[Nitrogen Metabolism and Flora Characteristics of Bacteria Algae Complex System].

In order to denitrify the urban tail water deeply and control the eutrophication of surface water, the molecular biology methods were used to study the nitrogen metabolism performance of the denitrification complex flora and the algal-bacteria symbiotic system. The results showed that the nitrogen metabolism complex flora was high ammonification and denitrification performance. The removal effect of ammonia nitrogen of group JZ was very well in urban tailwater, and the degradation rate was as high as 95%. The removal effect of total nitrogen of group JZ was better than that of group J in the experimental water distribution. High-throughput sequencing showed that the main dominant flora and proportion of group J were Firmicutes 44.53%, Proteobacteria 43.41%, Actinobacteria 5.37%, Bacteroidetes 3.04%, and Chloroflexi 1.35%. The main dominant bacterial groups in the group JZ were 33.89% Cyanobacteria, 25.34% Chloroflexi, 19.38% Proteobacteria, 10.02% Firmicutes, and 4.20% Acidobacteria. The dominant species in group J were compared with those in group JZ; the proportions were 82% and 18% in Firmicutes, 69% and 31% in Proteobacteria, 1% and 99% in Cyanobacteria, 5.1% and 95% in Chloroflexi, 73% and 27% in Actinobacteria. It was concluded that the removal effect of ammonia nitrogen of group JZ was high in the urban tailwater. With the addition and growth of Micrococcus in group J, the nitrogen metabolism flora in group JZ changed accordingly, so as to adapt to the environment in which the dominant algae formed. It forms a new nitrogen metabolism system of bacteria and algae with Micrococcus. This research provides a theoretical and data basis for the application of algal-bacterial co-metabolism systems.

Detangling the Effects of Environmental Filtering and Dispersal Limitation on Aggregated Distributions of Tree and Shrub Species: Life Stage Matters.

The pervasive pattern of aggregated tree distributions in natural communities is commonly explained by the joint effect of two clustering processes: environmental filtering and dispersal limitation, yet little consensus remains on the relative importance of the two clustering processes on tree aggregations. Different life stages of examined species were thought to be one possible explanation of this disagreement, because the effect of environmental filtering and dispersal limitation are expected to increase and decrease with tree life stages, respectively. However, few studies have explicitly tested these expectations. In this study, we evaluated these expectations by three different methods (species-habitat association test based on Poisson Clustering model and spatial point pattern analyses based on Heterogeneous Poisson model and the jointly modeling approach) using 36 species in a 20-ha subtropical forest plot. Our results showed that the percentage of species with significant habitat association increased with life stages, and there were fewer species affected by dispersal limitation in later life stages compared with those in earlier stages. Percentage of variance explained by the environmental filtering and dispersal limitation also increases and decreases with life stages. These results provided a promising alternative explanation on the existing mixed results about the relative importance of the two clustering processes. These findings also highlighted the importance of plant life stages for fully understanding species distributions and species coexistence.

[Topographic distribution patterns of forest gap within an evergreen broad-leaved forest in Tiantong region of Zhejiang Province, Eastern China].

To explore the effects of multi-dimensional topographic factors on forest gap distribution, the forest gaps in a 20 hm2 dynamic monitoring plot of an evergreen broad-leaved forest in Tiantong region of Zhejiang were taken as the objects to study the distribution patterns of the gap fraction, gap density, and gap area under the effects of altitude, slope degree, slope shape, slope aspect, and slope position by using a geographic information system (GIS) software. In the plot, the gap fraction was 13.1% , gap density was 9.5 ind.hm-2, and average gap area was 137.82 m2. Because of the greater intensity of typhoon disturbance at high altitudes, the gap fraction and gap density at the high altitude (> or =500 m) sections were significantly larger than those at the medium and low altitude (<500 m) sections. The heavy precipitation produced by typhoon could easily cause small scale landslide, and thus, lead to the gap fraction and gap density being larger in valley area than in side-slope and ridge. It was suggested that typhoon and its produced heavy precipitation could be the main causes of the significant differences in the forest gaps along the gradients of altitude and slope position.

A proteome-wide visual screen identifies fission yeast proteins localizing to DNA double-strand breaks.

DNA double-strand breaks (DSBs) are a major threat to genome integrity. Proteins involved in DNA damage checkpoint signaling and DSB repair often relocalize and concentrate at DSBs. Here, we used an ORFeome library of the fission yeast Schizosaccharomyces pombe to systematically identify proteins targeted to DSBs. We found 51 proteins that, when expressed from a strong exogenous promoter on the ORFeome plasmids, were able to form a distinct nuclear focus at an HO endonuclease-induced DSB. The majority of these proteins have known connections to DNA damage response, but few have been visualized at a specific DSB before. Among the screen hits, 37 can be detected at DSBs when expressed from native promoters. We classified them according to the focus emergence timing of the endogenously tagged proteins. Eight of these 37 proteins are yet unnamed. We named these eight proteins DNA-break-localizing proteins (Dbls) and performed preliminary functional analysis on two of them, Dbl1 (SPCC2H8.05c) and Dbl2 (SPCC553.01c). We found that Dbl1 and Dbl2 contribute to the normal DSB targeting of checkpoint protein Rad26 (homolog of human ATRIP) and DNA repair helicase Fml1 (homolog of human FANCM), respectively. As the first proteome-wide inventory of DSB-localizing proteins, our screen result will be a useful resource for understanding the mechanisms of eukaryotic DSB response.

[Effects of thermal stratification on spring blooms in Xiangxi Bay of the Three Gorges Reservoir].

Frequent spring blooms have been observed in tributary bays of the Three Gorges Reservoir (TGR) since its initial filling. In order to identify the primary factor controlling spring blooms, a field monitoring plan was carried out in Xiangxi Bay, the largest tributary of TGR head area in spring 2010. The environmental factors such as water temperature, Secchi depth, underwater illumination and nutrients were monitored. The results showed that the sudden decrease of mixing depth resulting from the development of thermal stratification was the direct and primary contributor to the onset of spring blooms (Pearson correlation coefficient of the ratio of euphotic depth to mixing depth (Z(eu)/Z(mix)) and chlorophyll-a (Chl-a) is 0.934, P < 0.01). The significant response of spring blooms to thermal stratification indicates that Critical Depth model can be applied to tributary bays of TGR, which will provide important references for the investigators and managers who are working on the prediction and control of algal blooms in the bays.

[Spatial heterogeneity of soil properties and its relationships with terrain factors in broad-leaved forest in Tiantong of Zhejiang Province, East China].

By using geostatistical methods, this paper studied the spatial heterogeneity and distribution patterns of soil pH, total carbon, total nitrogen, and total phosphorus in an evergreen broad-leaved forest in Tiantong of Zhejiang Province, and the effects of terrain factors (elevation, convexity, and slope) on the soil properties were quantified based on RDA ordination and partial regression analysis. The coefficient of variation for the soil pH, total carbon, total nitrogen, and total phosphorus was 5.18%, 42.98%, 36.55%, and 46.27%, respectively, and the spatial dependence of the soil properties was at a scale of 81.6-54.5 m. The soil pH, total carbon, and total nitrogen had moderate spatial autocorrelation, while the soil total phosphorus had a strong spatial autocorrelation. The soil pH, total carbon, and total nitrogen showed scattered spatial distribution, while the soil total phosphorus presented banded type. Among the terrain factors, convexity had the strongest effects on the soil pH and total phosphorus, both of which had negative correlation with convexity, and the convexity could explain 21.24% and 14.62% of the spatial variability of soil pH and total phosphorus, respectively. Elevation had the most powerful effects on the soil total carbon and total nitrogen, both of which had positive correlation with elevation, and the elevation could explain 10.54% and 10.60% of the spatial variability of soil total carbon and total nitrogen, respectively. There existed differences in the effects of different terrain factors on the spatial variability of the soil properties, which was related to the effects of terrain factors on the distribution of acidic rainfall in the region and on the local soil moisture content and air temperature.

The anti-botulism triterpenoid toosendanin elicits calcium increase and exocytosis in rat sensory neurons.

Toosendanin, a triterpenoid from Melia toosendan Sieb et Zucc, has been found before to be an effective anti-botulism agent, with a bi-phasic effect at both motor nerve endings and central synapse: an initial facilitation followed by prolonged depression. Initial facilitation may be due to activation of voltage-dependent calcium channels plus inhibition of potassium channels, but the depression is not fully understood. Toosendanin has no effect on intracellular calcium or secretion in the non-excitable pancreatic acinar cells, ruling out general toosendanin inhibition of exocytosis. In this study, toosendanin effects on sensory neurons isolated from rat nodose ganglia were investigated. It was found that toosendanin stimulated increases in cytosolic calcium and neuronal exocytosis dose dependently. Experiments with membrane potential indicator bis-(1,3-dibutylbarbituric acid)trimethine oxonol found that toosendanin hyperpolarized capsaicin-insensitive but depolarized capsaicin-sensitive neurons; high potassium-induced calcium increase was much smaller in hyperpolarizing neurons than in depolarizing neurons, whereas no difference was found for potassium-induced depolarization in these two types of neurons. In neurons showing spontaneous calcium oscillations, toosendanin increased the oscillatory amplitude but not frequency. Toosendanin-induced calcium increase was decreased in calcium-free buffer, by nifedipine, and by transient receptor potential vanilloid 1 (TRPV1) antagonist capsazepine. Simultaneous measurements of cytosolic and endoplasmic reticulum (ER) calcium showed an increase in cytosolic but a decrease in ER calcium, indicating that toosendanin triggered ER calcium release. These data together indicate that toosendanin modulates sensory neurons, but had opposite effects on membrane potential depending on the presence or absence of capsaicin receptor/TRPV 1 channel.

UVA-induced calcium oscillations in rat mast cells.

UVA is a major bio-active component in solar irradiation, and is shown to have immunomodulatory and anti-inflammatory effects. The detailed molecular mechanism of UVA action in regard to calcium signaling in mast cells, however, is not fully understood. In this study, it was found that UVA induced ROS formation and cytosolic calcium oscillations in individual rat mast cells. Exogenously added H2O2 and hypoxanthine/xanthine oxidase (HX/XOD) mimicked UVA effects on cytosolic calcium increases. Regular calcium oscillation induced by UVA irradiation was inhibited completely by the phosphatidylinositol-specific phospholipase C inhibitor U73122, but U73343 was without effect. Tetrandrine, a calcium entry blocker, or calcium-free buffer abolished UVA-induced calcium oscillations. L-type calcium channel blocker nifedipine and stores-operated calcium channel blocker SK&F96365 had no such inhibitory effect. ROS induction by UVA was abolished after pre-incubation with anti-oxidant NAC or with NAD(P)H oxidase inhibitor DPI; such treatment also made UVA-induced calcium oscillation to disappear. UVA irradiation did not increase mast cell diameter, but it made mast cell structure more granular. Spectral confocal imaging revealed that the emission spectrum of the endogenous fluorophore in single mast cell contained a sizable peak which corresponded to that of NAD(P)H. Taken together, these data suggest that UVA in rat mast cells could activate NAD(P)H oxidase, to produce ROS, which in turn activates phospholipase C signaling, to trigger regular cytosolic calcium oscillation.