An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Grubaugh, Nathan D.; Gangavarapu, Karthik; Quick, Joshua; Matteson, Nathaniel L.; Jesus, Jaqueline Goes de; Main, Bradley J.; Tan, Amanda L.; Paul, Lauren M.; Brackney, Doug E.; Grewal, Saran; Gurfield, Nikos; Van Rompay, Koen K. A.; Isern, Sharon; Michael, Scott F.; Coffey, Lark L.; Loman, Nicholas J.; Andersen, Kristian G.

Grubaugh, Nathan D.; Gangavarapu, Karthik; Quick, Joshua; Matteson, Nathaniel L.; Jesus, Jaqueline Goes de; Main, Bradley J.; Tan, Amanda L.; Paul, Lauren M.; Brackney, Doug E.; Grewal, Saran; Gurfield, Nikos; Van Rompay, Koen K. A.; Isern, Sharon; Michael, Scott F.; Coffey, Lark L.; Loman, Nicholas J.; Andersen, Kristian G..

Afiliação

Grubaugh, Nathan D.; The Scripps Research Institute. Department of Immunology and Microbiology. La Jolla, CA, USA / Yale School of Public Health. Department of Epidemiology of Microbial Diseases. New Haven, CT, USA..

Article em En | ARCA | ID: arc-31947

Palavras-chave

Sequenciamento viral; Sequenciamento de amplificação; Evolução do Intrahost; Zika; West Nile; chamada de SNP; Viral sequencing; Amplicon sequencing; Intrahost evolution; Zika; West Nile; SNP calling

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