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1.
Cell Death Discov ; 10(1): 433, 2024 Oct 10.
Artículo en Inglés | MEDLINE | ID: mdl-39389941

RESUMEN

Diabetes mellitus is a metabolic disorder with persistent hyperglycemia caused by a variety of underlying factors. Chronic hyperglycemia can lead to diverse serious consequences and diversified complications, which pose a serious threat to patients. Among the major complications are cardiovascular disease, kidney disease, diabetic foot ulcers, diabetic retinopathy, and neurological disorders. Heme oxygenase 1 (HO-1) is a protective enzyme with antioxidant, anti-inflammatory and anti-apoptotic effects, which has been intensively studied and plays an important role in diabetic complications. By inducing the expression and activity of HO-1, it can enhance the antioxidant, anti-inflammatory, and anti-apoptotic capacity of tissues, and thus reduce the degree of damage in diabetic complications. The present study aims to review the relationship between HO-1 and the pathogenesis of diabetes and its complications. HO-1 is involved in the regulation of macrophage polarization and promotes the M1 state (pro-inflammatory) towards to the M2 state (anti-inflammatory). Induction of HO-1 expression in dendritic cells inhibits them maturation and secretion of pro-inflammatory cytokines and promotes regulatory T cell (Treg cell) responses. The induction of HO-1 can reduce the production of reactive oxygen species, thereby reducing oxidative stress and inflammation. Besides, HO-1 also has an important effect in novel programmed cell death such as pyroptosis and ferroptosis, thereby playing a protective role against diabetes. In conclusion, HO-1 plays a significant role in the occurrence and development of diabetic complications and is closely associated with a variety of complications. HO-1 is anticipated to serve as a novel target for addressing diabetic complications, and it holds promise as a potential therapeutic agent for diabetes and its associated complications. We hope to provide inspiration and ideas for future studies in the mechanism and targets of HO-1 through this review.

2.
Genome Biol ; 25(1): 258, 2024 Oct 08.
Artículo en Inglés | MEDLINE | ID: mdl-39380061

RESUMEN

Precise calling of promiscuous adenosine-to-inosine RNA editing sites from transcriptomic datasets is hindered by DNA mutations and sequencing/mapping errors. Here, we present a stepwise computational framework, called DEMINING, to distinguish RNA editing and DNA mutations directly from RNA sequencing datasets, with an embedded deep learning model named DeepDDR. After transfer learning, DEMINING can also classify RNA editing sites and DNA mutations from non-primate sequencing samples. When applied in samples from acute myeloid leukemia patients, DEMINING uncovers previously underappreciated DNA mutation and RNA editing sites; some associated with the upregulated expression of host genes or the production of neoantigens.


Asunto(s)
Aprendizaje Profundo , Mutación , Edición de ARN , Humanos , Leucemia Mieloide Aguda/genética , Análisis de Secuencia de ARN/métodos
3.
ACS Appl Mater Interfaces ; 16(37): 49003-49012, 2024 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-39226043

RESUMEN

Due to the limited efficacy and evident side effects of traditional chemotherapy drugs attributed to their lack of specificity and selectivity, novel strategies are essential for improving cancer treatment outcomes. Here, we successfully engineered Fe3O4 magnetic nanoparticles coated with zeolitic imidazolate framework-8 (ZIF-8). The resulting nanocomposite (Fe3O4@ZIF-8) demonstrates efficient adsorption of a substantial amount of doxorubicin (DOX) due to the porous nature of ZIF-8. The drug-loaded nanoparticles, Fe3O4@ZIF-8/DOX, exhibit significant accumulation at the tumor site in SW620 colon-cancer-bearing mice when guided by an external magnetic field. Within the acidic microenvironment of the tumor, the ZIF-8 framework collapses, releasing DOX and effectively inducing tumor cell death, thereby inhibiting cancer progression while not causing undesired side effects, as confirmed by a variety of in vitro and in vivo characterizations. In comparison to free DOX, Fe3O4@ZIF-8/DOX nanoparticles show superior efficacy in colon cancer treatment. Our findings suggest that Fe3O4@ZIF-8 holds promise as a carrier for small-molecule drug adsorption and its ferromagnetic properties provide drug targeting capabilities, thereby enhancing therapeutic effects on tumors at the same drug dosage. With excellent biocompatibility, Fe3O4@ZIF-8 demonstrates potential as a drug carrier in targeted cancer chemotherapy. Our work suggests that a combination of magnetic targeting and acid-responsiveness holds great promise for advancing targeted cancer therapy in precision nanomedicine.


Asunto(s)
Neoplasias del Colon , Doxorrubicina , Nanopartículas de Magnetita , Estructuras Metalorgánicas , Doxorrubicina/química , Doxorrubicina/farmacología , Doxorrubicina/uso terapéutico , Animales , Estructuras Metalorgánicas/química , Neoplasias del Colon/tratamiento farmacológico , Neoplasias del Colon/patología , Ratones , Humanos , Nanopartículas de Magnetita/química , Nanopartículas de Magnetita/uso terapéutico , Portadores de Fármacos/química , Línea Celular Tumoral , Zeolitas/química , Ratones Endogámicos BALB C , Antibióticos Antineoplásicos/química , Antibióticos Antineoplásicos/farmacología , Antibióticos Antineoplásicos/uso terapéutico , Imidazoles
4.
Sensors (Basel) ; 24(16)2024 Aug 18.
Artículo en Inglés | MEDLINE | ID: mdl-39205036

RESUMEN

The dispute over the authenticity of video has become a hot topic in judicial practice in recent years. Despite detection methods being updated rapidly, methods for determining authenticity have limitations, especially against high-level forgery. Deleting the integral group of pictures (GOP) length in static scenes could remove key information in the video, leading to unjust sentencing. Anyone can conduct such an operation using publicly available software, thus escaping state-of-the-art detection methods. In this paper, we propose a detection method based on noise transfer matrix analysis. A pyramid structure and a weight learning module are adopted to improve the detection rate and reduce the false positive rate. In total, 80 videos were examined through delicate anti-forensic forgery operations to verify the detection performance of the proposed method and three previously reported methods against anti-forensic forgery operations. In addition, two of the latest learning-based methods were included in our experiments to evaluate the proposed method. The experimental results show that the proposed method significantly improves the detection of frame deletion points compared with traditional and learning-based methods, especially in low false positive rate (FPR) intervals, which is meaningful in forensic science.

5.
J Hazard Mater ; 478: 135577, 2024 Oct 05.
Artículo en Inglés | MEDLINE | ID: mdl-39178774

RESUMEN

Evidence on the link of long-term exposure to ozone (O3) with childhood asthma, rhinitis, conjunctivitis and eczema is inconclusive. We did a population-based cross-sectional survey, including 177,888 children from 173 primary and middle schools in 14 Chinese cities. A satellite-based spatiotemporal model was employed to assess four-year average O3 exposure at both residential and school locations. Information on asthma, allergic rhinitis, eczema and conjunctivitis was collected by a standard questionnaire developed by the American Thoracic Society. We used generalized non-linear and linear mixed models to test the associations. We observed linear exposure-response associations between O3 and all outcomes. The odds ratios of doctor-diagnosed asthma, rhinitis, eczema, and conjunctivitis associated with per interquartile increment in home-school O3 concentration were 1.31 (95 % confidence interval [CI]: 1.28, 1.34), 1.25 (95 %CI: 1.23, 1.28), 1.19 (95 %CI: 1.16, 1.21), and 1.28 (95 %CI: 1.21, 1.34), respectively. Similar associations were observed for asthma-related outcomes including current asthma, wheeze, current wheeze, persistent phlegm, and persistent cough. Moreover, stronger associations were observed among children who were aged > 12 years, physically inactive, and exposed to higher temperature. In conclusion, long-term O3 exposure was associated with higher risks of asthma, allergic rhinitis, conjunctivitis and eczema in children.


Asunto(s)
Contaminantes Atmosféricos , Asma , Ciudades , Conjuntivitis , Eccema , Ozono , Rinitis , Humanos , Ozono/análisis , Ozono/toxicidad , Niño , China/epidemiología , Asma/epidemiología , Asma/inducido químicamente , Eccema/epidemiología , Eccema/inducido químicamente , Masculino , Femenino , Rinitis/epidemiología , Rinitis/inducido químicamente , Contaminantes Atmosféricos/toxicidad , Contaminantes Atmosféricos/análisis , Conjuntivitis/inducido químicamente , Conjuntivitis/epidemiología , Estudios Transversales , Exposición a Riesgos Ambientales/efectos adversos , Adolescente
7.
J Agric Food Chem ; 72(33): 18335-18346, 2024 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-39134474

RESUMEN

Plants convert solar energy and carbon dioxide into organic compounds through photosynthesis. Sucrose is the primary carbonate produced during photosynthesis. Sucrose phosphate synthase (SPS) is the key enzyme controlling sucrose biosynthesis in plants. There are at least three SPS gene families in higher plants, named A, B, and C. However, in monocotyledonous plants from Poaceae, there are at least five SPS gene families, named A, B, C, DIII, and DIV. Each family of SPS genes in different plants shows a divergent expression pattern. So different families of SPS genes participate in diverse biological functions, including sucrose accumulation, plant growth and production, and abiotic stress tolerance. SPS activity in plants is regulated by exogenous factors through gene expression and reversible protein phosphorylation. It is a practicable way to improve crop traits through SPS gene transformation. This work analyzes the cloning, phylogeny, and regulatory mechanism of the SPS gene in plants, reviews its biological function as well as its role in crop improvement, and discusses the challenges and future perspectives. This paper can serve as a reference for further study on plant SPS genes and eventually for crop improvement.


Asunto(s)
Productos Agrícolas , Regulación de la Expresión Génica de las Plantas , Glucosiltransferasas , Proteínas de Plantas , Glucosiltransferasas/genética , Glucosiltransferasas/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Productos Agrícolas/genética , Productos Agrícolas/metabolismo , Productos Agrícolas/crecimiento & desarrollo , Productos Agrícolas/enzimología , Sacarosa/metabolismo , Filogenia , Plantas/genética , Plantas/enzimología , Plantas/metabolismo
8.
Chem Commun (Camb) ; 60(67): 8916-8919, 2024 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-39092584

RESUMEN

A facile cation modulation strategy is proposed for the synthesis of copper/cobalt bimetallic sulfides dispersed on hierarchical carbon nanoflowers, which exhibit excellent oxygen electrocatalysis capacity to drive electrochemiluminescence for cytosensing.

9.
World J Clin Cases ; 12(23): 5308-5312, 2024 Aug 16.
Artículo en Inglés | MEDLINE | ID: mdl-39156095

RESUMEN

In this editorial, we comment on an article by Alhammad et al that was published in a recent issue of the World Journal of Clinical Cases (Manuscript No.: 91134). We specifically focus on the mental health problems caused by coronavirus disease 2019 (COVID-19), their mechanisms, and targeted rehabilitation strategies. Severe acute respiratory syndrome coronavirus 2, via its spike protein, binds to angiotensin-converting enzyme 2 and other receptors prior to infiltrating diverse cells within the central nervous system, including endothelial cells, neurons, astrocytes, and oligodendrocytes, thereby contributing to the development of mental illnesses. Epidemiological data from 2020 underscored the global upsurge in major depressive and anxiety disorders by 27.6% and 25.6%, respectively, during the pandemic. The commented research show that 30% of post-intensive care unit discharge patients with COVID-19 in the Arabic region exhibited Hospital Anxiety and Depression Scale scores that were indicative of anxiety and depression. While acknowledging psychosocial factors, such as grief and loss, it is crucial to recognize the potential neurological impact of the virus through various mechanisms. Accordingly, interventions that encompass dietary measures, health supplements, and traditional Chinese medicine with neuroprotective properties are necessary. This editorial underscores the urgency to implement comprehensive rehabilitation approaches to address the intricate interplay between COVID-19 and mental well-being.

10.
Nat Methods ; 21(9): 1646-1657, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38965442

RESUMEN

Dynamic imaging of genomic loci is key for understanding gene regulation, but methods for imaging genomes, in particular non-repetitive DNAs, are limited. We developed CRISPRdelight, a DNA-labeling system based on endonuclease-deficient CRISPR-Cas12a (dCas12a), with an engineered CRISPR array to track DNA location and motion. CRISPRdelight enables robust imaging of all examined 12 non-repetitive genomic loci in different cell lines. We revealed the confined movement of the CCAT1 locus (chr8q24) at the nuclear periphery for repressed expression and active motion in the interior nucleus for transcription. We uncovered the selective repositioning of HSP gene loci to nuclear speckles, including a remarkable relocation of HSPH1 (chr13q12) for elevated transcription during stresses. Combining CRISPR-dCas12a and RNA aptamers allowed multiplex imaging of four types of satellite DNA loci with a single array, revealing their spatial proximity to the nucleolus-associated domain. CRISPRdelight is a user-friendly and robust system for imaging and tracking genomic dynamics and regulation.


Asunto(s)
Sistemas CRISPR-Cas , Humanos , Sitios Genéticos , Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas/genética , Núcleo Celular/genética , Genómica/métodos , ADN Satélite/genética , Línea Celular
11.
PLoS Biol ; 22(6): e3002680, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38865309

RESUMEN

CRISPR-Cas12a, often regarded as a precise genome editor, still requires improvements in specificity. In this study, we used a GFP-activation assay to screen 14 new Cas12a nucleases for mammalian genome editing, successfully identifying 9 active ones. Notably, these Cas12a nucleases prefer pyrimidine-rich PAMs. Among these nucleases, we extensively characterized Mb4Cas12a obtained from Moraxella bovis CCUG 2133, which recognizes a YYN PAM (Y = C or T). Our biochemical analysis demonstrates that Mb4Cas12a can cleave double-strand DNA across a wide temperature range. To improve specificity, we constructed a SWISS-MODEL of Mb4Cas12a based on the FnCas12a crystal structure and identified 8 amino acids potentially forming hydrogen bonds at the target DNA-crRNA interface. By replacing these amino acids with alanine to disrupt the hydrogen bond, we tested the influence of each mutation on Mb4Cas12a specificity. Interestingly, the F370A mutation improved specificity with minimal influence on activity. Further study showed that Mb4Cas12a-F370A is capable of discriminating single-nucleotide polymorphisms. These new Cas12a orthologs and high-fidelity variants hold substantial promise for therapeutic applications.


Asunto(s)
Alelos , Proteínas Asociadas a CRISPR , Sistemas CRISPR-Cas , Edición Génica , Edición Génica/métodos , Proteínas Asociadas a CRISPR/metabolismo , Proteínas Asociadas a CRISPR/genética , Humanos , Endodesoxirribonucleasas/metabolismo , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/química , Animales , Ingeniería de Proteínas/métodos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/química , Polimorfismo de Nucleótido Simple , Mutación , ADN/metabolismo , ADN/genética , Células HEK293
12.
Sci Bull (Beijing) ; 2024 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-38910106

RESUMEN

Many clustered regularly interspaced short palindromic repeat and CRISPR-associated protein 12b (CRISPR-Cas12b) nucleases have been computationally identified, yet their potential for genome editing remains largely unexplored. In this study, we conducted a GFP-activation assay screening 13 Cas12b nucleases for mammalian genome editing, identifying five active candidates. Candidatus hydrogenedentes Cas12b (ChCas12b) was found to recognize a straightforward WTN (W = T or A) proto-spacer adjacent motif (PAM), thereby dramatically expanding the targeting scope. Upon optimization of the single guide RNA (sgRNA) scaffold, ChCas12b exhibited activity comparable to SpCas9 across a panel of nine endogenous loci. Additionally, we identified nine mutations enhancing ChCas12b specificity. More importantly, we demonstrated that both ChCas12b and its high-fidelity variant, ChCas12b-D496A, enabled allele-specific disruption of genes harboring single nucleotide polymorphisms (SNPs). These data position ChCas12b and its high-fidelity counterparts as promising tools for both fundamental research and therapeutic applications.

13.
J Pharm Biomed Anal ; 246: 116213, 2024 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-38754155

RESUMEN

Triterpenoid saponins, a major bioactive component of liquorice, possess high hydrophilicity and often co-occur with other impurities of similar polarity. Additionally, subtle structural differences of some triterpenoid saponins bring challenges to comprehensive characterisation. In this study, triterpenoid saponins of three Glycyrrhiza species were systematically analysed using rapid resolution liquid chromatography quadrupole time-of-flight mass spectrometry (RRLC-Q-TOF-MS) coupled with mass defect filtering (MDF). Firstly, comprehensive date acquisition was achieved using RRLC-Q-TOF-MS. Secondly, a polygonal MDF method was established by summarizing known and speculated substituents and modifications based on the core structure to rapidly screen potential triterpenoid saponins. Thirdly, based on the fragmentation patterns of reference compounds, an identification strategy for characterisation of triterpenoid saponins was proposed. The strategy divided triterpenoid saponins into three distinct classes. By this strategy, 98 triterpenoid saponins including 10 potential new ones were tentatively characterised. Finally, triterpenoid saponins of three Glycyrrhiza species were further analysed using principle component analysis (PCA) and orthogonality partial least squares discriminant analysis (OPLS-DA). Among these, 18 compounds with variable importance in projections (VIP) > 1.0 and P values < 0.05 were selected to distinguish three Glycyrrhiza species. Overall, our study provided a reference for quality control and rational use of the three species.


Asunto(s)
Glycyrrhiza , Saponinas , Triterpenos , Saponinas/química , Saponinas/análisis , Glycyrrhiza/química , Triterpenos/química , Triterpenos/análisis , Espectrometría de Masas/métodos , Cromatografía Líquida de Alta Presión/métodos , Cromatografía Liquida/métodos , Extractos Vegetales/química
14.
J Colloid Interface Sci ; 669: 886-895, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38749227

RESUMEN

Zinc metal anodes in aqueous electrolytes commonly face challenges such as dendrite growth and undesirable side reactions, limiting their application in the field of aqueous zinc-ion batteries (AZIBs) for energy storage. Drawing inspiration from industrial practices involving molybdenum salt solutions for metal modification, a polyoxometalate solution was formulated as a passivation solution for zinc anodes (referred to as MO solution). The formed passivation layer, referred to as the MO layer, exhibited a uniform and protective nature with a thickness of approximately 10 µm. The experimental results demonstrated that this passivation layer effectively suppressed side reactions at the zinc anode interface, as evidenced by lower corrosion current density for MO-Zn anodes. Additionally, the newly plated Zn was uniformly deposited atop the MO layer, ensuring coating integrity and inhibiting dendrite growth. As a result, under more demanding conditions such as a larger current of 8 mA cm-2, the MO-Zn anode displayed an extended cycle life exceeding 420 h in a symmetric battery, with an overpotential as low as 98 mV. This performance significantly outperformed that of commercially available pure Zn foils (with a cycle life of 60 h and an overpotential of 192 mV). Notably, a self-made Na-doped V2O5 served as the cathode (referred to as NaVO), forming the MO-Zn//NaVO full battery. Even under high current test conditions of 2 A/g, the specific capacity of the MO-Zn//NaVO full battery remained substantial at 152.83 mAh/g after 1000 cycles. Furthermore, pouch batteries assembled with NaVO//MO-Zn successfully illuminated small bulbs. This study offers a viable optimization strategy for AZIB anodes and demonstrates the potential of using polyoxometalate solution for etching zinc anodes to inhibit dendrite growth and interfacial corrosion of zinc metal anodes.

15.
Biosens Bioelectron ; 258: 116335, 2024 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-38710144

RESUMEN

The detection of antibiotics is crucial for safeguarding the environment, ensuring food safety, and promoting human health. However, developing a rapid, convenient, low-cost, and sensitive method for antibiotic detection presents significant challenges. Herein, an aptamer-free biosensor was successfully constructed using upconversion nanoparticles (UCNPs) coated with silk fibroin (SF), based on Förster resonance energy transfer (FRET) and the charge-transfer effect, for detecting roxithromycin (RXM). A synergistic FRET efficiency was achieved by utilizing alizarin red and RXM complexes as energy acceptors, with UCNP as the energy donor, and immobilizing an ultrathin SF protein corona within 10 nm. The biosensor detects RXM in deionized water with high sensitivity primarily through monolayer adsorption, with a detection range of 1.0 nM-141.6 nM and a detection limit as low as 0.68 nM. The performance of this biosensor was compared with the ultra-performance liquid chromatography-mass spectrometry (UPLC-MS/MS) method for detecting antibiotics in river water separately and a strong correlation between the two methods was observed. The biosensor exhibited long-term stability in aqueous solutions (up to 60 d) with no attenuation of fluorescence intensity. Furthermore, the biosensor's applicability extended to the highly sensitive detection of other antibiotics, such as azithromycin. This study introduces a low-cost, eco-friendly, and highly sensitive method for antibiotic detection, with broad potential for future applications in environmental, healthcare, and food-related fields.


Asunto(s)
Antibacterianos , Técnicas Biosensibles , Transferencia Resonante de Energía de Fluorescencia , Límite de Detección , Nanopartículas , Técnicas Biosensibles/métodos , Antibacterianos/análisis , Nanopartículas/química , Transferencia Resonante de Energía de Fluorescencia/métodos , Roxitromicina/análisis , Roxitromicina/química , Humanos , Contaminantes Químicos del Agua/análisis , Fibroínas/química
16.
BMC Complement Med Ther ; 24(1): 161, 2024 Apr 17.
Artículo en Inglés | MEDLINE | ID: mdl-38632548

RESUMEN

BACKGROUND: Polygonum multiflorum (PM), a widely used traditional Chinese medicine herb, is divided into two forms, namely raw polygonum multiflorum (RPM) and polygonum multiflorum praeparata (PMP), according to the processing procedure. Emerging data has revealed the differential hepatotoxicity of RPM and PMP, however, its potential mechanism is still unclear. METHODS: In our study, we investigated the differential hepatotoxicity of RPM and PMP exerted in C57BL/6 mice. First, sera were collected for biochemical analysis and HE staining was applied to examine the morphological alternation of the liver. Then we treated L02 cells with 5 mg / mL of RPM or PMP. The CCK8 and EdU assays were utilized to observe the viability and proliferation of L02 cells. RNA sequencing was performed to explore the expression profile of L02 cells. Western blotting was performed to detect the expression level of ferroptosis-related protein. Flow cytometry was used to evaluate ROS accumulation. RESULTS: In our study, a significant elevation in serum ALT, AST and TBIL levels was investigated in the RMP group, while no significant differences were observed in the PMP group, compared to that of the CON group. HE staining showed punctate necrosis, inflammatory cell infiltration and structural destruction can be observed in the RPM group, which can be significantly attenuated after processing. In addition, we also found RPM could decrease the viability and proliferation capacity of L02 cells, which can be reversed by ferroptosis inhibitor. RNA sequencing data revealed the adverse effect of PM exerted on the liver is closely associated with ferroptosis. Western blotting assay uncovered the protein level of GPX4, HO-1 and FTL was sharply decreased, while the ROS content was dramatically elevated in L02 cells treated with RPM, which can be partially restored after processing. CONCLUSIONS: The hepatotoxicity induced by RPM was significantly lower than the PMP, and its potential mechanism is associated with ferroptosis.


Asunto(s)
Enfermedad Hepática Inducida por Sustancias y Drogas , Efectos Colaterales y Reacciones Adversas Relacionados con Medicamentos , Fallopia multiflora , Polygonum , Animales , Ratones , Fallopia multiflora/química , Polygonum/química , Especies Reactivas de Oxígeno , Ratones Endogámicos C57BL
17.
Huan Jing Ke Xue ; 45(2): 983-991, 2024 Feb 08.
Artículo en Chino | MEDLINE | ID: mdl-38471936

RESUMEN

To control of phosphorus release from soil after farmland inundation around the lake and reservoir, calcium modified biochar (Ca-BC) was prepared using the coprecipitation method. Through X-ray photoelectron spectroscopy (XPS), X-ray polycrystalline powder diffraction (XRD), adsorption experiments, and simulated culture experiments, the effects of Ca-based biochar on the fraction of soil phosphorus (P) and its stabilization mechanism were studied. The results showed that the adsorption process of Ca-based modified biochar conformed to Langmuir (R2 = 0.940) and the first-order adsorption kinetic model (R2 = 0.961), indicating that the P adsorption was a single-layer adsorption dominated by chemical action, and the maximum adsorption capacity was 267.93 mg·g-1. The simulated culture experiment indicated that when the modified biochar was 1%, the exchangeable fraction of phosphorus in the soil decreased from 7.42% to 4.59%. The XRD results demonstrated that Ca3(PO4)2 and hydroxyapatite absorption peaks appeared after adsorbed phosphorus on biochar, which proved that phosphate formed a relatively stable crystal precipitation. As shown in the XPS spectrum analysis, the carbonyl functional groups participated in the phosphorus fixation process, which improved the adsorption capacity of biochar for phosphorus. In general, when the concentration of Ca-based modified biochar was greater than 1%, it had a good fixation capacity for phosphorus release and had potential application value for controlling phosphorus release in soil.

18.
Nat Commun ; 15(1): 2377, 2024 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-38493213

RESUMEN

Tumor cells must rewire nucleotide synthesis to satisfy the demands of unbridled proliferation. Meanwhile, they exhibit augmented reactive oxygen species (ROS) production which paradoxically damages DNA and free deoxy-ribonucleoside triphosphates (dNTPs). How these metabolic processes are integrated to fuel tumorigenesis remains to be investigated. MYC family oncoproteins coordinate nucleotide synthesis and ROS generation to drive the development of numerous cancers. We herein perform a Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-based functional screen targeting metabolic genes and identified nudix hydrolase 1 (NUDT1) as a MYC-driven dependency. Mechanistically, MYC orchestrates the balance of two metabolic pathways that act in parallel, the NADPH oxidase 4 (NOX4)-ROS pathway and the Polo like kinase 1 (PLK1)-NUDT1 nucleotide-sanitizing pathway. We describe LC-1-40 as a potent, on-target degrader that depletes NUDT1 in vivo. Administration of LC-1-40 elicits excessive nucleotide oxidation, cytotoxicity and therapeutic responses in patient-derived xenografts. Thus, pharmacological targeting of NUDT1 represents an actionable MYC-driven metabolic liability.


Asunto(s)
Nucleótidos , Hidrolasas Nudix , Humanos , Especies Reactivas de Oxígeno/metabolismo , Oxidación-Reducción , Nucleótidos/metabolismo
19.
Neural Netw ; 174: 106240, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38521019

RESUMEN

Representation learning for dynamic networks is designed to learn the low-dimensional embeddings of nodes that can well preserve the snapshot structure, properties and temporal evolution of dynamic networks. However, current dynamic network representation learning methods tend to focus on estimating or generating observed snapshot structures, paying excessive attention to network details, and disregarding distinctions between snapshots with larger time intervals, resulting in less robustness for sparse or noisy networks. To alleviate these challenges, this paper proposes a contrastive mechanism for temporal representation learning on dynamic networks, inspired by the success of contrastive learning in visual and static network representation learning. This paper proposes a novel Dynamic Network Contrastive representation Learning (DNCL) model. Specifically, contrast objective functions are constructed using intra-snapshot and inter-snapshot contrasts to capture the network topology, node feature information, and network evolution information, respectively. Rather than estimating or generating ground-truth network features, the proposed approach maximizes mutual information between nodes from different time steps and views generated. The experimental results of link prediction, node classification, and clustering on several real-world and synthetic networks demonstrate the superiority of DNCL over state-of-the-art methods, indicating the effectiveness of the proposed approach for dynamic network representation learning.


Asunto(s)
Aprendizaje , Análisis por Conglomerados
20.
Int Immunopharmacol ; 131: 111785, 2024 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-38479158

RESUMEN

Diabetic nephropathy (DN) is a significant clinical microvascular complication associated with diabetes mellitus (DM), and end-stage diabetes giving rise to kidney failure is developing into the major etiological factor of chronic kidney failure. Dapagliflozin is reported to limit podocyte damage in DM, which has proven to protect against renal failure. Mounting evidence has demonstrated that pyroptosis is associated with DM progression. Nevertheless, whether pyroptosis causes DN and the underlying molecular pathways remain obscure. In this study, we aimed to explore the antipyroptotic attributes of dapagliflozin and elucidate the underlying mechanisms of kidney damage in diabetes. In vivo, experiments were conducted in streptozotocin (STZ)-induced type 2 diabetic mice, which were administered dapagliflozin via gavage for 6 weeks. Subsequently, the specific organizational characteristics and expression of pyroptosis-related genes were evaluated. Intragastric dapagliflozin administration markedly reduced renal tissue injury. Meanwhile, dapagliflozin also attenuated the expression level of pyroptosis associated genes, including ASC, cleaved Caspase-1, GSDMD N-termini, NLRP3, IL-18, and IL-1ß in renal tissue of dapagliflozin-treated animals. Similar antipyroptotic effects were observed in palmitic acid (PA)-treated mouse podocytes. We also found that heme oxygenase 1 (HO-1) enhanced the protection of mouse podocyte clone 5 cells (MPC5). Moreover, miR-155-5p inhibition increased pyroptosis in PA-treated MPC5 cells, suggesting that miR-155-5p acts as an endogenous stimulator that increases HO-1 expression and reduces pyroptosis. Hence, our findings imply that dapagliflozin inhibits podocyte pyroptosis via the miR-155-5p/HO-1/NLRP3 axis in DM. Furthermore, dapagliflozin substitution may be regarded as an effective strategy for preventing pyroptosis in the kidney, including a therapeutic option for treating pyroptosis-related DN.


Asunto(s)
Compuestos de Bencidrilo , Diabetes Mellitus Experimental , Nefropatías Diabéticas , Glucósidos , MicroARNs , Podocitos , Insuficiencia Renal , Animales , Ratones , Hemo-Oxigenasa 1/genética , Diabetes Mellitus Experimental/tratamiento farmacológico , Proteína con Dominio Pirina 3 de la Familia NLR/genética , Piroptosis , Riñón , Nefropatías Diabéticas/tratamiento farmacológico , MicroARNs/genética
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