencing: a case report.
BMC Infect Dis;
18(1): 33, 2018 01 11.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29325543
5.
Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus.
Clin Infect Dis;
59(10): 1386-93, 2014 Nov 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25139962
6.
Deep sequencing of hepatitis C virus hypervariable region 1 reveals no correlation between genetic heterogeneity and antiviral treatment outcome.
BMC Infect Dis;
14: 389, 2014 Jul 13.
Artigo
em Inglês
| MEDLINE
| ID: mdl-25016390
7.
Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias.
BMC Genomics;
14: 501, 2013 Jul 24.
Artigo
em Inglês
| MEDLINE
| ID: mdl-23879730
8.
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.
Nucleic Acids Res;
38(21): 7400-9, 2010 Nov.
Artigo
em Inglês
| MEDLINE
| ID: mdl-20671025
9.
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data.
BMC Bioinformatics;
12: 119, 2011 Apr 26.
Artigo
em Inglês
| MEDLINE
| ID: mdl-21521499
10.
Hepatitis C virus (HCV) genotype 1b displays higher genetic variability of hypervariable region 1 (HVR1) than genotype 3.
Sci Rep;
9(1): 12846, 2019 09 06.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31492939
11.
Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation.
Nat Commun;
10(1): 3396, 2019 07 30.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31363119
12.
Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.
Genes (Basel);
10(9)2019 08 28.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31466373
13.
Next-generation sequencing analysis of a cluster of hepatitis C virus infections in a haematology and oncology center.
PLoS One;
13(3): e0194816, 2018.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29566084
14.
Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples.
Microbiome;
5(1): 94, 2017 08 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28789678
15.
MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing.
J Virol Methods;
240: 7-13, 2017 02.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27867045
16.
Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection.
PLoS One;
12(5): e0177340, 2017.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28542207
17.
Spouse-to-Spouse Transmission and Evolution of Hypervariable Region 1 and 5' Untranslated Region of Hepatitis C Virus Analyzed by Next-Generation Sequencing.
PLoS One;
11(2): e0150311, 2016.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26918636
18.
Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons.
Gene;
347(2): 175-82, 2005 Mar 14.
Artigo
em Inglês
| MEDLINE
| ID: mdl-15725378
19.
Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains.
Diagn Microbiol Infect Dis;
83(2): 133-8, 2015 Oct.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26231254
20.
HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model.
IEEE/ACM Trans Comput Biol Bioinform;
11(1): 182-91, 2014.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26355517