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A propagation-based seed-centric local community detection for multilayer environment: The case study of colon adenocarcinoma.
Pournoor, Ehsan; Mousavian, Zaynab; Nowzari-Dalini, Abbas; Masoudi-Nejad, Ali.
Afiliação
  • Pournoor E; Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
  • Mousavian Z; School of Mathematics, Statistics, and Computer Science, College of Science, University of Tehran, Tehran, Iran.
  • Nowzari-Dalini A; School of Mathematics, Statistics, and Computer Science, College of Science, University of Tehran, Tehran, Iran.
  • Masoudi-Nejad A; Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
PLoS One ; 16(8): e0255718, 2021.
Article em En | MEDLINE | ID: mdl-34370784
Regardless of all efforts on community discovery algorithms, it is still an open and challenging subject in network science. Recognizing communities in a multilayer network, where there are several layers (types) of connections, is even more complicated. Here, we concentrated on a specific type of communities called seed-centric local communities in the multilayer environment and developed a novel method based on the information cascade concept, called PLCDM. Our simulations on three datasets (real and artificial) signify that the suggested method outstrips two known earlier seed-centric local methods. Additionally, we compared it with other global multilayer and single-layer methods. Eventually, we applied our method on a biological two-layer network of Colon Adenocarcinoma (COAD), reconstructed from transcriptomic and post-transcriptomic datasets, and assessed the output modules. The functional enrichment consequences infer that the modules of interest hold biomolecules involved in the pathways associated with the carcinogenesis.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Adenocarcinoma / Neoplasias do Colo / Transcriptoma / Mapas de Interação de Proteínas Tipo de estudo: Diagnostic_studies / Evaluation_studies Limite: Humans Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Irã

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Adenocarcinoma / Neoplasias do Colo / Transcriptoma / Mapas de Interação de Proteínas Tipo de estudo: Diagnostic_studies / Evaluation_studies Limite: Humans Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Irã