DFT insights into the mechanism of O2 activation catalyzed by a structural and functional model of cysteine dioxygenase with tris(2-pyridyl)methane-based ligand architecture.

Cysteine dioxygenation is an important step in the metabolism of toxic L-cysteine (Cys) in the human body, carried out by cysteine dioxygenase enzyme (CDO). The disruption of this process is found to elicit neurological health issues. This work reports a computational investigation of mechanistic aspects of this reaction, using a recently reported tris(2-pyridyl)methane-based biomimetic model complex of CDO. The computed results indicate that, the initial SO2 bond formation process is the slowest step in the S-dioxygenation process, possessing an activation barrier of 12.7 kcal/mol. The remaining steps were found to be downhill requiring very small activation energies. The transition states were found to undergo spin crossover between triplet and quintet states, while the singlet surface remained unstable throughout the entire reaction. In essence, the mechanistic scheme and multistate reactivity pattern together with the relatively small computed rate-limiting activation barrier as well as the exothermic formation energy demonstrate that the model complex is an efficient biomimetic CDO model. In addition, the study also substantiates the involvement of Fe(IV)oxido intermediates in the mechanism of S-dioxygenation by the chosen model complex. The insights derived from the O2 activation process might pave way for development of more accurate CDO model catalysts that might be capable of even more efficiently mimicking the geometric, spectroscopic and functional features of the CDO enzyme.

Benzene Hydroxylation by Bioinspired Copper(II) Complexes: Coordination Geometry versus Reactivity.

A series of bioinspired copper(II) complexes of N4-tripodal and sterically crowded diazepane-based ligands have been investigated as catalysts for functionalization of the aromatic C-H bond. The tripodal-ligand-based complexes exhibited distorted trigonal-bipyramidal (TBP) geometry (τ, 0.70) around the copper(II) center; however, diazepane-ligand-based complexes adopted square-pyramidal (SP) geometry (τ, 0.037). The Cu-NPy bonds (2.003-2.096 Å) are almost identical and shorter than Cu-Namine bonds (2.01-2.148 Å). Also, their Cu-O (Cu-Owater, 1.988 Å; Cu-Otriflate, 2.33 Å) bond distances are slightly varied. All of the complexes exhibited Cu2+ → Cu+ redox couples in acetonitrile, where the redox potentials of TBP-based complexes (-0.251 to -0.383 V) are higher than those of SP-based complexes (-0.450 to -0.527 V). The d-d bands around 582-757 nm and axial patterns of electron paramagnetic resonance spectra [g∥, 2.200-2.251; A∥, (146-166) × 10-4 cm-1] of the complexes suggest the existence of five-coordination geometry. The bonding parameters showed K∥ > K⊥ for all complexes, corresponding to out-of-plane π bonding. The complexes catalyzed direct hydroxylation of benzene using 30% H2O2 and afforded phenol exclusively. The complexes with TBP geometry exhibited the highest amount of phenol formation (37%) with selectivity (98%) superior to that of diazepane-based complexes (29%), which preferred to adopt SP-based geometry. Hydroxylation of benzene likely proceeded via a CuII-OOH key intermediate, and its formation has been established by electrospray ionization mass spectrometry, vibrational, and electronic spectra. Their formation constants have been calculated as (2.54-11.85) × 10-2 s-1 from the appearance of an O (π*σ) → Cu ligand-to-metal charge-transfer transition around 370-390 nm. The kinetic isotope effect (KIE) experiments showed values of 0.97-1.12 for all complexes, which further supports the crucial role of Cu-OOH in catalysis. The 18O-labeling studies using H218O2 showed a 92% incorporation of 18O into phenol, which confirms H2O2 as the key oxygen supplier. Overall, the coordination geometry of the complexes strongly influenced the catalytic efficiencies. The geometry of one of the CuII-OOH intermediates has been optimized by the density functional theory method, and its calculated electronic and vibrational spectra are almost similar to the experimentally observed values.

Bioinspired models for an unusual 3-histidine motif of diketone dioxygenase enzyme.

Bioinspired models for contrasting the electronic nature of neutral tris-histidine with the anionic 2-histidine-1-carboxylate facial motif and their subsequent impact on catalysis are reported. Herewith, iron(ii) complexes [Fe(L)(CH3CN)3](SO3CF3)21-3 of tris(2-pyridyl)-based ligands (L) have been synthesized and characterized as accurate structural models for the neutral 3-histidine triad of the enzyme diketone dioxygenase (DKDO). The molecular structure of one of the complexes exhibits octahedral coordination geometry and Fe-N11py bond lengths [1.952(4) to 1.959(4) Å] close to the Fe-NHis bond distances (1.98 Å) of the 3-His triad in the resting state of the enzyme, as obtained by EXAFS studies. The diketonate substrate-adduct complexes [Fe(L)(acacR)](SO3CF3) (R = Me, Ph) of 1-3 have been obtained using Na(acacR) in acetonitrile. The Fe2+/3+ redox potentials of the complexes (1.05 to 1.2 V vs. Fc/Fc+) and their substrate adducts (1.02 to 1.19 V vs. Fc/Fc+) appeared at almost the same redox barrier. All diketonate adducts exhibit two Fe(ii) → acac MLCT bands around 338 to 348 and 430 to 490 nm. Exposure of these adducts to O2 results in the decay of both MLCT bands with a rate of (kO2) 5.37 to 9.41 × 10-3 M-1 s-1. The kO2 values were concomitantly accelerated 20 to 50 fold by the addition of H+ (acetic acid), which nicely models the rate enhancement in the enzyme kinetics by the glutamate residue (Glu98). The oxygenation of the phenyl-substituted adducts yielded benzoin and benzoic acid (40% to 71%) as cleavage products in the presence of H+ ions. Isotope-labeling experiments using 18O2 showed 47% incorporation of 18O in benzoic acid, which reveals that the oxygen originates from dioxygen. Thus, the present model complexes exhibit very similar chemical surroundings to the active site of DKDO and mimic its functions elegantly. On the basis of these results, the C-C bond cleavage reaction mechanism is discussed.

A Structural and Functional Model for the Tris-Histidine Motif in Cysteine Dioxygenase.

The iron(II) complexes [Fe(L)(MeCN)3 ](SO3 CF3 )2 (L are two derivatives of tris(2-pyridyl)-based ligands) have been synthesized as models for cysteine dioxygenase (CDO). The molecular structure of one of the complexes exhibits octahedral coordination geometry and the Fe-Npy bond lengths [1.953(4)-1.972(4) Å] are similar to those in the Cys-bound FeII -CDO; Fe-NHis : 1.893-2.199 Å. The iron(II) centers of the model complexes exhibit relatively high FeIII/II redox potentials (E1/2 =0.988-1.380 V vs. ferrocene/ferrocenium electrode, Fc/Fc+ ), within the range for O2 activation and typical for the corresponding nonheme iron enzymes. The reaction of in situ generated [Fe(L)(MeCN)(SPh)]+ with excess O2 in acetonitrile (MeCN) yields selectively the doubly oxygenated phenylsulfinic acid product. Isotopic labeling studies using 18 O2 confirm the incorporation of both oxygen atoms of O2 into the product. Kinetic and preliminary DFT studies reveal the involvement of an FeIII peroxido intermediate with a rhombic S= 1 / 2 FeIII center (687-696 nm; g≈2.46-2.48, 2.13-2.15, 1.92-1.94), similar to the spectroscopic signature of the low-spin Cys-bound FeIII CDO (650 nm, g≈2.47, 2.29, 1.90). The proposed FeIII peroxido intermediates have been trapped, and the O-O stretching frequencies are in the expected range (approximately 920 and 820 cm-1 for the alkyl- and hydroperoxido species, respectively). The model complexes have a structure similar to that of the enzyme and structural aspects as well as the reactivity are discussed.

Nickel(ii) complexes of a 3N ligand as a model for diketone cleaving unusual nickel(ii)-dioxygenase enzymes.

Diketone substrate bound nickel(ii) complexes of 2,6-bis(1-methylbenzimidazolyl)pyridine have been synthesized and characterized as relevant active site models for unusual diketone cleaving Ni(ii)-dependent enzymes Ni-ARD and DKDO. The average Ni-Npy/benzim bond distances (2.050-2.107 Å) of model complexes are almost identical to the Ni-NHis bond distances of NiII-ARD (2.02-2.19 Å). The reaction of these adducts with dioxygen exhibited C-C cleavage with the rate of kO2, 5.24-73.71 × 10-3 M-1 s-1. The phenyl substituted adduct regioselectively elicits 52% of benzoic acid as the major product.