RESUMEN
Paratuberculosis is a chronic disease of ruminants caused by Mycobacterium avium subspecies paratuberculosis (MAP). It occurs worldwide and causes a significant loss in the animal production industry. There is no cure for MAP infection and vaccination is problematic. Identification of genetics of susceptibility could be a useful adjunct for programs that focus on management, testing and culling of diseased animals. A case-control, genome-wide association study (GWAS) was conducted using Holstein and Jersey cattle in a combined analysis in order to identify markers and chromosomal regions associated with susceptibility to MAP infection across-breed. A mixed-model method (GRAMMAR-GC) implemented in the GenABEL R package and a Bayes C analysis implemented in GenSel software were used as alternative approaches to conduct GWAS analysis focused on single SNPs and chromosomal segments, respectively. After conducting quality control, 22 406 SNPs from 2157 individuals were available for the GRAMMAR-GC (Bayes C) analysis and 45 640 SNPs from 2199 individuals were available for the Bayes C analysis. One SNP located on BTA27 (8·6 Mb) was identified as moderately associated (P < 5 × 10-5, FDR = 0·44) in the GRAMMAR-GC analysis of the combined breed data. Nine 1 Mb windows located on BTA 2, 3 (3 windows), 6, 8, 25, 27 and 29 each explained ≥1% of the total proportion of genetic variance in the Bayes C analysis. In an analysis ignoring differences in linkage phase, two moderately significantly associated SNPs were identified; ARS-BFGL-NGS-19381 on BTA23 (32 Mb) and Hapmap40994-BTA-46361 on BTA19 (61 Mb). New common genomic regions and candidate genes have been identified from the across-breed analysis that might be involved in the immune response and susceptibility to MAP infection.
Asunto(s)
Enfermedades de los Bovinos/genética , Predisposición Genética a la Enfermedad/genética , Estudio de Asociación del Genoma Completo/veterinaria , Paratuberculosis/genética , Animales , Teorema de Bayes , Cruzamiento , Bovinos/genética , Variación Genética , Estudio de Asociación del Genoma Completo/métodos , Genotipo , Polimorfismo de Nucleótido Simple , Especificidad de la EspecieRESUMEN
Paratuberculosis, or Johne's disease, is a chronic, granulomatous, gastrointestinal tract disease of cattle and other ruminants caused by the bacterium Mycobacterium avium, subspecies paratuberculosis (MAP). Control of Johne's disease is based on programs of testing and culling animals positive for infection with MAP while concurrently modifying management to reduce the likelihood of infection. The current study is motivated by the hypothesis that genetic variation in host susceptibility to MAP infection can be dissected and quantifiable associations with genetic markers identified. For this purpose, a case-control, genome-wide association study was conducted using US Holstein cattle phenotyped for MAP infection using a serum ELISA and/or fecal culture test. Cases included cows positive for either serum ELISA, fecal culture or both. Controls consisted of animals negative for the serum ELISA test or both serum ELISA and fecal culture when both were available. Controls were matched by herd and proximal birth date with cases. A total of 856 cows (451 cases and 405 controls) were used in initial discovery analyses, and an additional 263 cows (159 cases and 104 controls) from the same herds were used as a validation data set. Data were analyzed in a single marker analysis controlling for relatedness of individuals (GRAMMAR-GC) and also in a Bayesian analysis in which multiple marker effects were estimated simultaneously (GenSel). For the latter, effects of non-overlapping 1 Mb marker windows across the genome were estimated. Results from the two discovery analyses were generally concordant; however, discovery results were generally not well supported in analysis of the validation data set. A combined analysis of discovery and validation data sets provided strongest support for SNPs and 1 Mb windows on chromosomes 1, 2, 6, 7, 17 and 29.
Asunto(s)
Predisposición Genética a la Enfermedad , Estudio de Asociación del Genoma Completo , Mycobacterium avium subsp. paratuberculosis/genética , Tuberculosis/genética , Animales , Teorema de Bayes , Bovinos , Heces/microbiología , Humanos , Fenotipo , Polimorfismo de Nucleótido Simple/genética , Tuberculosis/microbiología , Tuberculosis/veterinariaRESUMEN
Non-feed removal molting programme in commercial brown laying hens and its influence on pre-molting, post-molting and end of cycle egg quality traits were investigated. Overall 54 birds were randomly divided into three treatment groups and each group was fed with one of the following diets during 10 days of molting period: (i) grain barley, (ii) alfalfa meal, or (iii) commercial layer ration (non-molted control group). Eggs obtained from groups in pre-molting, post-molting and end of cycle periods were examined for several quality performance traits such as egg weight, specific gravity, shape index, shell strength, shell thickness, eggshell weight, haugh unit, albumen index, yolk index and yolk color. Results indicated that non-feed removal molting programme based particularly on grain barley had positive effect on egg quality traits in laying hens. Notably, yolk color and haugh unit, which are considered as the most important quality parameters from the consumer point of view, were relatively improved in barley molted group.
