Surface-Constrained Metropolis Monte Carlo: Simulation of Reactions on Triply Periodic Minimal Surfaces.

Triply periodic minimal surfaces (TPMS) inspired by nature serve as a foundation for developing novel nanomaterials, such as templated silicas, graphene sponges, and schwarzites, with customizable optical, poroelastic, adsorptive, catalytic, and other properties. Computer simulations of reactions on TPMS using reactive intermolecular potentials hold great promise for constructing and screening potential TPMS with the desired properties. Here, we developed an off-lattice, surface-constrained Metropolis Monte Carlo (SC-MMC) algorithm that utilized a temperature quench process. The presented SC-MMC algorithm was used to investigate the process of graphitization reactions on the Schwarz primitive, Schwarz diamond, and Schoen gyroid TPMS, all with a cubic lattice parameter of 8 nm. We show that the optimized carbon TPMS exhibits a low energy, approximately -7.1 eV/atom, comparable to that of graphite and diamond crystals, along with a variety of topological defects. Furthermore, these structures showcase extensive and smooth surfaces characterized by a negative discrete Gaussian curvature, a distinctive feature indicative of an interconnected morphology. They possess specific surface areas of ∼2700 m2/g, comparable to graphene, and exhibit a significant porosity of around 90%. The theoretical X-ray correlation functions and nitrogen adsorption isotherms confirm that the constructed TPMS exhibit remarkably similar surface properties, although the pore space topology varies significantly.

Atomistic origin of nano-silver paracrystalline structure: molecular dynamics and x-ray diffraction studies.

Classical molecular dynamics (MD) and x-ray diffraction (XRD) have been used to establish the origin of the paracrystalline structure of silver nanoparticles at the atomic scale. Models based on the face-centred cubic structure have been computer generated and their atomic arrangements have been optimized by the MD with the embedded-atom model (EAM) potential and its modified version (MEAM). The simulation results are compared with the experimental XRD data in reciprocal and real spaces, i.e. the structure factor and the pair distribution function. The applied approach returns the structural models, defined by the Cartesian coordinates of the constituent atoms. It has been found that most of the structural features of Ag nanoparticles are better reproduced by the MEAM. The presence of vacancy defects in the structure of the Ag nanoparticles has been considered and the average concentration of vacancies is estimated to be 3 at.%. The average nearest-neighbour Ag-Ag distances and the coordination numbers are determined and compared with the values predicted for the bulk Ag, demonstrating a different degree of structural disorder on the surface and in the core, compared to the bulk crystalline counterpart. It has been shown that the paracrystalline structure of the Ag nanoparticles has origin in the surface disorder and the disorder generated by the presence of the vacancy defects. Both sources lead to network distortion that propagates proportionally to the square root of the interatomic distances.

Supramolecular Structure of Phenyl Derivatives of Butanol Isomers.

Wide-angle X-ray scattering patterns were recorded for a series of aliphatic butanol isomers (n-, iso-, sec-, tert-butanol) and their phenyl derivatives (4-phenyl-1-butanol, 2-methyl-3-phenyl-1-propanol, 4-phenyl-2-butanol, and 2-methyl-1-phenyl-2-propanol, respectively) to determine their atomic-scale structure with particular emphasis on the formation of supramolecular clusters. In addition, molecular dynamics simulations were carried out and yielded good agreement with experimental data. The combination of experimental and theoretical results allowed clarification of the origin of the pre-peak appearing at low scattering angles for the aliphatic butanols and its absence for their phenyl counterparts. It was demonstrated that the location of the hydroxyl group in the molecule of alkyl butanol, its geometry, and rigidity determine the morphology of the supramolecular clusters, while the addition of the aromatic moiety causes more disordered organization of molecules. The phenyl group significantly decreases the number of hydrogen bonds and size of the supramolecular clusters formed via the O-H···O scheme. The lower association ability of phenyl alcohols via H-bonds is additionally attenuated by the appearance of competing π-π configurations evidenced by the structural models.

The glass-like structure of iron-nickel nanochains produced by the magnetic-field-induced reduction reaction with sodium borohydride.

Preparation and detailed structural characterization of iron-nickel wire-like nanochains with Fe0.75Ni0.25, Fe0.50Ni0.50, and Fe0.25Ni0.75 compositions are reported. The investigated nanomaterials were produced by the novel template-free magnetic-field-induced reduction reaction with NaBH4 as the reducing agent. It is demonstrated that this method leads to the formation of Fe-Ni nanochains composed of spherical nanoparticles with an average diameter of 50-70 nm and with a very high degree of atomic disorder manifested as the lack of clearly developed bcc and fcc phases, which are usually observed for nano- and polycrystalline Fe-Ni species. The recorded wide-angle X-ray scattering data for the obtained Fe-Ni nanochains exhibit a strong resemblance to those obtained for bulk metallic glasses. The atomic scale structure of the investigated nanochains has been studied using pair distribution function analysis of the recorded total scattering data. The best fits to the experimental pair distribution functions have been achieved assuming two-phase models of hcp and bcc networks with the size of coherently scattering regions of about 2.5 nm in diameter, for each Fe-Ni composition. The transmission electron microscopy images indicate that the glass-like bimetallic alloy cores are covered by amorphous oxide/hydroxide shells with their thickness ranging from 2 to 5 nm. Moreover, electron energy loss spectroscopy, X-ray photoelectron spectroscopy, and Mössbauer spectroscopy results confirm the core-shell structure of the Fe-Ni nanochains and the complex character of the shell layer which consists of several iron- and nickel-containing phases.

Structural studies of carbons by neutron and x-ray scattering.

Carbon can have many different forms and the characterisation of structural features on a length scale of 1 Å to 10 µm is important in defining its physical and chemical properties for the various forms. The use of either electro-magnetic (x-ray) or particle (neutron) beams plays an important role in determining these characteristics. In this paper, we review the various techniques that are used to determine the structural features by experimental means and how the data are processed to give the required information in a suitable form for detailed analysis by computer simulation. Diffraction methods are used for studies of the atomic arrangement and small-angle scattering techniques are used for studies of microporosity in the sample materials. The experimental data obtained from a wide range of different carbon materials are considered and how these results can be used as a basis for modelling the structures in a quantitative manner is also considered. This information underpins their use as active components in a wide range of functional materials.

Conversion of Natural Tannin to Hydrothermal and Graphene-Like Carbons Studied by Wide-Angle X-ray Scattering.

The atomic structure of carbon materials prepared from natural tannin by two different techniques, high-temperature pyrolysis and low-temperature hydrothermal carbonization, was studied by wide-angle X-ray scattering. The obtained diffraction data were converted to the real space representation in the form of pair distribution functions. The X-ray photoelectron spectroscopy measurements provided information about the chemical state of carbon in tannin-based materials that was used to construct final structural models of the investigated samples. The results of the experimental data in both reciprocal and real spaces were compared with computer simulations based on the PM7 semiempirical quantum chemical method. Using the collected detailed information, structural models of the tannin-based carbons were proposed. The characteristics of the investigated materials at the atomic level were discussed in relation to their preparation method. The rearrangement of the tannin molecular structure and its transformation to graphene-like structure was described. The structure of tannin-based carbons pyrolyzed at 900 °C exhibited coherently scattering domains about 20 Å in size, consisting of two defected atomic layers and resembling a graphene-like arrangement.

AsCl(3): from the crystalline to the liquid state. XRD (176 < T (K) < 250) and WAXS (295 K) studies.

This paper presents structural studies on crystalline and liquid AsCl(3), performed using X-ray diffraction (XRD) and wide-angle X-ray scattering (WAXS) in the 176-250 K temperature range and at 295 K for the crystalline and liquid samples, respectively. The XRD results, collected using a single-crystal diffractometer, show that AsCl(3) crystallizes in the orthorhombic system with P2(1)2(1)2(1) space group and the unit cell parameters a = 9.475(3) A, b = 11.331(2) A, and c = 4.2964(8) A at 221 K. This structure is stable in the temperature range 176-243 K. Above the melting point, at 257 K, transition to the liquid state is observed. The WAXS data were recorded up to a maximum scattering vector K(max) = 16 A(-1) and then converted to real space by the sine Fourier transform, yielding to the reduced radial distribution function (RRDF). For a series of models, based on the crystalline AsCl(3) structure, the intensity and RRDF functions have been computed and compared with the experimental data. These simulations indicate that the model consisting of six AsCl(3) molecules, arranged along the y axis, accounts satisfactorily for the experimental observation. The results of the structure analysis in both crystalline and liquid states are discussed in relation to the influence of the As lone electron pair.