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1.
Mod Pathol ; 33(9): 1811-1821, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32358589

RESUMEN

There is now evidence that gene fusions activating the MAPK pathway are relatively common in pancreatic acinar cell carcinoma with potentially actionable BRAF or RET fusions being found in ~30%. We sought to investigate the incidence of RAF1 fusions in pancreatic malignancies with acinar cell differentiation. FISH testing for RAF1 was undertaken on 30 tumors comprising 25 'pure' acinar cell carcinomas, 2 mixed pancreatic acinar-neuroendocrine carcinomas, 1 mixed acinar cell-low grade neuroendocrine tumor and 2 pancreatoblastomas. RAF1 rearrangements were identified in 5 cases and confirmed by DNA and RNA sequencing to represent oncogenic fusions (GATM-RAF1, GOLGA4-RAF1, PDZRN3-RAF1, HERPUD1-RAF1 and TRIM33-RAF1) and to be mutually exclusive with BRAF and RET fusions, as well as KRAS mutations. Large genome-wide copy number changes were common and included 1q gain and/or 1p loss in all five RAF1 FISH-positive acinar cell carcinomas. RAF1 expression by immunohistochemistry was found in 3 of 5 (60%) of fusion-positive cases and no FISH-negative cases. Phospho-ERK1/2 expression was found in 4 of 5 RAF1-fusion-positive cases. Expression of both RAF1 and phospho-ERK1/2 was heterogeneous and often only detected at the tumor-stroma interface, thus limiting their clinical utility. We conclude that RAF1 gene rearrangements are relatively common in pancreatic acinar cell carcinomas (14.3% to 18.5% of cases) and can be effectively identified by FISH with follow up molecular testing. The combined results of several studies now indicate that BRAF, RET or RAF1 fusions occur in between one third and one-half of these tumors but are extremely rare in other pancreatic malignancies. As these fusions are potentially actionable with currently available therapies, a strong argument can be made to perform FISH or molecular testing on all pancreatic acinar cell carcinomas.


Asunto(s)
Carcinoma de Células Acinares/genética , Neoplasias Pancreáticas/genética , Proteínas Proto-Oncogénicas c-raf/genética , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Carcinoma de Células Acinares/patología , Bases de Datos Factuales , Femenino , Fusión Génica , Reordenamiento Génico , Humanos , Masculino , Persona de Mediana Edad , Neoplasias Pancreáticas/patología , Adulto Joven
2.
Mol Microbiol ; 113(3): 638-649, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-32185836

RESUMEN

Listeria monocytogenes is a Gram-positive, intracellular pathogen harboring the surface-associated virulence factor InlB, which enables entry into certain host cells. Structurally diverse wall teichoic acids (WTAs), which can also be differentially glycosylated, determine the antigenic basis of the various Listeria serovars. WTAs have many physiological functions; they can serve as receptors for bacteriophages, and provide a substrate for binding of surface proteins such as InlB. In contrast, the membrane-anchored lipoteichoic acids (LTAs) do not show significant variation and do not contribute to serovar determination. It was previously demonstrated that surface-associated InlB non-covalently adheres to both WTA and LTA, mediating its retention on the cell wall. Here, we demonstrate that in a highly virulent serovar 4b strain, two genes gtlB and gttB are responsible for galactosylation of LTA and WTA respectively. We evaluated the InlB surface retention in mutants lacking each of these two genes, and found that only galactosylated WTA is required for InlB surface presentation and function, cellular invasiveness and phage adsorption, while galactosylated LTA plays no role thereof. Our findings demonstrate that a simple pathogen-defining serovar antigen, that mediates bacteriophage susceptibility, is necessary and sufficient to sustain the function of an important virulence factor.


Asunto(s)
Proteínas Bacterianas/metabolismo , Listeria monocytogenes/metabolismo , Proteínas de la Membrana/metabolismo , Ácidos Teicoicos/metabolismo , Proteínas Bacterianas/fisiología , Pared Celular/metabolismo , Glicosilación , Lipopolisacáridos/metabolismo , Listeria monocytogenes/patogenicidad , Proteínas de la Membrana/fisiología , Serogrupo , Virulencia , Factores de Virulencia/metabolismo
3.
Regul Toxicol Pharmacol ; 79: 64-73, 2016 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-27181452

RESUMEN

The use of very low nicotine tobacco cigarettes is currently being investigated as a possible harm reduction strategy. Here, we report the smoke chemistry, toxicity, and physical characteristics of very low nicotine cigarettes that were made using blended tobacco processed through a supercritical CO2 fluid extraction, which resulted in elimination of 96% of nicotine content (denicotinized (denic) tobacco). Three types of test cigarettes (TCs) were manufactured with tobacco filler containing 100% denic tobacco (TC100), 50% denic tobacco and 50% unextracted tobacco (TC50/50), and 100% unextracted tobacco (TC0). Mainstream smoke (MS) was generated for measurement of 46 analytes and cytotoxicity and mutagenicity determination. Analysis of physical characteristics of TCs demonstrated they were well made with <5% variability among cigarettes for most parameters measured. We observed significant changes in the levels of smoke constituents, including decreases in formaldehyde, nitrosamines, and phenol, and increases in aliphatic hydrocarbons, aliphatic nitrogen compounds, aromatic amines, halogen compounds, and metals. Use of denic tobacco resulted in changes in the chemical composition of MS, but these changes did not modify biological activity as measured in the mutagenicity and cytotoxicity assays.


Asunto(s)
Nicotiana/química , Nicotina/análisis , Agonistas Nicotínicos/análisis , Humo/análisis , Fumar , Productos de Tabaco/análisis , Células 3T3 , Animales , Cromatografía con Fluido Supercrítico , Seguridad de Productos para el Consumidor , ADN Bacteriano/efectos de los fármacos , ADN Bacteriano/genética , Fibroblastos/efectos de los fármacos , Fibroblastos/patología , Humanos , Ratones , Mutagénesis , Pruebas de Mutagenicidad , Mutación , Nicotina/toxicidad , Agonistas Nicotínicos/toxicidad , Medición de Riesgo , Salmonella typhimurium/efectos de los fármacos , Salmonella typhimurium/genética , Humo/efectos adversos , Fumar/efectos adversos , Nicotiana/toxicidad , Productos de Tabaco/toxicidad
4.
Regul Toxicol Pharmacol ; 71(2): 225-34, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25572415

RESUMEN

Tobacco toxicant-related exposure reduction is an important tool in harm reduction. Cigarette per day reduction (CPDR) occurs as smokers migrate from smoking cigarettes to using alternative tobacco/nicotine products, or quit smoking. Few reports characterize the dose-response relationships between CPDR and effects on exposure biomarkers, especially at the low end of CPD exposure (e.g., 5 CPD). We present data on CPDR by characterizing magnitudes of biomarker reductions. We present data from a well-controlled, one-week clinical confinement study in healthy smokers who were switched from smoking 19-25 CPD to smoking 20, 10, 5 or 0 CPD. Biomarkers were measured in blood, plasma, urine, and breath, and included smoke-related toxicants, urine mutagenicity, smoked cigarette filter analyses (mouth level exposure), and vital signs. Many of the biomarkers (e.g., plasma nicotine) showed strong CPDR dose-response reductions, while others (e.g., plasma thiocyanate) showed weaker dose-response reductions. Factors that lead to lower biomarker reductions include non-CPD related contributors to the measured response (e.g., other exposure sources from environment, life style, occupation; inter-individual variability). This study confirms CPDR dose-responsive biomarkers and suggests that a one-week design is appropriate for characterizing exposure reductions when smokers switch from cigarettes to new tobacco products.


Asunto(s)
Cese del Hábito de Fumar/métodos , Fumar/metabolismo , Fumar/tendencias , Productos de Tabaco , Adulto , Anciano , Biomarcadores/metabolismo , Relación Dosis-Respuesta a Droga , Femenino , Humanos , Masculino , Persona de Mediana Edad , Fumar/epidemiología , Encuestas y Cuestionarios , Factores de Tiempo , Adulto Joven
5.
Inhal Toxicol ; 25 Suppl 2: 1-5, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341842

RESUMEN

CONTEXT: In addition to tobacco and cigarette ingredients, there are many non-tobacco components and processes used to manufacture commercial cigarettes. Proposed cigarette components and manufacturing process changes were evaluated using a tiered toxicological testing program. OBJECTIVE: The toxicological testing and evaluation of proposed changes to selected non-tobacco cigarette components and manufacturing processes are described in this special report. MATERIALS AND METHODS: Selected non-tobacco cigarette components and manufacturing processes were evaluated using experimental and control cigarettes. These experimental cigarettes were evaluated using mainstream smoke chemistry, bacterial mutagenicity and cytotoxicity assays. In some evaluations, 90-day nose-only mainstream smoke inhalation studies using rats were performed. RESULTS: Some proposed design changes were not implemented, or limitations on their use were established. Most study results, however, were similar to those previously reported in the scientific literature for design changes in cigarette construction. CONCLUSION: The studies reported in the series of publication demonstrate that our testing approach is feasible for evaluation of cigarette component and manufacturing process changes.


Asunto(s)
Seguridad de Productos para el Consumidor , Nicotiana/toxicidad , Humo/efectos adversos , Industria del Tabaco/métodos , Productos de Tabaco/toxicidad , Animales , Humanos , Ensayo de Materiales , Humo/análisis , Nicotiana/química , Productos de Tabaco/análisis , Contaminación por Humo de Tabaco/prevención & control , Pruebas de Toxicidad
6.
Inhal Toxicol ; 25 Suppl 2: 6-18, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341843

RESUMEN

CONTEXT: Adhesives are used in several different manufacturing operations in the production of cigarettes. The use of new, "high-speed-manufacture" adhesives (e.g. vinyl acetate based) could affect the smoke chemistry and toxicology of cigarettes, compared with older "low-speed-manufacture" adhesives (e.g. starch based). OBJECTIVE: This study was conducted to determine whether the inclusion of different levels of three adhesives (ethylene vinyl acetate, polyvinyl acetate and starch) in experimental cigarettes results in different smoke chemistry and toxicological responses in in vitro and in vivo assays. MATERIALS AND METHODS: A battery of tests (analytical chemistry, in vitro and in vivo assays) was used to compare the chemistry and toxicology of smoke from experimental cigarettes made with different combinations of the three adhesives. Varying levels of the different side-seam adhesives, as well as the transfer of adhesives from packaging materials, were tested. RESULTS: There were differences in some mainstream cigarette smoke constituents as a function of the level of adhesive added to experimental cigarettes and between the tested adhesives. None of these differences translated into statistically significant differences in the in vitro or in vivo assays. CONCLUSION: The use of newer "high-speed-manufacture" vinyl acetate-based adhesives in cigarettes does not produce toxicological profiles that prevent the adhesives from replacing the older "low-speed-manufacture" adhesives (such as starch).


Asunto(s)
Adhesivos/toxicidad , Seguridad de Productos para el Consumidor , Polivinilos/toxicidad , Humo/efectos adversos , Productos de Tabaco/toxicidad , Adhesivos/química , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Femenino , Hiperplasia , Exposición por Inhalación/efectos adversos , Masculino , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Polivinilos/química , Embalaje de Productos , Ratas Sprague-Dawley , Mucosa Respiratoria/efectos de los fármacos , Mucosa Respiratoria/patología , Humo/análisis , Organismos Libres de Patógenos Específicos , Almidón/química , Almidón/toxicidad , Nicotiana/química , Nicotiana/toxicidad , Productos de Tabaco/análisis , Pruebas de Toxicidad
7.
Inhal Toxicol ; 25 Suppl 2: 19-33, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341844

RESUMEN

CONTEXT: To comply with state requirements, cigarette manufacturers have added low-permeability bands to the cigarette paper. These bands can extinguish the cigarette when it is no longer being puffed by a smoker. OBJECTIVE: This study was conducted to evaluate the toxicology resulting from the addition of different types of bands to experimental cigarettes. MATERIALS AND METHODS: A battery of assays that are typically used in toxicology studies with cigarette smoke, namely smoke chemistry, in vitro mutagenicity and cytotoxicity, and inhalation studies with rats, were used to evaluate different band characteristics added to cigarette paper. RESULTS: Although differences in the amount of band material was associated with an increase in some metals measured in mainstream tobacco smoke, it was not dose responsive to any band design parameter (base paper permeability, band width, band spacing, band chalk amount, or citrate). Occasional, minor differences were produced by the different types of bands; overall, there was no increased toxicity. CONCLUSION: Although there were increases and decreases in some mainstream smoke constituents, the in vitro and in vivo testing performed demonstrated that low-permeability bands on cigarettes do not modify the toxicity of smoke inhaled by smokers.


Asunto(s)
Celulosa/toxicidad , Seguridad de Productos para el Consumidor , Papel , Humo/efectos adversos , Productos de Tabaco/toxicidad , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Celulosa/química , Lino/química , Lino/toxicidad , Exposición por Inhalación/efectos adversos , Masculino , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Permeabilidad , Distribución Aleatoria , Ratas , Ratas Sprague-Dawley , Humo/análisis , Organismos Libres de Patógenos Específicos , Nicotiana/química , Nicotiana/toxicidad , Productos de Tabaco/análisis , Contaminación por Humo de Tabaco/prevención & control , Pruebas de Toxicidad
8.
Inhal Toxicol ; 25 Suppl 2: 34-45, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341845

RESUMEN

CONTEXT: Cigarettes often have a small identifying mark (monogram) printed either on the cigarette paper toward the filter end of the cigarette or on the tipping paper. OBJECTIVE: A battery of tests was used to compare the toxicology of mainstream smoke from experimental cigarettes manufactured with different monogram inks. Cigarettes with different concentrations of different pigments were compared with cigarettes without ink, and with a control ink. MATERIALS AND METHODS: Smoke from each of the experimental cigarettes was evaluated using analytical chemistry and in vitro bacterial mutagenicity (Salmonella, five strains, ± S9) and cytotoxicity (neutral red uptake) assays. RESULTS: No differences were observed between experimental cigarettes printed with three different pigment loads of iron oxide-based Black pigment and non-printed cigarettes. In general, no dose response was observed. However, increases in certain smoke constituents were found to correlate with Pigment Yellow 14 (also known as benzidine yellow) and Pigment Blue 15 (copper phthalocyanine). Increases in bacterial mutagenicity were observed for high-level print of Pigment Yellow 14 in TA98 and TA1537 and the high-level print of Pigment Blue 15 in TA98. In vitro cytotoxicity of mainstream smoke was unaffected by the presence of monogram ink on cigarettes. CONCLUSION: Statistically significant dose-responsive constituent changes and an increase in mutagenicity were observed with inclusion of Pigment Yellow 14 and Pigment Blue 15. Other pigments showed minimal toxicological activity.


Asunto(s)
Colorantes/toxicidad , Seguridad de Productos para el Consumidor , Tinta , Humo/efectos adversos , Productos de Tabaco/toxicidad , Adhesivos/química , Adhesivos/toxicidad , Filtros de Aire , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Celulosa/análogos & derivados , Celulosa/química , Celulosa/toxicidad , Colorantes/química , Dosificación Letal Mediana , Aceite de Linaza/química , Aceite de Linaza/toxicidad , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Papel , Resinas de Plantas/química , Resinas de Plantas/toxicidad , Humo/análisis , Nicotiana/química , Nicotiana/toxicidad , Productos de Tabaco/análisis , Pruebas de Toxicidad
9.
Inhal Toxicol ; 25 Suppl 2: 46-58, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341846

RESUMEN

CONTEXT: Literature suggests that the width of tobacco strips in cigarettes may affect the smoke chemistry and toxicology of such products. OBJECTIVE: A comprehensive analysis of smoke from experimental cigarettes can be used to determine whether different cut widths of tobacco result in different toxicological activity. MATERIALS AND METHODS: A battery of tests was used to compare the chemistry and in vitro and in vivo toxicology of smoke from experimental cigarettes made with tobacco cut to different widths. RESULTS: Different cut widths of tobacco did not elicit consistent and significant differences in cigarette smoke chemistry, responses in in vitro mutagenicity or cytotoxicity assays or most endpoints in 90-d rat inhalation studies. Of note, however, were atypical in-life observations and slightly depressed body weights observed in two rat inhalation studies. CONCLUSION: Most of our data indicate that different cut widths of tobacco used in cigarettes are unlikely to change the toxicity of mainstream cigarette smoke; however, without additional investigation, the atypical in-life observations and depression in body weights cast doubt on the toxicological acceptability of cutting the tobacco into wider shreds.


Asunto(s)
Seguridad de Productos para el Consumidor , Nicotiana/toxicidad , Hojas de la Planta/toxicidad , Humo/efectos adversos , Industria del Tabaco/métodos , Productos de Tabaco/toxicidad , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Hiperplasia , Exposición por Inhalación/efectos adversos , Masculino , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Hojas de la Planta/química , Ratas , Ratas Sprague-Dawley , Mucosa Respiratoria/efectos de los fármacos , Mucosa Respiratoria/patología , Humo/análisis , Organismos Libres de Patógenos Específicos , Nicotiana/química , Productos de Tabaco/análisis , Pruebas de Toxicidad , Aumento de Peso/efectos de los fármacos
10.
Inhal Toxicol ; 25 Suppl 2: 59-63, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341847

RESUMEN

CONTEXT: Recent technological advances allow ventilation holes in (or adjacent to) cigarette filters to be produced using lasers instead of using the mechanical procedures of earlier techniques. OBJECTIVE: Analytical chemistry can be used to compare the composition of mainstream smoke from experimental cigarettes having filters with mechanically produced ventilation holes to that of cigarettes with ventilation holes that were produced using laser technology. MATERIALS AND METHODS: Established procedures were used to analyze the smoke composition of 38 constituents of mainstream smoke generated using standard conditions. RESULTS: There were no differences between the smoke composition of cigarettes with filter ventilation holes that were produced mechanically or through use of laser technology. CONCLUSION: The two methods for producing ventilation holes in cigarette filters are equivalent in terms of resulting mainstream smoke chemistry, at two quite different filter ventilation percentages.


Asunto(s)
Filtros de Aire , Celulosa/análogos & derivados , Seguridad de Productos para el Consumidor , Nicotiana/química , Humo/análisis , Industria del Tabaco/métodos , Productos de Tabaco/análisis , Adhesivos/química , Adhesivos/toxicidad , Celulosa/química , Celulosa/toxicidad , Lino/química , Lino/toxicidad , Rayos Láser , Ensayo de Materiales , Papel , Plastificantes/química , Plastificantes/toxicidad , Humo/efectos adversos , Propiedades de Superficie , Nicotiana/toxicidad , Industria del Tabaco/instrumentación , Productos de Tabaco/toxicidad , Triacetina/química , Triacetina/toxicidad
11.
Inhal Toxicol ; 25 Suppl 2: 64-8, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341848

RESUMEN

CONTEXT: Manufacture of cigarettes results in tobacco by-products, some of which can be processed and added back to cigarettes. Such additions (known as reconstituted tobacco or reconstituted leaf) have been shown to reduce tar yields. A new process (termed "Deli" cast sheet) is a potential refinement of the reconstitution process. OBJECTIVE: Compare toxicity of smoke from experimental cigarettes made with reconstituted leaf with that from cigarettes made with Deli cast sheet. MATERIALS AND METHODS: Analytical chemistry, Salmonella mutagenicity and cytotoxicity assays were used to evaluate the composition biological activity of mainstream smoke from experimental cigarettes made with Deli cast sheet or with reconstituted leaf. The effect of different amounts of guar and propylene glycol in Deli cast sheet was also evaluated. RESULTS: Small increases in the amount of nitrogen oxides were found as a result of inclusion of the Deli cast sheet when compared with reconstituted leaf; no differences in cytotoxicity or mutagenicity were found. CONCLUSION: The Deli process neither significantly modified chemical composition of smoke nor affected its biological activity, as measured by the mutagenicity and cytotoxicity assays used here.


Asunto(s)
Seguridad de Productos para el Consumidor , Residuos Industriales/efectos adversos , Nicotiana/toxicidad , Hojas de la Planta/toxicidad , Humo/efectos adversos , Productos de Tabaco/efectos adversos , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Galactanos/química , Galactanos/toxicidad , Residuos Industriales/análisis , Residuos Industriales/economía , Mananos/química , Mananos/toxicidad , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Gomas de Plantas/química , Gomas de Plantas/toxicidad , Hojas de la Planta/química , Propilenglicol/química , Propilenglicol/toxicidad , Humo/análisis , Solventes/química , Solventes/toxicidad , Nicotiana/química , Industria del Tabaco/economía , Productos de Tabaco/análisis , Productos de Tabaco/economía , Pruebas de Toxicidad
12.
Inhal Toxicol ; 25 Suppl 2: 69-72, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24341849

RESUMEN

CONTEXT: Historical work indicates that cigarette circumference may affect the toxicological profile of experimental cigarettes. OBJECTIVE: Studies were conducted to examine the effect of different cigarette circumferences on (1) selected mainstream smoke constituents including concentrations of tobacco specific nitrosamines (TSNA) in smoke and (2) mutagenicity and cytotoxicity of cigarette smoke condensate. MATERIALS AND METHODS: Analytical chemistry, Salmonella mutagenicity and cytotoxicity assays were used to evaluate the composition and biological activity of mainstream smoke from experimental, non-filtered cigarettes manufactured with four different circumferences (17.0-27.1 mm). RESULTS: Most smoke constituents, including TSNA, decreased with decreasing cigarette circumference; however, amounts of hydrogen cyanide increased in a non-circumference dependent manner. Mutagenicity and cytotoxicity also decreased slightly with decreasing cigarette circumference. CONCLUSION: Cigarette circumference may have a minor role in the toxicological profile of experimental cigarettes, with a so-far-unidentified mechanism.


Asunto(s)
Seguridad de Productos para el Consumidor , Nicotiana/toxicidad , Hojas de la Planta/toxicidad , Humo/efectos adversos , Productos de Tabaco/toxicidad , Animales , Células 3T3 BALB , Supervivencia Celular/efectos de los fármacos , Fenómenos Químicos , Lino/química , Lino/toxicidad , Cianuro de Hidrógeno/análisis , Cianuro de Hidrógeno/química , Cianuro de Hidrógeno/toxicidad , Dosificación Letal Mediana , Ensayo de Materiales , Ratones , Pruebas de Mutagenicidad , Mutágenos/análisis , Mutágenos/química , Mutágenos/toxicidad , Nitrosaminas/análisis , Nitrosaminas/química , Nitrosaminas/toxicidad , Papel , Hojas de la Planta/química , Humo/análisis , Nicotiana/química , Industria del Tabaco/métodos , Productos de Tabaco/análisis , Pruebas de Toxicidad
13.
Antimicrob Agents Chemother ; 57(7): 3240-9, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23629723

RESUMEN

Vancomycin-intermediate Staphylococcus aureus (VISA) strains often arise by mutations in the essential two-component regulator walKR; however their impact on walKR function has not been definitively established. Here, we investigated 10 MRSA strains recovered serially after exposure of vancomycin-susceptible S. aureus (VSSA) JKD6009 to simulated human vancomycin dosing regimens (500 mg to 4,000 mg every 12 h) using a 10-day hollow fiber infection model. After continued exposure to the vancomycin regimens, two isolates displayed reduced susceptibility to both vancomycin and daptomycin, developing independent IS256 insertions in the walKR 5' untranslated region (5' UTR). Quantitative reverse transcription-PCR (RT-PCR) revealed a 50% reduction in walKR gene expression in the IS256 mutants compared to the VSSA parent. Green fluorescent protein (GFP) reporter analysis, promoter mapping, and site-directed mutagenesis confirmed these findings and showed that the IS256 insertions had replaced two SigA-like walKR promoters with weaker, hybrid promoters. Removal of IS256 reverted the phenotype to VSSA, showing that reduced expression of WalKR did induce the VISA phenotype. Analysis of selected WalKR-regulated autolysins revealed upregulation of ssaA but no change in expression of sak and sceD in both IS256 mutants. Whole-genome sequencing of the two mutants revealed an additional IS256 insertion within agrC for one mutant, and we confirmed that this mutation abolished agr function. These data provide the first substantial analysis of walKR promoter function and show that prolonged vancomycin exposure can result in VISA through an IS256-mediated reduction in walKR expression; however, the mechanisms by which this occurs remain to be determined.


Asunto(s)
Antibacterianos/farmacología , Elementos Transponibles de ADN , Staphylococcus aureus Resistente a Meticilina/genética , Resistencia a la Vancomicina/genética , Vancomicina/farmacología , Proteínas Bacterianas/genética , Secuencia de Bases , ADN Bacteriano/genética , Daptomicina/farmacología , Regulación Bacteriana de la Expresión Génica , Genoma Bacteriano , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Datos de Secuencia Molecular , Mutagénesis Insercional , Mutagénesis Sitio-Dirigida , Peptidoglicano Glicosiltransferasa/genética , Regiones Promotoras Genéticas/genética , Proteínas Quinasas/genética , Análisis de Secuencia de ADN
14.
PLoS One ; 7(4): e30593, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22496726

RESUMEN

Mycobacterium tuberculosis complex (MTBC) genomes contain 2 large gene families termed pe and ppe. The function of pe/ppe proteins remains enigmatic but studies suggest that they are secreted or cell surface associated and are involved in bacterial virulence. Previous studies have also shown that some pe/ppe genes are polymorphic, a finding that suggests involvement in antigenic variation. Using comparative sequence analysis of 18 publicly available MTBC whole genome sequences, we have performed alignments of 33 pe (excluding pe_pgrs) and 66 ppe genes in order to detect the frequency and nature of genetic variation. This work has been supplemented by whole gene sequencing of 14 pe/ppe (including 5 pe_pgrs) genes in a cohort of 40 diverse and well defined clinical isolates covering all the main lineages of the M. tuberculosis phylogenetic tree. We show that nsSNP's in pe (excluding pgrs) and ppe genes are 3.0 and 3.3 times higher than in non-pe/ppe genes respectively and that numerous other mutation types are also present at a high frequency. It has previously been shown that non-pe/ppe M. tuberculosis genes display a remarkably low level of purifying selection. Here, we also show that compared to these genes those of the pe/ppe families show a further reduction of selection pressure that suggests neutral evolution. This is inconsistent with the positive selection pressure of "classical" antigenic variation. Finally, by analyzing such a large number of genes we were able to detect large differences in mutation type and frequency between both individual genes and gene sub-families. The high variation rates and absence of selective constraints provides valuable insights into potential pe/ppe function. Since pe/ppe proteins are highly antigenic and have been studied as potential vaccine components these results should also prove informative for aspects of M. tuberculosis vaccine design.


Asunto(s)
Proteínas Bacterianas/metabolismo , Genes Bacterianos , Variación Genética , Genoma Bacteriano , Mycobacterium tuberculosis/genética , Selección Genética , Tuberculosis/genética , Variación Antigénica , Antígenos Bacterianos/genética , Antígenos Bacterianos/inmunología , Antígenos Bacterianos/metabolismo , Proteínas Bacterianas/inmunología , Estudios de Cohortes , ADN Bacteriano/genética , Evolución Molecular , Humanos , Familia de Multigenes , Mycobacterium tuberculosis/aislamiento & purificación , Mycobacterium tuberculosis/patogenicidad , Filogenia , Análisis de Secuencia de ADN , Tuberculosis/inmunología , Tuberculosis/microbiología
15.
Crit Rev Toxicol ; 42(4): 304-13, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22400986

RESUMEN

Three commercial brands of Swedish snus (SWS), an experimental SWS, and the 2S3 reference moist snuff were each tested in four in vitro toxicology assays. These assays were: Salmonella reverse mutation, mouse lymphoma, in vitro micronucleus, and cytotoxicity. Water extractions of each of the 5 products were tested using several different concentrations; the experimental SWS was also extracted using dimethyl sulfoxide (DMSO). Extraction procedures were verified by nicotine determinations. Results for SWS in the mutagenicity assays were broadly negative: there were occasional positive responses, but these were effectively at the highest concentration only (concentrations well above those suggested by regulatory guidelines), and were often associated with cytotoxicity. The 2S3 reference was unequivocally positive in one of the three conditions of the micronucleus assay (MNA), at the highest concentration only. Positive controls produced the expected responses in each assay. The SWS data are contrasted with data reported for combusted tobacco in the form of cigarettes, where strongly positive responses have been routinely reported for mutagenicity and cytotoxicity. These negative findings in a laboratory setting concur with the large amount of epidemiological data from Sweden, data showing that SWS are associated with considerably lower carcinogenic potential when compared with cigarettes.


Asunto(s)
Tabaco sin Humo/toxicidad , Animales , Carcinógenos/análisis , Carcinógenos/toxicidad , Humanos , Ratones , Pruebas de Mutagenicidad , Nicotina/análisis , Nicotina/toxicidad , Suecia , Tabaco sin Humo/química
16.
PLoS One ; 6(12): e28365, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22162765

RESUMEN

The Beijing strain is one of the most successful genotypes of Mycobacterium tuberculosis worldwide and appears to be highly homogenous according to existing genotyping methods. To type Beijing strains reliably we developed a robust typing scheme using single nucleotide polymorphisms (SNPs) and regions of difference (RDs) derived from whole-genome sequencing data of eight Beijing strains. SNP/RD typing of 259 M. tuberculosis isolates originating from 45 countries worldwide discriminated 27 clonal complexes within the Beijing genotype family. A total of 16 Beijing clonal complexes contained more than one isolate of known origin, of which two clonal complexes were strongly associated with South African origin. The remaining 14 clonal complexes encompassed isolates from different countries. Even highly resolved clonal complexes comprised isolates from distinct geographical sites. Our results suggest that Beijing strains spread globally on multiple occasions and that the tuberculosis epidemic caused by the Beijing genotype is at least partially driven by modern migration patterns. The SNPs and RDs presented in this study will facilitate future molecular epidemiological and phylogenetic studies on Beijing strains.


Asunto(s)
Técnicas de Tipificación Bacteriana , Mycobacterium tuberculosis/metabolismo , Algoritmos , Análisis por Conglomerados , Genes Bacterianos , Genoma Bacteriano , Genotipo , Funciones de Verosimilitud , Modelos Estadísticos , Epidemiología Molecular , Filogenia , Filogeografía , Polimorfismo de Longitud del Fragmento de Restricción , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ADN
17.
PLoS Pathog ; 7(11): e1002359, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22102812

RESUMEN

Antimicrobial resistance in Staphylococcus aureus is a major public health threat, compounded by emergence of strains with resistance to vancomycin and daptomycin, both last line antimicrobials. Here we have performed high throughput DNA sequencing and comparative genomics for five clinical pairs of vancomycin-susceptible (VSSA) and vancomycin-intermediate ST239 S. aureus (VISA); each pair isolated before and after vancomycin treatment failure. These comparisons revealed a frequent pattern of mutation among the VISA strains within the essential walKR two-component regulatory locus involved in control of cell wall metabolism. We then conducted bi-directional allelic exchange experiments in our clinical VSSA and VISA strains and showed that single nucleotide substitutions within either walK or walR lead to co-resistance to vancomycin and daptomycin, and caused the typical cell wall thickening observed in resistant clinical isolates. Ion Torrent genome sequencing confirmed no additional regulatory mutations had been introduced into either the walR or walK VISA mutants during the allelic exchange process. However, two potential compensatory mutations were detected within putative transport genes for the walK mutant. The minimal genetic changes in either walK or walR also attenuated virulence, reduced biofilm formation, and led to consistent transcriptional changes that suggest an important role for this regulator in control of central metabolism. This study highlights the dramatic impacts of single mutations that arise during persistent S. aureus infections and demonstrates the role played by walKR to increase drug resistance, control metabolism and alter the virulence potential of this pathogen.


Asunto(s)
Antibacterianos/farmacología , Proteínas Bacterianas/genética , Farmacorresistencia Bacteriana Múltiple/genética , Staphylococcus aureus/efectos de los fármacos , Staphylococcus aureus/genética , Animales , Antibacterianos/uso terapéutico , Proteínas Bacterianas/metabolismo , Biopelículas , Pared Celular/genética , Pared Celular/metabolismo , Daptomicina/farmacología , Daptomicina/uso terapéutico , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Pruebas de Sensibilidad Microbiana , Tipificación Molecular , Mutación , Polimorfismo de Nucleótido Simple , Infecciones Estafilocócicas/tratamiento farmacológico , Infecciones Estafilocócicas/microbiología , Staphylococcus aureus/metabolismo , Staphylococcus aureus/patogenicidad , Vancomicina/farmacología , Vancomicina/uso terapéutico , Resistencia a la Vancomicina/genética , Factores de Virulencia
18.
Regul Toxicol Pharmacol ; 61(1): 119-28, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21771627

RESUMEN

Ingredients have been used in industrial manufacture of tobacco products since the early part of the 20th century. However, unlike other consumer goods, until now no regulatory authority has determined how tobacco ingredients should be assessed. Although there is currently no consensus on how added cigarette ingredients should be evaluated, this paper reviews some of the institutional guidance alongside published literature with a view to determining if there is a generally accepted approach in the absence of any strict regulation. Our aim was to review the recommendations, to compare them to the working practices as demonstrated from published studies, and to draw conclusions on currently used methodologies for testing ingredients added to cigarettes. The extent of testing is discussed in the light of practical and theoretical constraints and an example of an industry testing program is presented.


Asunto(s)
Inhibidores Enzimáticos/efectos adversos , Nicotiana/efectos adversos , Fumar/efectos adversos , Breas/efectos adversos , Industria del Tabaco/normas , Guías como Asunto , Humanos , Humo
19.
Inhal Toxicol ; 23 Suppl 1: 41-69, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21651429

RESUMEN

CONTEXT: A total of 32 essential oils and resins were added individually to experimental cigarettes. OBJECTIVE: A battery of tests was used to compare the toxicity of mainstream smoke from these experimental cigarettes. The lowest target inclusion level was 100 ppm and the highest was 100,000 ppm. MATERIALS AND METHODS: Smoke from each of the experimental cigarette was evaluated using analytical chemistry and in vitro bacterial (Salmonella, five strains) mutagenicity and cytotoxicity (neutral red uptake) assays. For seven of the ingredients (carob bean, carob bean extract, carrageenan, chamomile flower Hungarian oil, guar gum, peppermint oil, and spearmint oil), 90-day smoke inhalation studies with rats were also performed. RESULTS: In general, inclusion levels resulted in minimal changes in smoke chemistry; the exceptions were PO and SO, where reductions to 40-60% of control values were noted, possibly indicating a tobacco displacement effect. Cytotoxicity and mutagenicity were unaffected by any of the test ingredients, except for a dose-related reduction in cytotoxicity for SO. There were very few statistically significant differences within any of the seven inhalation studies; when present, the differences were sporadic and inconsistent between sexes. The addition of SO appeared to depress body weight gain and increase the atrophy of olfactory epithelia, but only in males. CONCLUSION: The essential oils and resins tested here as ingredients in experimental cigarettes show minimal toxicological sequelae, even at high inclusion levels. The highest inclusion level for SO showed some equivocal responses.


Asunto(s)
Nicotiana/toxicidad , Aceites Volátiles/toxicidad , Resinas de Plantas/toxicidad , Fumar/efectos adversos , Xenobióticos/toxicidad , Administración por Inhalación , Animales , Peso Corporal/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Células Cultivadas , Excipientes/análisis , Excipientes/toxicidad , Femenino , Aromatizantes/análisis , Aromatizantes/toxicidad , Masculino , Aceites Volátiles/análisis , Ratas , Ratas Sprague-Dawley , Resinas de Plantas/análisis , Salmonella typhimurium/efectos de los fármacos , Salmonella typhimurium/genética , Humo/efectos adversos , Humo/análisis , Nicotiana/química , Pruebas de Toxicidad
20.
Inhal Toxicol ; 23 Suppl 1: 70-83, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21651430

RESUMEN

CONTEXT: Cocoa-derived ingredients are used in cigarette tobacco. OBJECTIVE: A battery of tests was used to compare toxicity of mainstream smoke from experimental cigarettes containing different added levels of cocoa-derived ingredients. MATERIALS AND METHODS: Five cocoa-derived ingredients chocolate (CH), cocoa (COC), cocoa-grand prix black (CGPB), cocoa nibs tincture (CNT) and cocoa shells extract (CSE) were added individually to experimental cigarettes at three different levels. Smoke from each of the experimental cigarette types was evaluated using analytical chemistry; in vitro cytotoxicity and mutagenicity testing were performed for four of the five compounds. For CH, COC and CNT, 90-day smoke inhalation studies were performed with 6-week recovery periods. RESULTS: No consistent changes were found in the analytical chemistry results. Results of the cytotoxicity and mutagenicity were unaffected by any of the ingredients. Two of the three inhalation studies showed very few differences between the groups. The inhalation study with COC showed several increases in mean histopathology severity scores in groups exposed to different levels of COC, compared with the controls. These apparent effects of COC on histopathology lesion severity scores were only present in a single sex and none were dose-related, which is not consistent with a true increase in biological activity. Also there were effectively no differences in the patterns of recovery for any of the compounds. CONCLUSIONS: Even at high inclusion levels there was a lack of toxicological response in these COC derived ingredients.


Asunto(s)
Cacao/toxicidad , Nicotiana/toxicidad , Fumar/efectos adversos , Xenobióticos/toxicidad , Administración por Inhalación , Animales , Peso Corporal/efectos de los fármacos , Cacao/química , Supervivencia Celular/efectos de los fármacos , Células Cultivadas , Excipientes/análisis , Excipientes/toxicidad , Femenino , Aromatizantes/análisis , Aromatizantes/toxicidad , Masculino , Mucosa Nasal/efectos de los fármacos , Mucosa Nasal/patología , Ratas , Ratas Sprague-Dawley , Salmonella typhimurium/efectos de los fármacos , Salmonella typhimurium/genética , Humo/efectos adversos , Humo/análisis , Nicotiana/química , Pruebas de Toxicidad
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