Ecological integrity of tropical secondary forests: concepts and indicators.

Naturally regenerating forests or secondary forests (SFs) are a promising strategy for restoring large expanses of tropical forests at low cost and with high environmental benefits. This expectation is supported by the high resilience of tropical forests after natural disturbances, yet this resilience can be severely reduced by human impacts. Assessing the characteristics of SFs and their ecological integrity (EI) is essential to evaluating their role for conservation, restoration, and provisioning of ecosystem services. In this study, we aim to propose a concept and indicators that allow the assessment and classification of the EI of SFs. To this end, we review the literature to assess how EI has been addressed in different ecosystems and which indicators of EI are most commonly used for tropical forests. Building upon this knowledge we propose a modification of the concept of EI to embrace SFs and suggest indicators of EI that can be applied to different successional stages or stand ages. Additionally, we relate these indicators to ecosystem service provision in order to support the practical application of the theory. EI is generally defined as the ability of ecosystems to support and maintain composition, structure and function similar to the reference conditions of an undisturbed ecosystem. This definition does not consider the temporal dynamics of recovering ecosystems, such as SFs. Therefore, we suggest incorporation of an optimal successional trajectory as a reference in addition to the old-growth forest reference. The optimal successional trajectory represents the maximum EI that can be attained at each successional stage in a given region and enables the evaluation of EI at any given age class. We further suggest a list of indicators, the main ones being: compositional indicators (species diversity/richness and indicator species); structural indicators (basal area, heterogeneity of basal area and canopy cover); function indicators (tree growth and mortality); and landscape proxies (landscape heterogeneity, landscape connectivity). Finally, we discuss how this approach can assist in defining the value of SF patches to provide ecosystem services, restore forests and contribute to ecosystem conservation.

Biodiversity responses to restoration across the Brazilian Atlantic Forest.

The UN Decade on Ecosystem Restoration is focussing attention and resources on restoration globally. Nowhere is this more crucial than in tropical forests that harbor immense biodiversity, but have also undergone widespread deforestation over the past few decades. We performed a meta-analysis to investigate how biodiversity features respond to forest restoration across the Brazilian Atlantic Forest (BAF), one of the most threatened biodiversity hotspots in the world. We assembled biodiversity in different metrics of structure and diversity features of three taxonomic groups (vascular plants, soil microorganisms, and invertebrates), generating a dataset with 2370 observations from 76 primary studies. We quantified the incomplete recovery of biodiversity (i.e., the rate of recovery to a pre-disturbance state) occurring during the restoration process, which we called the 'recovery gap'. Our results revealed that forests undergoing restoration in the BAF show a recovery gap of 34% for structure features and 22% for diversity features in comparison to reference reforests, considering all taxonomic groups investigated. For vascular plants, soil microorganisms, and invertebrates the recovery gap ranged between 46 and 47%, 16-26%, and 4-7%, respectively. Overall, the recovery gap was influenced by the interaction of restoration actions (i.e., the past land use, restoration age and restoration approach - active and passive restoration), however, structure features responded more sensitively to the time elapsed since restoration started, while the recovery gap for diversity features depended more on the past land-use. Our study can help guide the prioritization of the aforenamed taxonomic groups in restoration, the regulation of potential biodiversity offsetting policies in the BAF, and understanding how coupled biodiversity features respond to the interaction of environmental conditions and restoration actions in a high fragmented tropical landscape.

Resource availability and disturbance shape maximum tree height across the Amazon.

Tall trees are key drivers of ecosystem processes in tropical forest, but the controls on the distribution of the very tallest trees remain poorly understood. The recent discovery of grove of giant trees over 80 meters tall in the Amazon forest requires a reevaluation of current thinking. We used high-resolution airborne laser surveys to measure canopy height across 282,750 ha of old-growth and second-growth forests randomly sampling the entire Brazilian Amazon. We investigated how resources and disturbances shape the maximum height distribution across the Brazilian Amazon through the relations between the occurrence of giant trees and environmental factors. Common drivers of height development are fundamentally different from those influencing the occurrence of giant trees. We found that changes in wind and light availability drive giant tree distribution as much as precipitation and temperature, together shaping the forest structure of the Brazilian Amazon. The location of giant trees should be carefully considered by policymakers when identifying important hot spots for the conservation of biodiversity in the Amazon.

Emerging threats linking tropical deforestation and the COVID-19 pandemic.

Tropical deforestation drivers are complex and can change rapidly in periods of profound societal transformation, such as those during a pandemic. Evidence suggests that the COVID-19 pandemic has spurred illegal, opportunistic forest clearing in tropical countries, threatening forest ecosystems and their resident human communities. A total of 9583 km2 of deforestation alerts from Global Land Analysis & Discovery (GLAD) were detected across the global tropics during the first month following the implementation of confinement measures of local governments to reduce COVID-19 spread, which is nearly double that of 2019 (4732 km2). We present a conceptual framework linking tropical deforestation and the current pandemic. Zoonotic diseases, public health, economy, agriculture, and forests may all be reciprocally linked in complex positive and negative feedback loops with overarching consequences. We highlight the emerging threats to nature and society resulting from this complex reciprocal interplay and possible policy interventions that could minimize these threats.

Persistent effects of fragmentation on tropical rainforest canopy structure after 20 yr of isolation.

Assessing the persistent impacts of fragmentation on aboveground structure of tropical forests is essential to understanding the consequences of land use change for carbon storage and other ecosystem functions. We investigated the influence of edge distance and fragment size on canopy structure, aboveground woody biomass (AGB), and AGB turnover in the Biological Dynamics of Forest Fragments Project (BDFFP) in central Amazon, Brazil, after 22+ yr of fragment isolation, by combining canopy variables collected with portable canopy profiling lidar and airborne laser scanning surveys with long-term forest inventories. Forest height decreased by 30% at edges of large fragments (>10 ha) and interiors of small fragments (<3 ha). In larger fragments, canopy height was reduced up to 40 m from edges. Leaf area density profiles differed near edges: the density of understory vegetation was higher and midstory vegetation lower, consistent with canopy reorganization via increased regeneration of pioneers following post-fragmentation mortality of large trees. However, canopy openness and leaf area index remained similar to control plots throughout fragments, while canopy spatial heterogeneity was generally lower at edges. AGB stocks and fluxes were positively related to canopy height and negatively related to spatial heterogeneity. Other forest structure variables typically used to assess the ecological impacts of fragmentation (basal area, density of individuals, and density of pioneer trees) were also related to lidar-derived canopy surface variables. Canopy reorganization through the replacement of edge-sensitive species by disturbance-tolerant ones may have mitigated the biomass loss effects due to fragmentation observed in the earlier years of BDFFP. Lidar technology offered novel insights and observational scales for analysis of the ecological impacts of fragmentation on forest structure and function, specifically aboveground biomass storage.

Fake legal logging in the Brazilian Amazon.

Declining deforestation rates in the Brazilian Amazon are touted as a conservation success, but illegal logging is a problem of similar scale. Recent regulatory efforts have improved detection of some forms of illegal logging but are vulnerable to more subtle methods that mask the origin of illegal timber. We analyzed discrepancies between estimated timber volumes of the national forest inventory of Brazil and volumes of logging permits as an indicator of potential fraud in the timber industry in the eastern Amazon. We found a strong overestimation bias of high-value timber species volumes in logging permits. Field assessments confirmed fraud for the most valuable species and complementary strategies to generate a "surplus" of licensed timber that can be used to legalize the timber coming from illegal logging. We advocate for changes to the logging control system to prevent overexploitation of Amazonian timber species and the widespread forest degradation associated with illegal logging.

Near-infrared spectrometry allows fast and extensive predictions of functional traits from dry leaves and branches.

The linking of individual functional traits to ecosystem processes is the basis for making generalizations in ecology, but the measurement of individual values is laborious and time consuming, preventing large-scale trait mapping. Also, in hyper-diverse systems, errors occur because identification is difficult, and species level values ignore intra-specific variation. To allow extensive trait mapping at the individual level, we evaluated the potential of Fourrier-Transformed Near Infra-Red Spectrometry (FT-NIR) to adequately describe 14 traits that are key for plant carbon, water, and nutrient balance. FT-NIR absorption spectra (1,000-2,500 nm) were obtained from dry leaves and branches of 1,324 trees of 432 species from a hyper-diverse Amazonian forest. FT-NIR spectra were related to measured traits for the same plants using partial least squares regressions. A further 80 plants were collected from a different site to evaluate model applicability across sites. Relative prediction error (RMSErel ) was calculated as the percentage of the trait value range represented by the final model RMSE. The key traits used in most functional trait studies; specific leaf area, leaf dry matter content, wood density and wood dry matter content can be well predicted by the model (R2  = 0.69-0.78, RMSErel  = 9-11%), while leaf density, xylem proportion, bark density and bark dry matter content can be moderately well predicted (R2  = 0.53-0.61, RMSErel  = 14-17%). Community-weighted means of all traits were well estimated with NIR, as did the shape of the frequency distribution of the community values for the above key traits. The model developed at the core site provided good estimations of the key traits of a different site. An evaluation of the sampling effort indicated that 400 or less individuals may be sufficient for establishing a good local model. We conclude that FT-NIR is an easy, fast and cheap method for the large-scale estimation of individual plant traits that was previously impossible. The ability to use dry intact leaves and branches unlocks the potential for using herbarium material to estimate functional traits; thus advancing our knowledge of community and ecosystem functioning from local to global scales.

Early ecological outcomes of natural regeneration and tree plantations for restoring agricultural landscapes.

Mixed tree plantings and natural regeneration are the main restoration approaches for recovering tropical forests worldwide. Despite substantial differences in implementation costs between these methods, little is known regarding how they differ in terms of ecological outcomes, which is key information for guiding decision making and cost-effective restoration planning. Here, we compared the early ecological outcomes of natural regeneration and tree plantations for restoring the Brazilian Atlantic Forest in agricultural landscapes. We assessed and compared vegetation structure and composition in young (7-20 yr old) mixed tree plantings (PL), second-growth tropical forests established on former pastures (SGp), on former Eucalyptus spp. plantations (SGe), and in old-growth reference forests (Ref). We sampled trees with diameter at breast height (DBH) 1-5 cm (saplings) and trees at DBH > 5 cm (trees) in a total of 32 20 × 45 m plots established in these landscapes. Overall, the ecological outcomes of natural regeneration and restoration plantations were markedly different. SGe forests showed higher abundance of large (DBH > 20 cm) nonnative species, of which 98% were resprouting Eucalyptus trees, than SGp and PL, and higher total aboveground biomass; however, aboveground biomass of native species was higher in PL than in SGe. PL forests had lower abundance of native saplings and lianas than both naturally established second-growth forests, and lower proportion of animal dispersed saplings than SGe, probably due to higher isolation from native forest remnants. Rarefied species richness of trees was lower in SGp, intermediate in SGe and Ref and higher in PL, whereas rarefied species richness of saplings was higher in SG than in Ref. Species composition differed considerably among regeneration types. Although these forests are inevitably bound to specific landscape contexts and may present varying outcomes as they develop through longer time frames, the ecological particularities of forests established through different restoration approaches indicate that naturally established forests may not show similar outcomes to mixed tree plantings. The results of this study underscore the importance that restoration decisions need to be based on more robust expectations of outcomes that allow for a better analysis of the cost-effectiveness of different restoration approaches before scaling-up forest restoration in the tropics.