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Background: Liver cirrhosis, as the terminal phase of chronic liver disease fibrosis, is associated with high morbidity and mortality. Traditional methods for assessing liver function, such as clinical scoring systems, offer only a global evaluation and may not accurately reflect regional liver function variations. This study aimed at evaluating the diagnostic potential of whole-liver histogram analysis of gadobenate dimeglumine (Gd-BOPTA)-enhanced magnetic resonance imaging (MRI) for predicting the progression of cirrhosis. Methods: In this retrospective study, 265 consecutive patients with cirrhosis admitted to the Department of Radiology, Shandong Provincial Hospital Affiliated to Shandong First Medical University from August 2012 to September 2019 were enrolled. After the exclusion criteria were applied, 117 patients (84 males and 33 females) were divided into Child-Pugh A cirrhosis (n=43), Child-Pugh B cirrhosis (n=49), and Child-Pugh C cirrhosis (n=25). After correction for liver signal intensity with the spleen was completed, 19 histogram features of the whole liver were extracted and modeled to evaluate liver function, with the Child-Pugh class being incorporated as a clinical parameter. Receiver operating characteristic (ROC) curves were used to assess the diagnosis capability and determine the optimal cutoffs after a mean follow-up of 42.3±19.1 (range, 8-93) months. The association between significant histogram features and the cumulative incidence of hepatic insufficiency was analyzed with the adjusted Kaplan-Meier curve model. Results: Among 117 patients (12%), 14 developed hepatic insufficiency through a period of follow-up. Five features, including the median (P<0.01), 90th percentile (P<0.01), root mean squared (P<0.01), mean (P<0.01), and 10th percentile (P<0.05), were significantly different between the groups with and without hepatic insufficiency according to the Kruskal-Wallis test; in the ROC curve analysis, the area under the curve (AUC) of these features was 0.723 [95% confidence interval (CI): 0.653-0.793], 0.722 (95% CI: 0.652-0.792), 0.722 (95% CI: 0.652-0.792), 0.721 (95% CI: 0.651-0.791), and 0.674 (95% CI: 0.600-0.748) after correction, respectively (all P values <0.05). Median, 90th percentile, root mean squared, and mean were found to be significant factors in predicting liver insufficiency. The adjusted Kaplan-Meier curves revealed that patients with a feature level less than the cutoff, as compared to those with a level above the cutoff, showed a statistically shorter progression-free survival and higher incidences of hepatic insufficiency for significant features of median (cutoff =26.001; 21.28% versus 5.71%; P=0.02), 90th percentile (cutoff =86.263; 20.41% versus 5.88%; P<0.01), root mean squared (cutoff =1,028.477; 19.15% versus 7.14%; P=0.049), and mean (cutoff =27.484; 19.15% versus 7.14%; P=0.049). Patients with a 10th percentile less than -39.811 also showed a higher cumulative incidence of hepatic insufficiency than did those with a value higher than the cutoff (0.18% versus 7.46%; P=0.22). Conclusions: Whole-liver histogram analysis of Gd-BOPTA-enhanced MRI may serve as a noninvasive analytical method to predict hepatic insufficiency in patients with cirrhosis.
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Although contrast-enhanced computed tomography (CE-CT) images significantly improve the accuracy of diagnosing focal liver lesions (FLLs), the administration of contrast agents imposes a considerable physical burden on patients. The utilization of generative models to synthesize CE-CT images from non-contrasted CT images offers a promising solution. However, existing image synthesis models tend to overlook the importance of critical regions, inevitably reducing their effectiveness in downstream tasks. To overcome this challenge, we propose an innovative CE-CT image synthesis model called Segmentation Guided Crossing Dual Decoding Generative Adversarial Network (SGCDD-GAN). Specifically, the SGCDD-GAN involves a crossing dual decoding generator including an attention decoder and an improved transformation decoder. The attention decoder is designed to highlight some critical regions within the abdominal cavity, while the improved transformation decoder is responsible for synthesizing CE-CT images. These two decoders are interconnected using a crossing technique to enhance each other's capabilities. Furthermore, we employ a multi-task learning strategy to guide the generator to focus more on the lesion area. To evaluate the performance of proposed SGCDD-GAN, we test it on an in-house CE-CT dataset. In both CE-CT image synthesis tasks-namely, synthesizing ART images and synthesizing PV images-the proposed SGCDD-GAN demonstrates superior performance metrics across the entire image and liver region, including SSIM, PSNR, MSE, and PCC scores. Furthermore, CE-CT images synthetized from our SGCDD-GAN achieve remarkable accuracy rates of 82.68%, 94.11%, and 94.11% in a deep learning-based FLLs classification task, along with a pilot assessment conducted by two radiologists.
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Medios de Contraste , Hígado , Tomografía Computarizada por Rayos X , Humanos , Tomografía Computarizada por Rayos X/métodos , Hígado/diagnóstico por imagen , Redes Neurales de la Computación , Algoritmos , Neoplasias Hepáticas/diagnóstico por imagen , Aprendizaje Profundo , Procesamiento de Imagen Asistido por Computador/métodosRESUMEN
Multiple Instance Learning (MIL) has demonstrated promise in Whole Slide Image (WSI) classification. However, a major challenge persists due to the high computational cost associated with processing these gigapixel images. Existing methods generally adopt a two-stage approach, comprising a non-learnable feature embedding stage and a classifier training stage. Though it can greatly reduce memory consumption by using a fixed feature embedder pre-trained on other domains, such a scheme also results in a disparity between the two stages, leading to suboptimal classification accuracy. To address this issue, we propose that a bag-level classifier can be a good instance-level teacher. Based on this idea, we design Iteratively Coupled Multiple Instance Learning (ICMIL) to couple the embedder and the bag classifier at a low cost. ICMIL initially fixes the patch embedder to train the bag classifier, followed by fixing the bag classifier to fine-tune the patch embedder. The refined embedder can then generate better representations in return, leading to a more accurate classifier for the next iteration. To realize more flexible and more effective embedder fine-tuning, we also introduce a teacher-student framework to efficiently distill the category knowledge in the bag classifier to help the instance-level embedder fine-tuning. Intensive experiments were conducted on four distinct datasets to validate the effectiveness of ICMIL. The experimental results consistently demonstrated that our method significantly improves the performance of existing MIL backbones, achieving state-of-the-art results. The code and the organized datasets can be accessed by: https://github.com/Dootmaan/ICMIL/tree/confidence-based.
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PURPOSE: To investigate how well an implant stability quotient (ISQ) represents resonance frequency. MATERIALS AND METHODS: Benchtop experiments on standardized samples that replicated a mandibular premolar site were conducted to correlate an ISQ value and a resonance frequency to synthetic bone density and an incremental insertion torque; then, a frequency spectrum analysis was performed to check the validity of the resonance frequency analysis (RFA). Brånemark Mk III implants (4 × 11.5 mm; Nobel Biocare) were placed in Sawbones test models of five different densities (40, 30, 40/20, 20, and 15 PCF). An incremental insertion torque was recorded during implant placement. To perform stability measurements, the test models were partially clamped in a vise (unclamped volume: 10 × 20 × 34 mm). A MulTipeg (Integration Diagnostics) was attached to the implants, and a Penguin (Integration Diagnostics) RFA measured ISQ. Simultaneously, the MulTipeg motion was monitored via a laser Doppler vibrometer and processed by a spectrum analyzer to obtain the resonance frequency. Tightness of the clamp was adjusted to vary the resonance frequency. A statistical analysis produced a linear correlation coefficient (R) among the measured ISQ, resonance frequency, and incremental insertion torque. RESULTS: The resonance frequency had high correlation to the incremental insertion torque (R = 0.978), confirming the validity of using RFA for this study. Measured ISQ data were scattered and had low correlation to the resonance frequency (R = 0.214) and the incremental insertion torque (R = 0.386). The spectrum analysis revealed the simultaneous presence of multiple resonance frequencies. CONCLUSIONS: For the designed benchtop tests, resonance frequency does indicate implant stability in view of Sawbones density and incremental insertion torque. However, ISQ measurements do not correlate to the resonance frequency and may not reflect the stability when multiple resonance frequencies are present simultaneously.
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Implantación Dental Endoósea , Implantes Dentales , Retención de Prótesis Dentales , Análisis de Frecuencia de Resonancia , Torque , Implantación Dental Endoósea/métodos , Humanos , Análisis Espectral/métodos , Mandíbula/cirugía , Densidad Ósea/fisiología , Análisis del Estrés Dental , VibraciónRESUMEN
BACKGROUND AND AIMS: Accurate preoperative prediction of microvascular invasion (MVI) and recurrence-free survival (RFS) is vital for personalised hepatocellular carcinoma (HCC) management. We developed a multitask deep learning model to predict MVI and RFS using preoperative MRI scans. METHODS: Utilising a retrospective dataset of 725 HCC patients from seven institutions, we developed and validated a multitask deep learning model focused on predicting MVI and RFS. The model employs a transformer architecture to extract critical features from preoperative MRI scans. It was trained on a set of 234 patients and internally validated on a set of 58 patients. External validation was performed using three independent sets (n = 212, 111, 110). RESULTS: The multitask deep learning model yielded high MVI prediction accuracy, with AUC values of 0.918 for the training set and 0.800 for the internal test set. In external test sets, AUC values were 0.837, 0.815 and 0.800. Radiologists' sensitivity and inter-rater agreement for MVI prediction improved significantly when integrated with the model. For RFS, the model achieved C-index values of 0.763 in the training set and ranged between 0.628 and 0.728 in external test sets. Notably, PA-TACE improved RFS only in patients predicted to have high MVI risk and low survival scores (p < .001). CONCLUSIONS: Our deep learning model allows accurate MVI and survival prediction in HCC patients. Prospective studies are warranted to assess the clinical utility of this model in guiding personalised treatment in conjunction with clinical criteria.
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Carcinoma Hepatocelular , Aprendizaje Profundo , Neoplasias Hepáticas , Imagen por Resonancia Magnética , Invasividad Neoplásica , Humanos , Carcinoma Hepatocelular/diagnóstico por imagen , Carcinoma Hepatocelular/patología , Carcinoma Hepatocelular/mortalidad , Neoplasias Hepáticas/diagnóstico por imagen , Neoplasias Hepáticas/patología , Neoplasias Hepáticas/mortalidad , Imagen por Resonancia Magnética/métodos , Estudios Retrospectivos , Femenino , Masculino , Persona de Mediana Edad , Anciano , Microvasos/diagnóstico por imagen , Microvasos/patología , Supervivencia sin Enfermedad , Recurrencia Local de NeoplasiaRESUMEN
Contrast-enhanced computed tomography (CE-CT) images are vital for clinical diagnosis of focal liver lesions (FLLs). However, the use of CE-CT images imposes a significant burden on patients due to the injection of contrast agents and extended shooting. Deep learning-based image synthesis models offer a promising solution that synthesizes CE-CT images from non-contrasted CT (NC-CT) images. Unlike natural images, medical image synthesis requires a specific focus on certain organs or localized regions to ensure accurate diagnosis. Determining how to effectively emphasize target organs poses a challenging issue in medical image synthesis. To solve this challenge, we present a novel CE-CT image synthesis model called, Organ-Aware Generative Adversarial Network (OA-GAN). The OA-GAN comprises an organ-aware (OA) network and a dual decoder-based generator. First, the OA network learns the most discriminative spatial features about the target organ (i.e. liver) by utilizing the ground truth organ mask as localization cues. Subsequently, NC-CT image and captured feature are fed into the dual decoder-based generator, which employs a local and global decoder network to simultaneously synthesize the organ and entire CECT image. Moreover, the semantic information extracted from the local decoder is transferred to the global decoder to facilitate better reconstruction of the organ in entire CE-CT image. The qualitative and quantitative evaluation on a CE-CT dataset demonstrates that the OA-GAN outperforms state-of-the-art approaches for synthesizing two types of CE-CT images such as arterial phase and portal venous phase. Additionally, subjective evaluations by expert radiologists and a deep learning-based FLLs classification also affirm that CE-CT images synthesized from the OA-GAN exhibit a remarkable resemblance to real CE-CT images.
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Arterias , Hígado , Humanos , Hígado/diagnóstico por imagen , Semántica , Tomografía Computarizada por Rayos XRESUMEN
Medicalimaging-based report writing for effective diagnosis in radiology is time-consuming and can be error-prone by inexperienced radiologists. Automatic reporting helps radiologists avoid missed diagnoses and saves valuable time. Recently, transformer-based medical report generation has become prominent in capturing long-term dependencies of sequential data with its attention mechanism. Nevertheless, input features obtained from traditional visual extractor of conventional transformers do not capture spatial and semantic information of an image. So, the transformer is unable to capture fine-grained details and may not produce detailed descriptive reports of radiology images. Therefore, we propose a spatio-semantic visual extractor (SSVE) to capture multi-scale spatial and semantic information from radiology images. Here, we incorporate two types of networks in ResNet 101 backbone architecture, i.e. (i) deformable network at the intermediate layer of ResNet 101 that utilizes deformable convolutions in order to obtain spatially invariant features, and (ii) semantic network at the final layer of backbone architecture which uses dilated convolutions to extract rich multi-scale semantic information. Further, these network representations are fused to encode fine-grained details of radiology images. The performance of our proposed model outperforms existing works on two radiology report datasets, i.e., IU X-ray and MIMIC-CXR.
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Semántica , Humanos , Sistemas de Información Radiológica , Redes Neurales de la Computación , AlgoritmosRESUMEN
Object detection using convolutional neural networks (CNNs) has achieved high performance and achieved state-of-the-art results with natural images. Compared to natural images, medical images present several challenges for lesion detection. First, the sizes of lesions vary tremendously, from several millimeters to several centimeters. Scale variations significantly affect lesion detection accuracy, especially for the detection of small lesions. Moreover, the effective extraction of temporal and spatial features from multi-phase CT images is also an important issue. In this paper, we propose a group-based deep layer aggregation method with multiphase attention for liver lesion detection in multi-phase CT images. The method, which is called MSPA-DLA++, is a backbone feature extraction network for anchor-free liver lesion detection in multi-phase CT images that addresses scale variations and extracts hidden features from such images. The effectiveness of the proposed method is demonstrated on public datasets (LiTS2017) and our private multiphase dataset. The results of the experiments show that MSPA-DLA++ can improve upon the performance of state-of-the-art networks by approximately 3.7%.
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Neoplasias Hepáticas , Redes Neurales de la Computación , Humanos , Tomografía Computarizada por Rayos XRESUMEN
Microvascular invasion of HCC is an important factor affecting postoperative recurrence and prognosis of patients. Preoperative diagnosis of MVI is greatly significant to improve the prognosis of HCC. Currently, the diagnosis of MVI is mainly based on the histopathological examination after surgery, which is difficult to meet the requirement of preoperative diagnosis. Also, the sensitivity, specificity and accuracy of MVI diagnosis based on a single imaging feature are low. In this paper, a robust, high-precision cross-modality unified framework for clinical diagnosis is proposed for the prediction of microvascular invasion of hepatocellular carcinoma. It can effectively extract, fuse and locate multi-phase MR Images and clinical data, enrich the semantic context, and comprehensively improve the prediction indicators in different hospitals. The state-of-the-art performance of the approach was validated on a dataset of HCC patients with confirmed pathological types. Moreover, CMIR provides a possible solution for related multimodality tasks in the medical field.
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Carcinoma Hepatocelular , Neoplasias Hepáticas , Humanos , Carcinoma Hepatocelular/diagnóstico por imagen , Carcinoma Hepatocelular/cirugía , Neoplasias Hepáticas/diagnóstico por imagen , Neoplasias Hepáticas/cirugía , Hospitales , Periodo Posoperatorio , SemánticaRESUMEN
Alzheimer's disease (AD) is a progressive neurodegenerative disease. Early detection and intervention are crucial in preventing the progression of AD. To achieve efficient and scalable AD auto-detection based on structural Magnetic Resonance Imaging (sMRI), a lightweight neural network using multi-slice sMRI is proposed in this paper. The backbone for feature extraction is based on ShuffleNet V1 architecture, which is effective for overcoming the limitations posed by limited sMRI data and resource-restricted devices. In addition, we incorporate Efficient Channel Attention (ECA) to capture cross-channel interaction information, enabling us to effectively enhance features of disease associated brain regions. To optimize the model, we employ both cross entropy loss and triplet loss functions to constrain the predicted probabilities to the ground-truth labels, and to ensure appropriate representation of distances between different classes in the learned features. Experimental results show that the classification accuracies of our method for AD vs. CN, AD vs. MCI, and MCI vs. CN classification tasks are 95.00%, 87.50%, and 85.62% respectively. Our method utilizes only 3.42 M parameters and 6.08G FLOPs, while maintaining a comparable level of performance compared to the other 5 latest lightweight methods. This model design is computationally efficient, allowing it to process large amounts of data quickly and accurately in a timely manner. Additionally, it has the potential to advance the intelligent detection of Alzheimer's disease on devices with limited computing capabilities.
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Enfermedad de Alzheimer , Disfunción Cognitiva , Enfermedades Neurodegenerativas , Humanos , Enfermedad de Alzheimer/diagnóstico por imagen , Enfermedad de Alzheimer/patología , Imagen por Resonancia Magnética/métodos , Redes Neurales de la ComputaciónRESUMEN
Cardiometabolic disorders (CMD) are a growing public health problem across the world. Among the known cardiometabolic risk factors are compounds that induce endocrine and metabolic dysfunctions, such as endocrine disrupting chemicals (EDCs). To date, how EDCs influence molecular programs and cardiometabolic risks has yet to be fully elucidated, especially considering the complexity contributed by species-, chemical-, and dose-specific effects. Moreover, different experimental and analytical methodologies employed by different studies pose challenges when comparing findings across studies. To explore the molecular mechanisms of EDCs in a systematic manner, we established a data-driven computational approach to meta-analyze 30 human, mouse, and rat liver transcriptomic datasets for 4 EDCs, namely bisphenol A (BPA), bis(2-ethylhexyl) phthalate (DEHP), tributyltin (TBT), and perfluorooctanoic acid (PFOA). Our computational pipeline uniformly re-analyzed pre-processed quality-controlled microarray data and raw RNAseq data, derived differentially expressed genes (DEGs) and biological pathways, modeled gene regulatory networks and regulators, and determined CMD associations based on gene overlap analysis. Our approach revealed that DEHP and PFOA shared stable transcriptomic signatures that are enriched for genes associated with CMDs, suggesting similar mechanisms of action such as perturbations of peroxisome proliferator-activated receptor gamma (PPARγ) signaling and liver gene network regulators VNN1 and ACOT2. In contrast, TBT exhibited highly divergent gene signatures, pathways, network regulators, and disease associations from the other EDCs. In addition, we found that the rat, mouse, and human BPA studies showed highly variable transcriptomic patterns, providing molecular support for the variability in BPA responses. Our work offers insights into the commonality and differences in the molecular mechanisms of various EDCs and establishes a streamlined data-driven workflow to compare molecular mechanisms of environmental substances to elucidate the underlying connections between chemical exposure and disease risks.
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Enfermedades Cardiovasculares , Dietilhexil Ftalato , Disruptores Endocrinos , Fenoles , Humanos , Ratones , Ratas , Animales , Transcriptoma , Redes Reguladoras de Genes , Disruptores Endocrinos/metabolismo , Perfilación de la Expresión Génica , Hígado/metabolismo , Compuestos de BencidriloRESUMEN
Reprocessing of gastrointestinal (GI) endoscopes and accessories is an essential part of patient safety and quality control in GI endoscopy centers. However, current endoscopic reprocessing guidelines or procedures are not adequate to ensure patient-safe endoscopy. Approximately 5.4 % of the clinically used duodenoscopes remain contaminated with high-concern microorganisms. Thus, the Digestive Endoscopy Society of Taiwan (DEST) sets standards for the reprocessing of GI endoscopes and accessories in endoscopy centers. DEST organized a task force working group using the guideline-revision process. These guidelines contain principles and instructions of step-by-step for endoscope reprocessing. The updated guidelines were established after a thorough review of the existing global and local guidelines, systematic reviews, and health technology assessments of clinical effectiveness. This guideline aims to provide detailed recommendations for endoscope reprocessing to ensure adequate quality control in endoscopy centers.
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Desinfección , Contaminación de Equipos , Humanos , Desinfección/métodos , Taiwán , Endoscopios , Endoscopios GastrointestinalesRESUMEN
Caenorhabditis elegans is a valuable model to study organ, tissue, and cell-type responses to external cues. However, the nematode comprises multiple syncytial tissues with spatial coordinates corresponding to distinct nuclear transcriptomes. Here, we present a single-nucleus RNA sequencing (snRNA-seq) protocol that aims to overcome difficulties encountered with single-cell RNA sequencing in C. elegans. We describe steps for isolating C. elegans nuclei for downstream applications including snRNA-seq applied to the context of alcohol exposure. For complete details on the use and execution of this protocol, please refer to Truong et al. (2023).1.
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Caenorhabditis elegans , Núcleo Celular , Animales , Caenorhabditis elegans/genética , Análisis de Secuencia de ARN , Secuencia de Bases , Núcleo Celular/genética , ARN Nuclear PequeñoRESUMEN
MRI is crucial for the diagnosis of HCC patients, especially when combined with CT images for MVI prediction, richer complementary information can be learned. Many studies have shown that whether hepatocellular carcinoma is accompanied by vascular invasion can be evidenced by imaging examinations such as CT or MR, so they can be used as a multimodal joint prediction to improve the prediction accuracy of MVI. However, it is high-risk, time-consuming and expensive in current clinical diagnosis due to the use of gadolinium-based contrast agent (CA) injection. If MRI could be synthesized without CA injection, there is no doubt that it would greatly optimize the diagnosis. Based on this, this paper proposes a high-quality image synthesis network, MVI-Wise GAN, that can be used to improve the prediction of microvascular invasion in HCC. It starts from the underlying imaging perspective, introduces K-space and feature-level constraints, and combines three related networks (an attention-aware generator, a convolutional neural network-based discriminator and a region-based convolutional neural network detector) Together, precise tumor region detection by synthetic tumor-specific MRI. Accurate MRI synthesis is achieved through backpropagation, the feature representation and context learning of HCC MVI are enhanced, and the performance of loss convergence is improved through residual learning. The model was tested on a dataset of 256 subjects from Run Run Shaw Hospital of Zhejiang University. Experimental results and quantitative evaluation show that MVI-Wise GAN achieves high-quality MRI synthesis with a tumor detection accuracy of 92.3%, which is helpful for the clinical diagnosis of liver tumor MVI.
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Carcinoma Hepatocelular , Neoplasias Hepáticas , Humanos , Carcinoma Hepatocelular/diagnóstico por imagen , Neoplasias Hepáticas/diagnóstico por imagen , Invasividad Neoplásica , Imagen por Resonancia Magnética/métodos , Medios de Contraste/farmacología , RadiofármacosRESUMEN
Computer-aided diagnostic methods, such as automatic and precise liver tumor detection, have a significant impact on healthcare. In recent years, deep learning-based liver tumor detection methods in multi-phase computed tomography (CT) images have achieved noticeable performance. Deep learning frameworks require a substantial amount of annotated training data but obtaining enough training data with high quality annotations is a major issue in medical imaging. Additionally, deep learning frameworks experience domain shift problems when they are trained using one dataset (source domain) and applied to new test data (target domain). To address the lack of training data and domain shift issues in multiphase CT images, here, we present an adversarial learning-based strategy to mitigate the domain gap across different phases of multiphase CT scans. We introduce to use Fourier phase component of CT images in order to improve the semantic information and more reliably identify the tumor tissues. Our approach eliminates the requirement for distinct annotations for each phase of CT scans. The experiment results show that our proposed method performs noticeably better than conventional training and other methods.
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Procesamiento de Imagen Asistido por Computador , Neoplasias Hepáticas , Humanos , Procesamiento de Imagen Asistido por Computador/métodos , Tomografía Computarizada por Rayos X/métodos , Neoplasias Hepáticas/diagnóstico por imagenRESUMEN
According to the 2021 World Health Organization IDH status prediction scheme for gliomas, isocitrate dehydrogenase (IDH) is a particularly important basis for glioma diagnosis. In general, 3D multimodal brain MRI is an effective diagnostic tool. However, only using brain MRI data is difficult for experienced doctors to predict the IDH status. Surgery is necessary to be performed for confirming the IDH. Previous studies have shown that brain MRI images of glioma areas contain a lot of useful information for diagnosis. These studies usually need to mark the glioma area in advance to complete the prediction of IDH status, which takes a long time and has high computational cost. The tumor segmentation task model can automatically segment and locate the tumor region, which is exactly the information needed for the IDH prediction task. In this study, we proposed a multi-task deep learning model using 3D multimodal brain MRI images to achieve glioma segmentation and IDH status prediction simultaneously, which improved the accuracy of both tasks effectively. Firstly, we used a segmentation model to segment the tumor region. Also, the whole MRI image and the segmented glioma region features as the global and local features were used to predict IDH status. The effectiveness of the proposed method was validated via a public glioma dataset from the BraTS2020. Our experimental results show that our proposed method outperformed state-of-the-art methods with a prediction accuracy of 88.5% and average dice of 79.8%. The improvements in prediction and segmentation are 3% and 1% compared with the state-of-the-art method, respectively.
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Neoplasias Encefálicas , Glioma , Humanos , Isocitrato Deshidrogenasa/genética , Neoplasias Encefálicas/diagnóstico por imagen , Neoplasias Encefálicas/patología , Mutación , Glioma/diagnóstico por imagen , Glioma/patología , Imagen por Resonancia Magnética/métodosRESUMEN
As the most common malignant tumor worldwide, hepatocellular carcinoma (HCC) has a high rate of death and recurrence, and microvascular invasion (MVI) is considered to be an independent risk factor affecting its early recurrence and poor survival rate. Accurate preoperative prediction of MVI is of great significance for the formulation of individualized treatment plans and long-term prognosis assessment for HCC patients. However, as the mechanism of MVI is still unclear, existing studies use deep learning methods to directly train CT or MR images, with limited predictive performance and lack of explanation. We map the pathological "7-point" baseline sampling method used to confirm the diagnosis of MVI onto MR images, propose a vision-guided attention-enhanced network to improve the prediction performance of MVI, and validate the prediction on the corresponding pathological images reliability of the results. Specifically, we design a learnable online class activation map (CAM) to guide the network to focus on high-incidence regions of MVI guided by an extended tumor mask. Further, an attention-enhanced module is proposed to force the network to learn image regions that can explain the MVI results. The generated attention maps capture long-distance dependencies and can be used as spatial priors for MVI to promote the learning of vision-guided module. The experimental results on the constructed multi-center dataset show that the proposed algorithm achieves the state-of-the-art compared to other models.
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Carcinoma Hepatocelular , Neoplasias Hepáticas , Humanos , Carcinoma Hepatocelular/diagnóstico , Neoplasias Hepáticas/diagnóstico , Reproducibilidad de los Resultados , Estudios Retrospectivos , Invasividad Neoplásica/patologíaRESUMEN
Medical image segmentation is very essential for computer-aided diagnosis in the field of medical imaging. In the last decade, Deep Learning-based frameworks (e.g., UNet) have been widely used in medical applications such as image segmentation tasks. Recently, numerous Transformer-based frameworks are presented for the image segmentation tasks as their design can utilize long-range dependencies. Transformer's design has a weak inductive bias since it does not take advantage of local relationships between pixels and lacks scale invariance. Consequently, Transformers require large datasets for convergence whereas the availability of massive medical datasets is challenging. In this paper, we present a graph-based approach replacing Transformer design to capture long-range dependencies and reduce computational cost. Our proposed framework achieves competitive performance using publicly available dataset Synapse.
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Diagnóstico por Computador , Suministros de Energía Eléctrica , SinapsisRESUMEN
High early recurrence (ER) rate is the main factor leading to the poor outcome of patients with hepatocellular carcinoma (HCC). Accurate preoperative prediction of ER is thus highly desired for HCC treatment. Many radiomics solutions have been proposed for the preoperative prediction of HCC using CT images based on machine learning and deep learning methods. Nevertheless, most current radiomics approaches extract features only from segmented tumor regions that neglect the liver tissue information which is useful for HCC prognosis. In this work, we propose a deep prediction network based on CT images of full liver combined with tumor mask that provides tumor location information for better feature extraction to predict the ER of HCC. While, due to the complex imaging characteristics of HCC, the image-based ER prediction methods suffer from limited capability. Therefore, on the one hand, we propose to employ supervised contrastive loss to jointly train the deep prediction model with cross-entropy loss to alleviate the problem of intra-class variation and inter-class similarity of HCC. On the other hand, we incorporate the clinical data to further improve the prediction ability of the model. Experiments are extensively conducted to verify the effectiveness of our proposed deep prediction model and the contribution of liver tissue for prognosis assessment of HCC.