Highly efficient and automated extraction of DNA from human remains using a modified EZ1 protocol.

Bones and teeth often represent the only sources of DNA available for identifying human remains. DNA in bones and teeth is generally better preserved than that in soft tissues because of the presence of hard connective tissue with a high level of calcium. Because of the extensive mineralisation, the choice of an efficient DNA extraction procedure is important to minimise the sampling of a high level of minerals and to remove polymerase chain reaction (PCR) inhibitors. Some protocols are available for DNA extraction from bones and teeth as part of the Qiagen EZ1 DNA Investigator Kit using the EZ1 Advanced XL automated purification platform. To improve the efficiency of DNA extraction from skeletal remains, the present study focuses on a modification to these already available protocols. In this study, different bones and teeth collected between 1 and 50 years after death were subjected to DNA extraction using the standard EZ1 protocol, a supplementary protocol, and a modified protocol. The modified approach included a decalcification step, whereas the Qiagen protocols worked directly on non-decalcified powder. In all three procedures, 150 mg samples were used for DNA extraction. We evaluated the quantity of DNA recovered from samples, the presence of any PCR inhibitors co-extracted, the level of DNA degradation, the quality of short tandem repeat (STR) profiles, and the reproducibility of the modified procedure. When compared with the other protocols, the modified protocol resulted in the best recovery of DNA that was free of PCR inhibitors. Additionally, the STR profiles were reliable and of high quality. In our opinion, the decalcification step increases DNA recovery by softening tissues, which allows lysis solutions to act more effectively. Furthermore, the use of two lysis solutions and the variation added to the EZ1 purification step allow for DNA recovery with quality and quantity superior to those of the previously available Qiagen-based protocols. These findings may be helpful solutions to the problems commonly encountered when dealing with difficult samples, such as bones and teeth.Key pointsBones and teeth often represent the only sources of DNA for identifying human remains.The choice of an efficient DNA extraction procedure is important for maximizing DNA recovery and removing PCR inhibitors.This study focuses on modifications to the previously available Qiagen-based protocols.The modified protocol enabled the best recovery of DNA, and both quality and quantity were superior to those of the previously available Qiagen-based protocols.The STR profiles obtained from samples extracted using the modified protocol were reliable and of high quality.

Impact shock origin of diamonds in ureilite meteorites.

The origin of diamonds in ureilite meteorites is a timely topic in planetary geology as recent studies have proposed their formation at static pressures >20 GPa in a large planetary body, like diamonds formed deep within Earth's mantle. We investigated fragments of three diamond-bearing ureilites (two from the Almahata Sitta polymict ureilite and one from the NWA 7983 main group ureilite). In NWA 7983 we found an intimate association of large monocrystalline diamonds (up to at least 100 µm), nanodiamonds, nanographite, and nanometric grains of metallic iron, cohenite, troilite, and likely schreibersite. The diamonds show a striking texture pseudomorphing inferred original graphite laths. The silicates in NWA 7983 record a high degree of shock metamorphism. The coexistence of large monocrystalline diamonds and nanodiamonds in a highly shocked ureilite can be explained by catalyzed transformation from graphite during an impact shock event characterized by peak pressures possibly as low as 15 GPa for relatively long duration (on the order of 4 to 5 s). The formation of "large" (as opposed to nano) diamond crystals could have been enhanced by the catalytic effect of metallic Fe-Ni-C liquid coexisting with graphite during this shock event. We found no evidence that formation of micrometer(s)-sized diamonds or associated Fe-S-P phases in ureilites require high static pressures and long growth times, which makes it unlikely that any of the diamonds in ureilites formed in bodies as large as Mars or Mercury.

Graphite-Based Geothermometry on Almahata Sitta Ureilitic Meteorites.

The thermal history of carbon phases, including graphite and diamond, in the ureilite meteorites has implications for the formation, igneous evolution, and impact disruption of their parent body early in the history of the Solar System. Geothermometry data were obtained by micro-Raman spectroscopy on graphite in Almahata Sitta (AhS) ureilites AhS 72, AhS 209b and AhS A135A from the University of Khartoum collection. In these samples, graphite shows G-band peak centers between 1578 and 1585 cm-1 and the full width at half maximum values correspond to a crystallization temperature of 1266 °C for graphite for AhS 209b, 1242 °C for AhS 72, and 1332 °C for AhS A135A. Recent work on AhS 72 and AhS 209b has shown graphite associated with nanodiamonds and argued that this assemblage formed due to an impact-event. Our samples show disordered graphite with a crystalline domain size ranging between about 70 and 140 nm. The nanometric grain-size of the recrystallized graphite indicates that it records a shock event and thus argues that the temperatures we obtained are related to such an event, rather than the primary igneous processing of the ureilite parent body.

Women in Forensics: An international overview.

Forensic science plays a crucial role in criminal justice. In the last few years, due to great advances in technologies and the effect of many TV shows, movies, and true crime podcasts, there has been an increased interest to forensic science by both students and professionals. In particular, forensic science appears to be a very exciting career for women, whose numbers greatly exceed men's in the field. The present study is an international overview about the role of women in forensic science with a special look to awards and international associations promoting and recognising the female role in forensic disciplines.

The molecular characterization of a depurinated trial DNA sample can be a model to understand the reliability of the results in forensic genetics.

The role of DNA damage in PCR processivity/fidelity is a relevant topic in molecular investigation of aged/forensic samples. In order to reproduce one of the most common lesions occurring in postmortem tissues, a new protocol based on aqueous hydrolysis of the DNA was developed in vitro. Twenty-five forensic laboratories were then provided with 3.0 µg of a trial sample (TS) exhibiting, in mean, the loss of 1 base of 20, and a molecular weight below 300 bp. Each participating laboratory could freely choose any combination of methods, leading to the quantification and to the definition of the STR profile of the TS, through the documentation of each step of the analytical approaches selected. The results of the TS quantification by qPCR showed significant differences in the amount of DNA recorded by the participating laboratories using different commercial kits. These data show that only DNA quantification "relative" to the used kit (probe) is possible, being the "absolute" amount of DNA inversely related to the length of the target region (r(2) = 0.891). In addition, our results indicate that the absence of a shared stable and certified reference quantitative standard is also likely involved. STR profiling was carried out selecting five different commercial kits and amplifying the TS for a total number of 212 multiplex PCRs, thus representing an interesting overview of the different analytical protocols used by the participating laboratories. Nine laboratories decided to characterize the TS using a single kit, with a number of amplifications varying from 2 to 12, obtaining only partial STR profiles. Most of the participants determined partial or full profiles using a combination of two or more kits, and a number of amplifications varying from 2 to 27. The performance of each laboratory was described in terms of number of correctly characterized loci, dropped-out markers, unreliable genotypes, and incorrect results. The incidence of unreliable and incorrect genotypes was found to be higher for participants carrying out a limited number of amplifications, insufficient to define the correct genotypes from damaged DNA samples such as the TS. Finally, from a dataset containing about 4500 amplicons, the frequency of PCR artifacts (allele dropout, allele drop-in, and allelic imbalance) was calculated for each kit showing that the new chemistry of the kits is not able to overcome the concern of template-related factors. The results of this collaborative exercise emphasize the advantages of using a standardized degraded DNA sample in the definition of which analytical parameters are critical for the outcome of the STR profiles.

X-chromosome SNP analyses in 11 human Mediterranean populations show a high overall genetic homogeneity except in North-west Africans (Moroccans).

BACKGROUND: Due to its history, with a high number of migration events, the Mediterranean basin represents a challenging area for population genetic studies. A large number of genetic studies have been carried out in the Mediterranean area using different markers but no consensus has been reached on the genetic landscape of the Mediterranean populations. In order to further investigate the genetics of the human Mediterranean populations, we typed 894 individuals from 11 Mediterranean populations with 25 single-nucleotide polymorphisms (SNPs) located on the X-chromosome. RESULTS: A high overall homogeneity was found among the Mediterranean populations except for the population from Morocco, which seemed to differ genetically from the rest of the populations in the Mediterranean area. A very low genetic distance was found between populations in the Middle East and most of the western part of the Mediterranean Sea.A higher migration rate in females versus males was observed by comparing data from X-chromosome, mt-DNA and Y-chromosome SNPs both in the Mediterranean and a wider geographic area.Multilocus association was observed among the 25 SNPs on the X-chromosome in the populations from Ibiza and Cosenza. CONCLUSION: Our results support both the hypothesis of (1) a reduced impact of the Neolithic Wave and more recent migration movements in NW-Africa, and (2) the importance of the Strait of Gibraltar as a geographic barrier. In contrast, the high genetic homogeneity observed in the Mediterranean area could be interpreted as the result of the Neolithic wave caused by a large demic diffusion and/or more recent migration events. A differentiated contribution of males and females to the genetic landscape of the Mediterranean area was observed with a higher migration rate in females than in males. A certain level of background linkage disequilibrium in populations in Ibiza and Cosenza could be attributed to their demographic background.

Validation of a large Italian Database of 15 STR loci.

Results from a collaborative exercise with proficiency testing conducted by 20 Italian laboratories on the 15 loci included in the Identifiler kit were analyzed by allele sharing methods and by standard population genetics tests. The validated database, including about 1500 subjects, was merged with that of a previous exercise conducted on nine loci, and the resulting allele frequencies, subdivided by Italian region, were published on-line.

Genetic study of 11 Y-STRs in the populations of Reggio Calabria, Catanzaro, Cosenza (Calabria--South of Italy).

The ability to identify male-specific DNA renders Y-chromosomal STR systems an invaluable help in cases of rape, other sexual assault as well as in kinship testing. The "PowerPlex Y System" is a recent kit by Promega, that co-amplifies the repeat regions of 11 Y-STRs loci. In the present study, we analyzed the allelic distribution of Y-STRs loci in around 300 unrelated males belonging to the three populations of Calabria region.