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1.
J Labelled Comp Radiopharm ; 64(5): 198-208, 2021 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-33314295

RESUMEN

New 18 F-labeled nonvolatile aldehyde prosthetic groups derived from [18 F]F-Py-TFP and spirocyclic iodonium (III)ylide precursors for late stage 18 F-labeling were developed. These precursors were characterized, 18 F-labeled, and compared in reactivity for oxime coupling. Oxime coupling was performed on an amino-oxy modified inhibited factor VII (FVIIai-ONH2 ) in low concentration to prove the applicability of the proposed method.


Asunto(s)
Oximas
2.
Bioconjug Chem ; 30(3): 775-784, 2019 03 20.
Artículo en Inglés | MEDLINE | ID: mdl-30676028

RESUMEN

A nonvolatile fluorine-18 aldehyde prosthetic group was developed from [18F]SFB, and used for site-specific labeling of active site inhibited factor VII (FVIIai). FVIIai has a high affinity for tissue factor (TF), a transmembrane protein involved in angiogenesis, proliferation, cell migration, and survival of cancer cells. A hydroxylamine N-glycan modified FVIIai (FVIIai-ONH2) was used for oxime coupling with the aldehyde [18F]2 under mild and optimized conditions in an isolated RCY of 4.7 ± 0.9%, and a synthesis time of 267 ± 5 min (from EOB). Retained binding and specificity of the resulting [18F]FVIIai to TF was shown in vitro. TF-expression imaging capability was evaluated by in vivo PET/CT imaging in a pancreatic human xenograft cancer mouse model. The conjugate showed exceptional stability in plasma (>95% at 4 h) and a binding fraction of 90%. In vivo PET/CT imaging showed a mean tumor uptake of 3.8 ± 0.2% ID/g at 4 h post-injection, a comparable uptake in liver and kidneys, and low uptake in normal tissues. In conclusion, FVIIai was labeled with fluorine-18 at the N-glycan chain without affecting TF binding. In vitro specificity and a good in vivo imaging contrast at 4 h postinjection was demonstrated.


Asunto(s)
Aldehídos/química , Factor VII/antagonistas & inhibidores , Radioisótopos de Flúor/química , Oximas/química , Animales , Sitios de Unión , Dominio Catalítico , Ciclización , Ratones , Tomografía Computarizada por Tomografía de Emisión de Positrones , Tromboplastina/metabolismo , Distribución Tisular , Agua
3.
Bioconjug Chem ; 29(9): 3129-3143, 2018 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-30168709

RESUMEN

The present work describes a series of human growth hormone (hGH) albumin binder conjugates with an extended in vivo half-life. A broad range of different conjugates were studied by varying the albumin binder structure and conjugation site. Conjugates were conveniently obtained by reductive alkylation or by alkylation to introduced cysteines using functionalized albumin-binding side chains. In vitro and in vivo profiling provided the basis for identification of position L101C in human growth hormone as the most optimal position for conjugation, where both a sufficient level of receptor binding and a suitably long half-life could yield a molecule with potential for a once-weekly dosing regimen.


Asunto(s)
Albúminas/metabolismo , Hormona de Crecimiento Humana/metabolismo , Alquilación , Animales , Área Bajo la Curva , Semivida , Oxidación-Reducción , Unión Proteica , Ratas , Ratas Sprague-Dawley
4.
Bioconjug Chem ; 29(1): 117-125, 2018 01 17.
Artículo en Inglés | MEDLINE | ID: mdl-29206443

RESUMEN

A method for site-specific radiolabeling of the serine protease active site inhibited factor seven (FVIIai) with 64Cu has been applied using a biorthogonal click reaction. FVIIai binds to tissue factor (TF), a trans-membrane protein involved in hemostasis, angiogenesis, proliferation, cell migration, and survival of cancer cells. First a single azide moiety was introduced in the active site of this 50 kDa protease. Then a NOTA moiety was introduced via a strain promoted azide-alkyne reaction and the corresponding conjugate was labeled with 64Cu. Binding to TF and the stability was evaluated in vitro. TF targeting capability of the radiolabeled conjugate was tested in vivo by positron emission tomography (PET) imaging in pancreatic human xenograft cancer mouse models with various TF expressions. The conjugate showed good stability (>91% at 16 h), an immunoreactivity of 93.5%, and a mean tumor uptake of 2.1 ± 0.2%ID/g at 15 h post injection. In conclusion, FVIIai was radiolabeled with 64Cu in single well-defined position of the protein. This method can be utilized to prepare conjugates from serine proteases with the label at a specific position.


Asunto(s)
Azidas/química , Química Clic/métodos , Radioisótopos de Cobre/química , Factor VII/química , Neoplasias Pancreáticas/diagnóstico por imagen , Serina Proteasas/química , Tromboplastina/análisis , Animales , Dominio Catalítico , Línea Celular Tumoral , Factor VII/farmacología , Femenino , Compuestos Heterocíclicos/química , Compuestos Heterocíclicos con 1 Anillo , Humanos , Marcaje Isotópico/métodos , Ratones , Ratones Desnudos , Tomografía Computarizada por Tomografía de Emisión de Positrones/métodos , Serina Proteasas/farmacología
5.
Growth Horm IGF Res ; 35: 8-16, 2017 08.
Artículo en Inglés | MEDLINE | ID: mdl-28595133

RESUMEN

OBJECTIVE: Somapacitan is an albumin-binding growth hormone derivative intended for once weekly administration, currently in clinical development for treatment of adult as well as juvenile GH deficiency. Nonclinical in vivo pharmacological characterisation of somapacitan was performed to support the clinical trials. Here we present the pharmacokinetic and pharmacodynamic effects of somapacitan in rats, minipigs, and cynomolgus monkeys. METHODS: Pharmacokinetic studies investigating exposure, absorption, clearance, and bioavailability after single intravenous (i.v.) and subcutaneous (s.c.) administration were performed in all species. A dose-response study with five dose levels and a multiple dose pharmacodynamic study with four once weekly doses was performed in hypophysectomised rats to evaluate the effect of somapacitan on growth and IGF-I production. RESULTS: Pharmacokinetic profiles indicated first order absorption from the subcutaneous tissue after s.c. injections for somapacitan in all three species. Apparent terminal half-lives were 5-6h in rats, 10-12h in minipigs, and 17-20h in monkeys. Somapacitan induced a dose-dependent growth in hypophysectomised rats (p<0.001) and an increase in plasma IGF-I levels in rats (p<0.01), minipigs (p<0.01), and cynomolgus monkeys (p<0.05) after single dose administration. Multiple once weekly dosing of somapacitan in hypophysectomised rats induced a step-wise increase in body weight with an initial linear phase the first 3-4days in each dosing interval (p<0.001). CONCLUSION: The nonclinical pharmacokinetic and pharmacodynamic studies of somapacitan showed similar pharmacokinetic properties, with no absorption-limited elimination, increased clearance and increased and sustained levels of IGF-I in plasma for up to 10days after a single dose administration in all three species. Somapacitan induced a dose-dependent increase in body weight and IGF-I levels in hypophysectomised rats. Multiple dosing of somapacitan in hypophysectomised rats suggested a linear growth for the first 3-4days in each weekly dosing interval, whereas daily hGH dosing showed linear growth for approximately two weeks before reaching a plateau level.


Asunto(s)
Albúminas/metabolismo , Hormona de Crecimiento Humana/farmacocinética , Proteínas Recombinantes/farmacocinética , Albúminas/farmacocinética , Animales , Relación Dosis-Respuesta a Droga , Evaluación Preclínica de Medicamentos , Enanismo Hipofisario/tratamiento farmacológico , Hormona de Crecimiento Humana/metabolismo , Macaca fascicularis , Masculino , Unión Proteica , Ratas , Ratas Sprague-Dawley , Proteínas Recombinantes/metabolismo , Porcinos , Porcinos Enanos
6.
Nat Biotechnol ; 33(8): 842-4, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-26192319

RESUMEN

Production of glycoprotein therapeutics in Chinese hamster ovary (CHO) cells is limited by the cells' generic capacity for N-glycosylation, and production of glycoproteins with desirable homogeneous glycoforms remains a challenge. We conducted a comprehensive knockout screen of glycosyltransferase genes controlling N-glycosylation in CHO cells and constructed a design matrix that facilitates the generation of desired glycosylation, such as human-like α2,6-linked sialic acid capping. This engineering approach will aid the production of glycoproteins with improved properties and therapeutic potential.


Asunto(s)
Glicoproteínas , Ingeniería de Proteínas/métodos , Proteínas Recombinantes , Animales , Células CHO , Cricetinae , Cricetulus , Glicoproteínas/química , Glicoproteínas/genética , Glicoproteínas/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
7.
Opt Express ; 19(14): 12879-84, 2011 Jul 04.
Artículo en Inglés | MEDLINE | ID: mdl-21747439

RESUMEN

We investigate the transmission performance of 224Gbit/s polarization-division-multiplexed 16-state quadrature amplitude modulation (PDM-16QAM) for systems employing standard single mode fiber (SSMF) and erbium doped fiber amplifiers (EDFAs). We consider the effectiveness of return-to-zero (RZ) data pulses with varying duty cycles and digital backpropagation (DBP) in reducing nonlinear distortion in wavelength-division- multiplexed (WDM) links with 3, 5, 7 and 9 channels. Similar improvement in transmission reach of 18-25% was achieved either by pulse-carving at the transmitter or by DBP, yielding maximum transmission distances of up to 1760km for RZ-pulse-shapes and 1280km for NRZ.


Asunto(s)
Amplificadores Electrónicos , Tecnología de Fibra Óptica/instrumentación , Rayos Láser , Procesamiento de Señales Asistido por Computador/instrumentación , Telecomunicaciones/instrumentación , Diseño Asistido por Computadora , Diseño de Equipo , Análisis de Falla de Equipo , Microondas , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
8.
Opt Express ; 19(10): 9296-302, 2011 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-21643184

RESUMEN

We demonstrate, for the first time, the generation and transmission of polarization-switched QPSK (PS-QPSK) signals at 42.9 Gb/s. Long-haul transmission of PS-QPSK is experimentally investigated in a recirculating loop and compared with transmission of dual-polarization QPSK (DP-QPSK) at 42.9 Gb/s per channel. A reduction in the required OSNR of 0.7 dB was found at a BER of 3.8 x 10(-3), resulting in an increase in maximum reach of more than 30% for a WDM system operating on a 50 GHz frequency grid. The maximum reach of 13640 km for WDM PS-QPSK is, to the best of our knowledge, the longest distance reported for 40 Gb/s WDM transmission, over an uncompensated link, with standard fiber and amplification.

9.
J Am Chem Soc ; 133(22): 8436-9, 2011 Jun 08.
Artículo en Inglés | MEDLINE | ID: mdl-21526835

RESUMEN

A directed evolution approach has been used for the generation of variants of galactose oxidase (GOase) that can selectively oxidize glycans on glycoproteins. The aldehyde function introduced on the glycans D-mannose (Man) and D-N-acetyl glucosamine (GlcNAc) by the enzyme variants could then be used to label the glycoproteins and also whole cells that display mannosides on their surface.


Asunto(s)
Compuestos Cromogénicos/química , Evolución Molecular , Galactosa Oxidasa/genética , Glicoproteínas/genética , Galactosa Oxidasa/química , Variación Genética , Glicoproteínas/química , Modelos Moleculares , Estructura Molecular , Ingeniería de Proteínas , Especificidad por Sustrato
10.
Opt Express ; 19(26): B581-6, 2011 Dec 12.
Artículo en Inglés | MEDLINE | ID: mdl-22274074

RESUMEN

We investigated ultra-long-haul transmission of polarization-switched QPSK (PS-QPSK) and polarization-division-multiplexed BPSK (PDM-BPSK) at 42.9 Gbit/s experimentally as well as by means of computer simulations. PDM-BPSK allowed transmission distances in excess of 14,040 km to be achieved, compared to 13,640 km for PS-QPSK. However, PS-QPSK offers a significant reduction in receiver complexity due to the lower symbol-rate.

11.
Opt Express ; 19(26): B836-41, 2011 Dec 12.
Artículo en Inglés | MEDLINE | ID: mdl-22274111

RESUMEN

The sensitivity of the four-dimensional modulation format, polarization-switched quadrature phase shift keying (PS-QPSK), is compared with polarization division multiplexed QPSK (PDM-QPSK), binary phase shift keying (PDM-BPSK) and 8-ary quadrature amplitude modulation (PDM-8QAM) at a constant bitrate (12.5 Gbit/s) using a preamplified signal to improve receiver sensitivity. The sensitivity without preamplification is also obtained. PS-QPSK is found to maintain a sensitivity advantage over the reference formats in line with theory with an absolute sensitivity of -52.7 dBm (4.2 photons/bit), assuming hard decision FEC.

12.
Opt Express ; 18(12): 12939-47, 2010 Jun 07.
Artículo en Inglés | MEDLINE | ID: mdl-20588423

RESUMEN

In this paper long-haul, single channel, polarization multiplexed 16-state quadrature amplitude modulation (PDM-QAM-16) transmission at 112 Gbit/s is investigated. Novel digital signal processing techniques are used to perform carrier phase estimation and symbol estimation, in combination with nonlinear digital backpropagation. The results obtained demonstrate that the use of digital nonlinear backpropagation increases the optimum launch power from -4 dBm to -1 dBm with a consequent increase in maximum reach from 1440 km to 2400 km, which is a record transmission distance for QAM-16 reported to date for an SMF link with EDFAs only. Furthermore, experimental measurements are supported by simulations, based on the link used in the experiment.

13.
Thromb Haemost ; 104(2): 243-51, 2010 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-20508904

RESUMEN

Clearance mechanisms for recombinant activated human FVII (rFVIIa; NovoSeven), a heterogeneously glycosylated protein, have yet to be fully elucidated, but may involve the liver. The effects of the gamma-carboxy glutamic acid (Gla) domain and the sialic acid content of the protein on rFVIIa clearance were investigated following intravenous administration of rFVIIa lacking the Gla domain, des(1-44) rFVIIa and asialo-rFVIIa in pharmacokinetic (PK) studies and perfused rat livers. PK parameters for both rFVIIa and des(1-44) rFVIIa had similar biphasic clearance profiles, as well as half-lives ([t(1/2)]=80 and 88 minutes, respectively), while asialo-rFVIIa was cleared quickly (t(1/2)=21 minutes) with a linear clearance profile. Perfused liver studies with all proteins (10 nM) mirrored the trends in profiles observed in the PK study. rFVIIa and des(1-44) rFVIIa were cleared to a similar extent, 41% and 35%, respectively, after 1 h, whereas plasma-derived FVII from humans (which has a higher sialylation content than rFVIIa) was cleared to a lesser extent (21%). Asialo-rFVIIa, on the other hand, was almost totally cleared and when an excess of asialo-orosomucoid was added to the perfusate, its clearance was significantly reduced (by 34%) and also for rFVIIa, albeit to a lesser extent (by 14%). Together these data suggest that carbohydrate receptor(s) (e.g. the asialoglycoprotein receptor, ASGPR) play a role in asialo-rFVIIa and rFVIIa clearance. In vivo and liver clearance data correlated well showing similar trends and indicated that rFVIIa clearance is not affected by the Gla domain, but rather by a subpopulation of N-glycosylated structures on rFVIIa.


Asunto(s)
Asialoglicoproteínas/farmacocinética , Coagulantes/farmacocinética , Factor VIIa/farmacocinética , Hígado/metabolismo , Fragmentos de Péptidos/farmacocinética , Animales , Receptor de Asialoglicoproteína/metabolismo , Asialoglicoproteínas/administración & dosificación , Asialoglicoproteínas/sangre , Asialoglicoproteínas/farmacología , Coagulantes/administración & dosificación , Coagulantes/sangre , Factor VIIa/administración & dosificación , Glicosilación , Semivida , Humanos , Inyecciones Intravenosas , Hígado/efectos de los fármacos , Masculino , Tasa de Depuración Metabólica , Orosomucoide/análogos & derivados , Orosomucoide/farmacología , Fragmentos de Péptidos/administración & dosificación , Fragmentos de Péptidos/sangre , Perfusión , Ratas , Ratas Sprague-Dawley , Proteínas Recombinantes/administración & dosificación , Proteínas Recombinantes/sangre , Proteínas Recombinantes/farmacocinética
14.
J Med Chem ; 52(9): 2989-3000, 2009 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-19385613

RESUMEN

The aim of the work presented here was to design and synthesize potent human glucagon receptor antagonists with improved pharmacokinetic (PK) properties for development of pharmaceuticals for the treatment of type 2 diabetes. We describe the preparation of compounds with cyclic cores (5-aminothiazoles), their binding affinities for the human glucagon and GIP receptors, as well as affinities for rat, mouse, pig, dog, and monkey glucagon receptors. Generally, the compounds had slightly less glucagon receptor affinity compared to compounds of the previous series, but this was compensated for by much improved PK profiles in both rats and dogs with high oral bioavailabilities and sustained high plasma exposures. The compounds generally showed species selectivity for glucagon receptor binding with poor affinities for the rat, mouse, rabbit, and pig receptors. However, dog and monkey glucagon receptor affinities seem to reflect the human situation. One compound of this series, 18, was tested intravenously in an anesthetized glucagon-challenged monkey model of hyperglucagonaemia and hyperglycaemia and was shown dose-dependently to decrease glycaemia. Further, high plasma exposures and a long plasma half-life (5.2 h) were obtained.


Asunto(s)
Receptores de Glucagón/antagonistas & inhibidores , Tiazoles/farmacología , Tiazoles/farmacocinética , Administración Oral , Animales , Línea Celular , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Diseño de Fármacos , Semivida , Humanos , Receptores de Glucagón/metabolismo , Especificidad de la Especie , Tiazoles/química , Tiazoles/metabolismo
15.
J Med Chem ; 51(17): 5387-96, 2008 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-18707090

RESUMEN

Optimization of a new series of small molecule human glucagon receptor (hGluR) antagonists is described. In the process of optimizing glucagon receptor antagonists, we counter-screened against the closely related human gastric inhibitory polypeptide receptor (hGIPR), and through structure activity analysis, we obtained compounds with low nanomolar affinities toward the hGluR, which were selective against the hGIPR and the human glucagon-like peptide-1 receptor (hGLP-1R). In the best cases, we obtained a >50 fold selectivity for the hGluR over the hGIPR and a >1000 fold selectivity over the hGLP-1R. A potent and selective glucagon receptor antagonist was demonstrated to inhibit glucagon-induced glycogenolysis in primary rat hepatocytes as well as to lower glucagon-induced hyperglycemia in Sprague-Dawley rats. Furthermore, the compound was shown to lower blood glucose in the ob/ob mouse after oral dosing.


Asunto(s)
Hiperglucemia/tratamiento farmacológico , Receptores de la Hormona Gastrointestinal/metabolismo , Receptores de Glucagón/antagonistas & inhibidores , Animales , Glucemia/efectos de los fármacos , Células Cultivadas , Glucogenólisis/efectos de los fármacos , Hepatocitos/metabolismo , Humanos , Ratones , Ratones Obesos , Unión Proteica , Ratas , Ratas Sprague-Dawley , Receptores de la Hormona Gastrointestinal/antagonistas & inhibidores , Relación Estructura-Actividad
16.
Bioorg Med Chem Lett ; 17(19): 5472-8, 2007 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-17827014

RESUMEN

Following our previous publication describing the biological profiles, we herein describe the structure-activity relationships of a core set of quinoxalines as the hGLP-1 receptor agonists. The most potent and efficacious compounds are 6,7-dichloroquinoxalines bearing an alkyl sulfonyl group at the C-2 position and a secondary alkyl amino group at the C-3 position. These findings serve as a valuable starting point for the discovery of more drug-like small molecule agonists for the hGLP-1 receptor.


Asunto(s)
Receptores de Glucagón/agonistas , AMP Cíclico/metabolismo , Inhibidores de la Dipeptidil-Peptidasa IV , Receptor del Péptido 1 Similar al Glucagón , Humanos , Indicadores y Reactivos , Conformación Molecular , Inhibidores de Proteasas/síntesis química , Inhibidores de Proteasas/farmacología , Relación Estructura-Actividad
17.
J Med Chem ; 50(1): 113-28, 2007 Jan 11.
Artículo en Inglés | MEDLINE | ID: mdl-17201415

RESUMEN

A weak human glucagon receptor antagonist with an IC50 of 7 microM was initially found by screening of libraries originally targeted to mimic the binding of the glucagon-like peptide (GLP-1) hormone to its receptor. Optimization of this hit for binding affinity for the glucagon receptor led to ligands with affinity in the nanomolar range. In addition to receptor binding, optimization efforts were made to stabilize the molecules against fast metabolic turnover. A potent antagonist of the human human glucagon receptor was obtained that had 17% oral availability in rats with a plasma half-life of 90 min. The major metabolites of this lead were identified and used to further optimize this series with respect to pharmacokinetic properties. This final optimization led to a potent glucagon antagonist that was orally available in rats and dogs and was efficacious in lowering blood glucose levels in a diabetic animal model.


Asunto(s)
Hipoglucemiantes/síntesis química , Receptores de Glucagón/antagonistas & inhibidores , beta-Alanina/análogos & derivados , beta-Alanina/síntesis química , Administración Oral , Animales , Disponibilidad Biológica , Diabetes Mellitus Experimental/tratamiento farmacológico , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Perros , Humanos , Hipoglucemiantes/farmacología , Ratones , Ratones Obesos , Ratas , Relación Estructura-Actividad , beta-Alanina/farmacología
18.
Proc Natl Acad Sci U S A ; 104(3): 937-42, 2007 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-17213325

RESUMEN

The peptide hormone glucagon-like peptide (GLP)-1 has important actions resulting in glucose lowering along with weight loss in patients with type 2 diabetes. As a peptide hormone, GLP-1 has to be administered by injection. Only a few small-molecule agonists to peptide hormone receptors have been described and none in the B family of the G protein coupled receptors to which the GLP-1 receptor belongs. We have discovered a series of small molecules known as ago-allosteric modulators selective for the human GLP-1 receptor. These compounds act as both allosteric activators of the receptor and independent agonists. Potency of GLP-1 was not changed by the allosteric agonists, but affinity of GLP-1 for the receptor was increased. The most potent compound identified stimulates glucose-dependent insulin release from normal mouse islets but, importantly, not from GLP-1 receptor knockout mice. Also, the compound stimulates insulin release from perfused rat pancreas in a manner additive with GLP-1 itself. These compounds may lead to the identification or design of orally active GLP-1 agonists.


Asunto(s)
Quinoxalinas/farmacología , Receptores de Glucagón/agonistas , Sulfonas/farmacología , Tiadiazoles/farmacología , Animales , Células Cultivadas , Cricetinae , Evaluación Preclínica de Medicamentos , Receptor del Péptido 1 Similar al Glucagón , Péptidos Similares al Glucagón/química , Péptidos Similares al Glucagón/metabolismo , Humanos , Insulina/metabolismo , Secreción de Insulina , Ratones , Ratones Noqueados , Estructura Molecular , Páncreas/efectos de los fármacos , Páncreas/metabolismo , Páncreas/cirugía , Perfusión , Quinoxalinas/química , Receptores de Glucagón/genética , Receptores de Glucagón/metabolismo , Sulfonas/química , Tiadiazoles/química
20.
Bioconjug Chem ; 13(5): 927-36, 2002.
Artículo en Inglés | MEDLINE | ID: mdl-12236773

RESUMEN

A novel aryl-bis-benzimidazole amino acid analogue of the DNA-binding compound Hoechst 33258 has recently been designed for incorporation in peptide combinatorial libraries by replacing the N-methylpiperazine group with a carboxyl group and the hydroxy group with an amino-methyl group. The DNA-binding properties of the aryl-bis-benzimidazole monomer with the C-terminus derivatized with 3-(dimethylamino)-propylamine has been investigated in this paper by (1)H NMR studies of two different complexes with two different DNA sequences: A(5) d(5'-GCCA(5)CG-3'):d(5'-CGT(5)GGC-3') and A(3)T(3) d(5'-CGA(3)T(3)CG-3')(2). Chemical shift footprinting shows that the ligand binds at the center of the A(3)T(3) sequence but at the 3'-end of A(5). A large number of NOEs show a well-defined complex with the ligand situated at the center of the palindromic A(3)T(3) but with the asymmetric A(5) the ligand binds with an orientational preference with the bis-benzimidazole moiety displaced toward the 3'-end from the center of the duplex. Two families of models of the complexes with A(5) and A(3)T(3) were derived with restrained molecular dynamics based on a large set of 70 and 61, respectively, intermolecular ligand NOEs. Both models give a picture of a tightly fitting ligand with close van der Waals contacts with the walls of the minor groove and with the two benzimidazole and the amide hydrogens involved in bifurcated cross-strand hydrogen bonds to adenine N3 and thymine O2. The minor groove width of the models correlate well with the binding site of the ligand, and the orientational preference is argued to be a consequence of the minor groove width and hydrogen bonding.


Asunto(s)
Bisbenzimidazol/análogos & derivados , ADN/metabolismo , Resonancia Magnética Nuclear Biomolecular , Oligopéptidos/farmacocinética , Sitios de Unión , Enlace de Hidrógeno , Ligandos , Modelos Moleculares , Oligonucleótidos/metabolismo , Oligopéptidos/síntesis química , Relación Estructura-Actividad
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