RESUMEN
Rice (Oryza sativa L.) cultivars show impairment of growth in response to environmental stresses such as cold at the early seedling stage. Locally adapted weedy rice is able to survive under adverse environmental conditions, and can emerge in fields from greater soil depth. Cold-tolerant weedy rice can be a good genetic source for developing cold-tolerant, weed-competitive rice cultivars. An in-depth analysis is presented here of diverse indica and japonica rice genotypes, mostly weedy rice, for cold stress response to provide an understanding of different stress adaptive mechanisms towards improvement of the rice crop performance in the field. We have tested a collection of weedy rice genotypes to: 1) classify the subspecies (ssp.) grouping (japonica or indica) of 21 accessions; 2) evaluate their sensitivity to cold stress; and 3) analyze the expression of stress-responsive genes under cold stress and a combination of cold and depth stress. Seeds were germinated at 25°C at 1.5- and 10-cm sowing depth for 10d. Seedlings were then exposed to cold stress at 10°C for 6, 24 and 96h, and the expression of cold-, anoxia-, and submergence-inducible genes was analyzed. Control plants were seeded at 1.5cm depth and kept at 25°C. The analysis revealed that cold stress signaling in indica genotypes is more complex than that of japonica as it operates via both the CBF-dependent and CBF-independent pathways, implicated through induction of transcription factors including OsNAC2, OsMYB46 and OsF-BOX28. When plants were exposed to cold + sowing depth stress, a complex signaling network was induced that involved cross talk between stresses mediated by CBF-dependent and CBF-independent pathways to circumvent the detrimental effects of stresses. The experiments revealed the importance of the CBF regulon for tolerance to both stresses in japonica and indica ssp. The mechanisms for cold tolerance differed among weedy indica genotypes and also between weedy indica and cultivated japonica ssp. as indicated by the up/downregulation of various stress-responsive pathways identified from gene expression analysis. The cold-stress response is described in relation to the stress signaling pathways, showing complex adaptive mechanisms in different genotypes.
Asunto(s)
Respuesta al Choque por Frío/genética , Regulación de la Expresión Génica de las Plantas , Genes de Plantas/genética , Oryza/crecimiento & desarrollo , Alcohol Deshidrogenasa/metabolismo , Frío , Proteínas F-Box/genética , Proteínas F-Box/metabolismo , Perfilación de la Expresión Génica , Germinación/genética , Glutamato Deshidrogenasa/biosíntesis , Glutamato Deshidrogenasa/metabolismo , Oryza/clasificación , Oryza/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , alfa-Amilasas/metabolismoRESUMEN
The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management.
Asunto(s)
Variación Genética , Resistencia a los Herbicidas , Herbicidas/farmacología , Oryza/fisiología , Productos Agrícolas , Demografía , Evolución Molecular , Genotipo , Haplotipos , Oryza/genética , Fenotipo , Análisis de Secuencia de ADN , Estados UnidosRESUMEN
Strategies to prevent herbicide weed resistance are rarely practiced by farmers. As a consequence, herbicide resistant weed biotypes (HRWB) have been increasing worldwide in the past decades. This paper aims to analyze the weed population growth curve and to propose a strategic plan for prevention and management of HRWB. The existing weed control methods are organized considering the sensitivity analysis of the population growth at each phase of the logistic growth curve. This analysis indicates that tactics directed to reduce the population growth rate are most appropriate for HRWB management,mainly at the initial phase of the resistant weed population growth. This epidemiological approach provides evidence to the importance of early detection and management of HRWB.
