Implantation of Neuropixels probes for chronic recording of neuronal activity in freely behaving mice and rats.

How dynamic activity in neural circuits gives rise to behavior is a major area of interest in neuroscience. A key experimental approach for addressing this question involves measuring extracellular neuronal activity in awake, behaving animals. Recently developed Neuropixels probes have provided a step change in recording neural activity in large tissue volumes with high spatiotemporal resolution. This protocol describes the chronic implantation of Neuropixels probes in mice and rats using compact and reusable 3D-printed fixtures. The fixtures facilitate stable chronic in vivo recordings in freely behaving rats and mice. They consist of two parts: a covered main body and a skull connector. Single-, dual- and movable-probe fixture variants are available. After completing an experiment, probes are safely recovered for reimplantation by a dedicated retrieval mechanism. Fixture assembly and surgical implantation typically take 4-5 h, and probe retrieval takes ~30 min, followed by 12 h of incubation in probe cleaning agent. The duration of data acquisition depends on the type of behavioral experiment. Since our protocol enables stable, chronic recordings over weeks, it enables longitudinal large-scale single-unit data to be routinely obtained in a cost-efficient manner, which will facilitate many studies in systems neuroscience.

Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings.

Measuring the dynamics of neural processing across time scales requires following the spiking of thousands of individual neurons over milliseconds and months. To address this need, we introduce the Neuropixels 2.0 probe together with newly designed analysis algorithms. The probe has more than 5000 sites and is miniaturized to facilitate chronic implants in small mammals and recording during unrestrained behavior. High-quality recordings over long time scales were reliably obtained in mice and rats in six laboratories. Improved site density and arrangement combined with newly created data processing methods enable automatic post hoc correction for brain movements, allowing recording from the same neurons for more than 2 months. These probes and algorithms enable stable recordings from thousands of sites during free behavior, even in small animals such as mice.

System for recording from multiple flexible polyimide neural probes in freely behaving animals.

OBJECTIVE: Long-term electrophysiological recordings of neural activity in freely behaving animals are indispensable to advance the understanding of complex brain function. It is a technical challenge to chronically monitor the detailed activity across multiple distributed brain regions in freely behaving animals over a period of months. Here we present a new implant for inserting multiple flexible polyimide probes into freely behaving rats for monitoring the brain activity over a long time period. APPROACH: This brain implant integrates multiple flexible probes in small micromanipulator devices that ensure free behaviour of the animal. The probes are micromachined and the positioning mechanism is 3D-printed using stereolithography. Each probe is lowered by a screw-driven shuttle and guided through an exit tip before penetrating the rat's brain. MAIN RESULTS: The brain implant consists of 16 individually lowerable flexible polyimide probes that contain 16 embedded electrodes adding up to a total of 256 recording channels. The total travel distance is 8 mm. The assembly time of the device was only one day. The electrode impedance values had a mean of 335 kΩ and sample standard deviation of 107 kΩ after gold plating, excluding outliers. SIGNIFICANCE: For the first time, hyperdrive-assisted insertion of flexible multichannel probes was demonstrated. Local field potentials and neuronal spiking activity from freely behaving rats were recorded over months.