Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.

Drought is a major abiotic stress limiting agricultural productivity. Previous field-level experiments have demonstrated that drought decreases microbiome diversity in the root and rhizosphere. How these changes ultimately affect plant health remains elusive. Toward this end, we combined reductionist, transitional and ecological approaches, applied to the staple cereal crop sorghum to identify key root-associated microbes that robustly affect drought-stressed plant phenotypes. Fifty-three Arabidopsis-associated bacteria were applied to sorghum seeds and their effect on root growth was monitored. Two Arthrobacter strains caused root growth inhibition (RGI) in Arabidopsis and sorghum. In the context of synthetic communities, Variovorax strains were able to protect plants from Arthrobacter-caused RGI. As a transitional system, high-throughput phenotyping was used to test the synthetic communities. During drought stress, plants colonized by Arthrobacter had reduced growth and leaf water content. Plants colonized by both Arthrobacter and Variovorax performed as well or better than control plants. In parallel, we performed a field trial wherein sorghum was evaluated across drought conditions. By incorporating data on soil properties into the microbiome analysis, we accounted for experimental noise with a novel method and were able to observe the negative correlation between the abundance of Arthrobacter and plant growth. Having validated this approach, we cross-referenced datasets from the high-throughput phenotyping and field experiments and report a list of bacteria with high confidence that positively associated with plant growth under drought stress. In conclusion, a three-tiered experimental system successfully spanned the lab-to-field gap and identified beneficial and deleterious bacterial strains for sorghum under drought.

Can char carbon enhance soil properties and crop yields in low-carbon soils?

Restoring soil carbon (C) lost due to intensive farming is a long-term endeavor under current conservation management practices. Application of coal combustion residue (293 g C kg-1 ) from a sugar beet (Beta vulgaris L.) processing factory, hereafter referred to as char, could rapidly restore soil C and productivity in degraded croplands, but data on this potential strategy are unavailable. We assessed the impacts of char application to two relatively low-C soils (10.1 and 12.2 g C kg-1 ) and one relatively high-C soil (17.3 g C kg-1 ) on soil C, soil physical and fertility properties, and crop yields in no-till systems in the Great Plains after 2 yr. Char was disked to 15 cm soil depth at char-C application rates ranging from 0 to 19.7 Mg C ha-1 , corresponding to char application rates ranging from 0 to 67.3 Mg ha-1 . The highest char rate increased C concentration in all soils but increased C stock only in low-C soils. Char did not affect soil penetration resistance, available water, aggregate stability, most nutrients, and crop yields. Char application at high rates increased sulfate, Ca, Mg, and Na concentrations but did not influence other properties. Carbon recovery of the char applied at the highest rate varied among soils from 50 to 85%, but the mechanisms for such differences need further investigation. Short-term duration, low char C concentration, and low application rates may explain the limited char effects. Overall, char application at 19.7 Mg char-C ha-1 (i.e., 67.3 Mg char ha-1 ) increased soil C concentration but had negligible effects on other soil properties and crop yields after 2 yr.