Testing the involvement of low-level visual representations during spoken word processing with non-Western students and meditators practicing Sudarshan Kriya Yoga.

Previous studies, using the Continuous Flash Suppression (CFS) paradigm, observed that (Western) university students are better able to detect otherwise invisible pictures of objects when they are presented with the corresponding spoken word shortly before the picture appears. Here we attempted to replicate this effect with non-Western university students in Goa (India). A second aim was to explore the performance of (non-Western) meditators practicing Sudarshan Kriya Yoga in Goa in the same task. Some previous literature suggests that meditators may excel in some tasks that tap visual attention, for example by exercising better endogenous and exogenous control of visual awareness than non-meditators. The present study replicated the finding that congruent spoken cue words lead to significantly higher detection sensitivity than incongruent cue words in non-Western university students. Our exploratory meditator group also showed this detection effect but both frequentist and Bayesian analyses suggest that the practice of meditation did not modulate it. Overall, our results provide further support for the notion that spoken words can activate low-level category-specific visual features that boost the basic capacity to detect the presence of a visual stimulus that has those features. Further research is required to conclusively test whether meditation can modulate visual detection abilities in CFS and similar tasks.

Novel deep learning framework for detection of epileptic seizures using EEG signals.

Introduction: Epilepsy is a chronic neurological disorder characterized by abnormal electrical activity in the brain, often leading to recurrent seizures. With 50 million people worldwide affected by epilepsy, there is a pressing need for efficient and accurate methods to detect and diagnose seizures. Electroencephalogram (EEG) signals have emerged as a valuable tool in detecting epilepsy and other neurological disorders. Traditionally, the process of analyzing EEG signals for seizure detection has relied on manual inspection by experts, which is time-consuming, labor-intensive, and susceptible to human error. To address these limitations, researchers have turned to machine learning and deep learning techniques to automate the seizure detection process. Methods: In this work, we propose a novel method for epileptic seizure detection, leveraging the power of 1-D Convolutional layers in combination with Bidirectional Long Short-Term Memory (LSTM) and Gated Recurrent Unit (GRU) and Average pooling Layer as a single unit. This unit is repeatedly used in the proposed model to extract the features. The features are then passed to the Dense layers to predict the class of the EEG waveform. The performance of the proposed model is verified on the Bonn dataset. To assess the robustness and generalizability of our proposed architecture, we employ five-fold cross-validation. By dividing the dataset into five subsets and iteratively training and testing the model on different combinations of these subsets, we obtain robust performance measures, including accuracy, sensitivity, and specificity. Results: Our proposed model achieves an accuracy of 99-100% for binary classifications into seizure and normal waveforms, 97.2%-99.2% accuracy for classifications into normal-interictal-seizure waveforms, 96.2%-98.4% accuracy for four class classification and accuracy of 95.81%-98% for five class classification. Discussion: Our proposed models have achieved significant improvements in the performance metrics for the binary classifications and multiclass classifications. We demonstrate the effectiveness of the proposed architecture in accurately detecting epileptic seizures from EEG signals by using EEG signals of varying lengths. The results indicate its potential as a reliable and efficient tool for automated seizure detection, paving the way for improved diagnosis and management of epilepsy.

Decoding the neural signatures of valence and arousal from portable EEG headset.

Emotion classification using electroencephalography (EEG) data and machine learning techniques have been on the rise in the recent past. However, past studies use data from medical-grade EEG setups with long set-up times and environment constraints. This paper focuses on classifying emotions on the valence-arousal plane using various feature extraction, feature selection, and machine learning techniques. We evaluate different feature extraction and selection techniques and propose the optimal set of features and electrodes for emotion recognition. The images from the OASIS image dataset were used to elicit valence and arousal emotions, and the EEG data was recorded using the Emotiv Epoc X mobile EEG headset. The analysis is carried out on publicly available datasets: DEAP and DREAMER for benchmarking. We propose a novel feature ranking technique and incremental learning approach to analyze performance dependence on the number of participants. Leave-one-subject-out cross-validation was carried out to identify subject bias in emotion elicitation patterns. The importance of different electrode locations was calculated, which could be used for designing a headset for emotion recognition. The collected dataset and pipeline are also published. Our study achieved a root mean square score (RMSE) of 0.905 on DREAMER, 1.902 on DEAP, and 2.728 on our dataset for valence label and a score of 0.749 on DREAMER, 1.769 on DEAP, and 2.3 on our proposed dataset for arousal label.

Reinforcement learning and its connections with neuroscience and psychology.

Reinforcement learning methods have recently been very successful at performing complex sequential tasks like playing Atari games, Go and Poker. These algorithms have outperformed humans in several tasks by learning from scratch, using only scalar rewards obtained through interaction with their environment. While there certainly has been considerable independent innovation to produce such results, many core ideas in reinforcement learning are inspired by phenomena in animal learning, psychology and neuroscience. In this paper, we comprehensively review a large number of findings in both neuroscience and psychology that evidence reinforcement learning as a promising candidate for modeling learning and decision making in the brain. In doing so, we construct a mapping between various classes of modern RL algorithms and specific findings in both neurophysiological and behavioral literature. We then discuss the implications of this observed relationship between RL, neuroscience and psychology and its role in advancing research in both AI and brain science.

Tracking the Progression and Influence of Beta-Amyloid Plaques Using Percolation Centrality and Collective Influence Algorithm: A Study Using PET Images.

Background: The study of brain networks, particularly the spread of disease, is made easier thanks to the network theory. The aberrant accumulation of beta-amyloid plaques and tau protein tangles in Alzheimer's disease causes disruption in brain networks. The evaluation scores, such as the mini-mental state examination (MMSE) and neuropsychiatric inventory questionnaire, which provide a clinical diagnosis, are affected by this build-up. Purpose: The percolation of beta-amyloid/tau tangles and their impact on cognitive tests are still unspecified. Methods: Percolation centrality could be used to investigate beta-amyloid migration as a characteristic of positron emission tomography (PET)-image-based networks. The PET-image-based network was built utilizing a public database containing 551 scans published by the Alzheimer's Disease Neuroimaging Initiative. Each image in the Julich atlas has 121 zones of interest, which are network nodes. Furthermore, the influential nodes for each scan are computed using the collective influence algorithm. Results: For five nodal metrics, analysis of variance (ANOVA; P < .05) reveals the region of interest (ROI) in gray matter (GM) Broca's area for Pittsburgh compound B (PiB) tracer type. The GM hippocampus area is significant for three nodal metrics in the case of florbetapir (AV45). Pairwise variance analysis of the clinical groups reveals five to twelve statistically significant ROIs for AV45 and PiB, respectively, that can distinguish between pairs of clinical situations. Based on multivariate linear regression, the MMSE is a trustworthy evaluation tool. Conclusion: Percolation values suggest that around 50 of the memory, visual-spatial skills, and language ROIs are critical to the percolation of beta-amyloids within the brain network when compared to the other extensively used nodal metrics. The anatomical areas rank higher with the advancement of the disease, according to the collective influence algorithm.

Acoustic and Language Based Deep Learning Approaches for Alzheimer's Dementia Detection From Spontaneous Speech.

Current methods for early diagnosis of Alzheimer's Dementia include structured questionnaires, structured interviews, and various cognitive tests. Language difficulties are a major problem in dementia as linguistic skills break down. Current methods do not provide robust tools to capture the true nature of language deficits in spontaneous speech. Early detection of Alzheimer's Dementia (AD) from spontaneous speech overcomes the limitations of earlier approaches as it is less time consuming, can be done at home, and is relatively inexpensive. In this work, we re-implement the existing NLP methods, which used CNN-LSTM architectures and targeted features from conversational transcripts. Our work sheds light on why the accuracy of these models drops to 72.92% on the ADReSS dataset, whereas, they gave state of the art results on the DementiaBank dataset. Further, we build upon these language input-based recurrent neural networks by devising an end-to-end deep learning-based solution that performs a binary classification of Alzheimer's Dementia from the spontaneous speech of the patients. We utilize the ADReSS dataset for all our implementations and explore the deep learning-based methods of combining acoustic features into a common vector using recurrent units. Our approach of combining acoustic features using the Speech-GRU improves the accuracy by 2% in comparison to acoustic baselines. When further enriched by targeted features, the Speech-GRU performs better than acoustic baselines by 6.25%. We propose a bi-modal approach for AD classification and discuss the merits and opportunities of our approach.

EEG-based classification of bilingual unspoken speech using ANN.

The ability to interpret unspoken or imagined speech through electroencephalography (EEG) is of therapeutic interest for people suffering from speech disorders and `lockedin' syndrome. It is also useful for brain-computer interface (BCI) techniques not involving articulatory actions. Previous work has involved using particular words in one chosen language and training classifiers to distinguish between them. Such studies have reported accuracies of 40-60% and are not ideal for practical implementation. Furthermore, in today's multilingual society, classifiers trained in one language alone might not always have the desired effect. To address this, we present a novel approach to improve accuracy of the current model by combining bilingual interpretation and decision making. We collect data from 5 subjects with Hindi and English as primary and secondary languages respectively and ask them 20 `Yes'/`No' questions (`Haan'/`Na' in Hindi) in each language. We choose sensors present in regions important to both language processing and decision making. Data is preprocessed, and Principal Component Analysis (PCA) is carried out to reduce dimensionality. This is input to Support Vector Machine (SVM), Random Forest (RF), AdaBoost (AB), and Artificial Neural Networks (ANN) classifiers for prediction. Experimental results reveal best accuracy of 85.20% and 92.18% for decision and language classification respectively using ANN. Overall accuracy of bilingual speech classification is 75.38%.

Disruption of cell wall fatty acid biosynthesis in Mycobacterium tuberculosis using a graph theoretic approach.

Fatty acid biosynthesis of Mycobacterium tuberculosis was analyzed using graph theory and influential (impacting) proteins were identified. The graphs (digraphs) representing this biological network provide information concerning the connectivity of each protein or metabolite in a given pathway, providing an insight into the importance of various components in the pathway, and this can be quantitatively analyzed. Using a graph theoretic algorithm, the most influential set of proteins (sets of {1, 2, 3}, etc.), which when eliminated could cause a significant impact on the biosynthetic pathway, were identified. This set of proteins could serve as drug targets. In the present study, the metabolic network of Mycobacterium tuberculosis was constructed and the fatty acid biosynthesis pathway was analyzed for potential drug targeting. The metabolic network was constructed using the KEGG LIGAND database and subjected to graph theoretical analysis. The nearness index of a protein was used to determine the influence of the said protein on other components in the network, allowing the proteins in a pathway to be ordered according to their nearness indices. A method for identifying the most strategic nodes to target for disrupting the metabolic networks is proposed, aiding the development of new drugs to combat this deadly disease.

Identification of distant co-evolving residues in antigen 85C from Mycobacterium tuberculosis using statistical coupling analysis of the esterase family proteins.

A fundamental goal in cellular signaling is to understand allosteric communication, the process by which signals originating at one site in a protein propagate reliably to affect distant functional sites. The general principles of protein structure that underlie this process remain unknown. Statistical coupling analysis (SCA) is a statistical technique that uses evolutionary data of a protein family to measure correlation between distant functional sites and suggests allosteric communication. In proteins, very distant and small interactions between collections of amino acids provide the communication which can be important for signaling process. In this paper, we present the SCA of protein alignment of the esterase family (pfam ID: PF00756) containing the sequence of antigen 85C secreted by Mycobacterium tuberculosis to identify a subset of interacting residues. Clustering analysis of the pairwise correlation highlighted seven important residue positions in the esterase family alignments. These residues were then mapped on the crystal structure of antigen 85C (PDB ID: 1DQZ). The mapping revealed correlation between 3 distant residues (Asp38, Leu123 and Met125) and suggests allosteric communication between them. This information can be used for a new drug against this fatal disease.