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1.
Biotechnol J ; 19(2): e2300512, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-37986207

RESUMEN

Plants are gaining traction as a cost-effective and scalable platform for producing recombinant proteins. However, expressing integral membrane proteins in plants is challenging due to their hydrophobic nature. In our study, we used transient and stable expression systems in Nicotiana benthamiana and Camelina sativa respectively to express SARS-CoV-2 E and M integral proteins, and target them to lipid droplets (LDs). LDs offer an ideal environment for folding hydrophobic proteins and aid in their purification through flotation. We tested various protein fusions with different linkers and tags and used three dimensional structure predictions to assess their effects. E and M mostly localized in the ER in N. benthamiana leaves but E could be targeted to LDs in oil accumulating tobacco when fused with oleosin, a LD integral protein. In Camelina sativa seeds, E and M were however found associated with purified LDs. By enhancing the accumulation of E and M within LDs through oleosin, we enriched these proteins in the purified floating fraction. This strategy provides an alternative approach for efficiently producing and purifying hydrophobic pharmaceuticals and vaccines using plant systems.


Asunto(s)
COVID-19 , Gotas Lipídicas , Gotas Lipídicas/metabolismo , SARS-CoV-2/genética , Plantas/metabolismo , Nicotiana/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo
2.
Foods ; 12(1)2023 Jan 03.
Artículo en Inglés | MEDLINE | ID: mdl-36613428

RESUMEN

Exploring and deciphering the biodiversity of oil bodies (OBs) recovered from oilseeds are of growing interest in the preparation of sustainable, natural and healthy plant-based food products. This study focused on chia (Salvia hispanica L.) and camelina (Camelina sativa L.) seed OBs. A green refinery process including ultrasound to remove mucilage, aqueous extraction by grinding and centrifugation to recover OBs from the seeds was used. The microstructure, composition and physical stability of the OBs were examined. Confocal laser scanning microscopy images showed that chia and camelina seed OBs are spherical assemblies coated by a layer of phospholipids and proteins, which have been identified by gel electrophoresis. The mean diameters determined by laser light scattering measurements were 2.3 and 1.6 µm for chia and camelina seed OBs, respectively. The chia and camelina seed OBs were rich in lipids and other bioactive components with, respectively, 64% and 30% α-linolenic acid representing 70% and 53% of the total fatty acids in the sn-2 position of the triacylglycerols, 0.23% and 0.26% phospholipids, 3069 and 2674 mg/kg oil of ß-sitosterol, and lipophilic antioxidants: 400 and 670 mg/kg oil of γ-tocopherol. Phenolic compounds were recovered from the aqueous extracts, such as rutin from camelina and caffeic acid from chia. Zeta-potential measurements showed changes from about -40 mV (pH 9) to values that were positive below the isoelectric points of pH 5.1 and 3.6 for chia and camelina seed OBs, respectively. Below pH 6.5, physical instability of the natural oil-in-water emulsions with aggregation and phase separation was found. This study will contribute to the development of innovative and sustainable food products based on natural oil-in-water emulsions containing chia and camelina seed OBs for their nutritional and health benefits.

3.
J Synchrotron Radiat ; 27(Pt 3): 772-778, 2020 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-32381780

RESUMEN

A lipid droplet (LD) core of a cell consists mainly of neutral lipids, triacylglycerols and/or steryl esters (SEs). The structuration of these lipids inside the core is still under debate. Lipid segregation inside LDs has been observed but is sometimes suggested to be an artefact of LD isolation and chemical fixation. LD imaging in their native state and in unaltered cellular environments appears essential to overcome these possible technical pitfalls. Here, imaging techniques for ultrastructural study of native LDs in cellulo are provided and it is shown that LDs are organized structures. Cryo soft X-ray tomography and deep-ultraviolet (DUV) transmittance imaging are showing a partitioning of SEs at the periphery of the LD core. Furthermore, DUV transmittance and tryptophan/tyrosine auto-fluorescence imaging on living cells are combined to obtain complementary information on cell chemical contents. This multimodal approach paves the way for a new label-free organelle imaging technique in living cells.


Asunto(s)
Gotas Lipídicas/química , Gotas Lipídicas/ultraestructura , Imagen Multimodal , Microscopía por Crioelectrón , Saccharomyces cerevisiae , Sincrotrones , Triglicéridos/química
4.
Arch Biochem Biophys ; 579: 47-54, 2015 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-26032334

RESUMEN

Caleosin, a calcium-binding protein associated with plant lipid droplets, stimulates lipid accumulation when heterologously expressed in Saccharomyces cerevisiae. Accumulated lipids are stored in cytoplasmic lipid droplets that are stabilised by incorporated caleosin. We designed a set of mutants affecting putative crucial sites for caleosin function and association with lipid droplets, i.e. the N-terminus, the EF-hand motif and the proline-knot motif. We investigated the effect of introduced mutations on caleosin capacity to initiate lipid accumulation and on caleosin sorting within cell as well as on its association with lipid droplets. Our results strongly suggest that the N-terminal domain is essential for proper protein sorting and targeting to lipid droplets but not for enhancing lipid accumulation.


Asunto(s)
Arabidopsis/metabolismo , Proteínas de Unión al Calcio/metabolismo , Gotas Lipídicas/química , Gotas Lipídicas/metabolismo , Metabolismo de los Lípidos/fisiología , Proteínas de Plantas/metabolismo , Semillas/metabolismo , Arabidopsis/genética , Sitios de Unión , Proteínas de Unión al Calcio/química , Lípidos/química , Proteínas de Plantas/química , Unión Proteica , Proteínas Recombinantes , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Semillas/química , Relación Estructura-Actividad
5.
Biol Open ; 4(7): 764-75, 2015 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-25948753

RESUMEN

It has now been clearly shown that lipid droplets (LDs) play a dynamic role in the cell. This was reinforced by LD proteomics which suggest that a significant number of trafficking proteins are associated with this organelle. Using microscopy, we showed that LDs partly co-localize with the vacuole in S. cerevisiae. Immunoblot experiments confirmed the association of the vacuolar Rab GTPase Rab7-like Ypt7p with LDs. We observed an increase in fatty acid content and LD number in ypt7Δ mutant and also changes in LD morphology and intra LD fusions, revealing a direct role for Ypt7p in LD dynamics. Using co-immunoprecipitation, we isolated potential Ypt7p partners including, Vma13p, the H subunit of the V1 part of the vacuolar (H+) ATPase (V-ATPase). Deletion of the VMA13 gene, as well as deletion of three other subunits of the V1 part of the V-ATPase, also increased the cell fatty acid content and LD number. Mutants of the Homotypic fusion and vacuole protein sorting (HOPS) complex showed similar phenotypes. Here, we demonstrated that LD dynamics and membrane trafficking between the vacuole and LDs are regulated by the Rab7-like Ypt7p and are impaired when the HOPS complex and the V1 domain of the V-ATPase are defective.

6.
BMC Evol Biol ; 15: 97, 2015 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-26018144

RESUMEN

BACKGROUND: Yeasts belonging to the subphylum Saccharomycotina have been used for centuries in food processing and, more recently, biotechnology. Over the past few decades, these yeasts have also been studied in the interest of their potential to produce oil to replace fossil resources. Developing yeasts for massive oil production requires increasing yield and modifying the profiles of the fatty acids contained in the oil to satisfy specific technical requirements. For example, derivatives of medium-chain fatty acids (MCFAs, containing 6-14 carbons) are used for the production of biodiesels, cleaning products, lubricants and cosmetics. Few studies are available in the literature on the production of MCFAs in yeasts. RESULTS: We analyzed the MCFA content in Saccharomyces cerevisiae grown in various conditions. The results revealed that MCFAs preferentially accumulated when cells were grown on synthetic media with a high C/N ratio at low temperature (23 °C). Upon screening deletion mutant strains for genes encoding lipid droplet-associated proteins, we found two genes, LOA1 and TGL3, involved in MCFA homeostasis. A phylogenetic analysis on 16 Saccharomycotina species showed that fatty acid profiles differed drastically among yeasts. Interestingly, MCFAs are only present in post-whole genome duplication yeast species. CONCLUSIONS: In this study, we produced original data on fatty acid diversity in yeasts. We demonstrated that yeasts are amenable to genetic and metabolic engineering to increase their MCFA production. Furthermore, we revealed that yeast lipid biodiversity has not been fully explored, but that yeasts likely harbor as-yet-undiscovered strains or enzymes that can contribute to the production of high-value fatty acids for green chemistry.


Asunto(s)
Ascomicetos/clasificación , Ascomicetos/metabolismo , Ácidos Grasos/análisis , Ácidos Grasos/biosíntesis , Saccharomyces cerevisiae/metabolismo , Ascomicetos/química , Ascomicetos/genética , Ácidos Grasos/metabolismo , Duplicación de Gen , Genoma Fúngico , Filogenia , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética
7.
Plant Cell Physiol ; 56(7): 1374-87, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25907570

RESUMEN

In oleaginous seeds, lipids--stored in organelles called oil bodies (OBs)--are degraded post-germinatively to provide carbon and energy for seedling growth. To date, little is known about how OB coat proteins, known as oleosins, control OB dynamics during seed germination. Here, we demonstrated that the sequential proteolysis of the five Arabidopsis thaliana oleosins OLE1-OLE5 begins just prior to lipid degradation. Several post-translational modifications (e.g. phosphorylation and ubiquination) of oleosins were concomitant with oleosin degradation. Phosphorylation occurred only on the minor OLE5 and on an 8 kDa proteolytic fragment of OLE2. A combination of immunochemical and proteomic approaches revealed ubiquitination of the four oleosins OLE1-OLE4 at the onset of OB mobilization. Ubiquitination topology was surprisingly complex. OLE1 and OLE2 were modified by three distinct and predominantly exclusive motifs: monoubiquitin, K48-linked diubiquitin (K48Ub(2)) and K63-linked diubiquitin. Ubiquitinated oleosins may be channeled towards specific degradation pathways according to ubiquitination type. One of these pathways was identified as the ubiquitin-proteasome pathway. A proteasome inhibitor (MG132) reduced oleosin degradation and induced cytosolic accumulation of K48Ub(2)-oleosin aggregates. These results indicate that K48Ub(2)-modified oleosins are selectively extracted from OB coat and degraded by the proteasome. Proteasome inhibition also reduced lipid hydrolysis, providing in vivo evidence that oleosin degradation is required for lipid mobilization.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Gotas Lipídicas/metabolismo , Plantones/metabolismo , Ubiquitina/metabolismo , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Proteínas de Arabidopsis/genética , Inhibidores de Cisteína Proteinasa/farmacología , Germinación , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Immunoblotting , Leupeptinas/farmacología , Microscopía Confocal , Fosforilación , Plantas Modificadas Genéticamente , Complejo de la Endopetidasa Proteasomal/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteolisis/efectos de los fármacos , Proteómica/métodos , Plantones/genética , Plantones/crecimiento & desarrollo , Semillas/genética , Semillas/crecimiento & desarrollo , Semillas/metabolismo , Factores de Tiempo , Ubiquitinación
8.
PLoS One ; 8(9): e74421, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24040242

RESUMEN

In most organisms, storage lipids are packaged into specialized structures called lipid droplets. These contain a core of neutral lipids surrounded by a monolayer of phospholipids, and various proteins which vary depending on the species. Hydrophobic structural proteins stabilize the interface between the lipid core and aqueous cellular environment (perilipin family of proteins, apolipoproteins, oleosins). We developed a genetic approach using heterologous expression in Saccharomyces cerevisiae of the Arabidopsis thaliana lipid droplet oleosin and caleosin proteins AtOle1 and AtClo1. These transformed yeasts overaccumulate lipid droplets, leading to a specific increase in storage lipids. The phenotype of these cells was explored using synchrotron FT-IR microspectroscopy to investigate the dynamics of lipid storage and cellular carbon fluxes reflected as changes in spectral fingerprints. Multivariate statistical analysis of the data showed a clear effect on storage carbohydrates and more specifically, a decrease in glycogen in our modified strains. These observations were confirmed by biochemical quantification of the storage carbohydrates glycogen and trehalose. Our results demonstrate that neutral lipid and storage carbohydrate fluxes are tightly connected and co-regulated.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/química , Proteínas de Unión al Calcio/metabolismo , Lípidos/química , Orgánulos/metabolismo , Proteínas de Plantas/metabolismo , Saccharomyces cerevisiae/metabolismo , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Proteínas de Unión al Calcio/química , Proteínas de Unión al Calcio/genética , Expresión Génica , Glucógeno/metabolismo , Análisis Multivariante , Orgánulos/química , Orgánulos/ultraestructura , Proteínas de Plantas/química , Proteínas de Plantas/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/ultraestructura , Análisis de la Célula Individual , Espectroscopía Infrarroja por Transformada de Fourier/métodos , Sincrotrones , Trehalosa/metabolismo
9.
Appl Environ Microbiol ; 79(19): 5907-17, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23872561

RESUMEN

Streptomyces lividans TK24 is a strain that naturally produces antibiotics at low levels, but dramatic overproduction of antibiotics occurs upon interruption of the ppk gene. However, the role of the Ppk enzyme in relation to the regulation of antibiotic biosynthesis remains poorly understood. In order to gain a better understanding of the phenotype of the ppk mutant, the proteomes of the wild-type (wt) and ppk mutant strains, grown for 96 h on R2YE medium limited in phosphate, were analyzed. Intracellular proteins were separated on two-dimensional (2D) gels, spots were quantified, and those showing a 3-fold variation or more were identified by mass spectrometry. The expression of 12 proteins increased and that of 29 decreased in the ppk mutant strain. Our results suggested that storage lipid degradation rather than hexose catabolism was taking place in the mutant. In order to validate this hypothesis, the triacylglycerol contents of the wt and ppk mutant strains of S. lividans as well as that of Streptomyces coelicolor M145, a strain that produces antibiotics at high levels and is closely related to S. lividans, were assessed using electron microscopy and thin-layer chromatography. These studies highlighted the large difference in triacylglycerol contents of the three strains and confirmed the hypothetical link between storage lipid metabolism and antibiotic biosynthesis in Streptomyces.


Asunto(s)
Antibacterianos/biosíntesis , Proteínas Bacterianas/análisis , Metabolismo de los Lípidos , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Proteoma/análisis , Streptomyces lividans/enzimología , Streptomyces lividans/metabolismo , Electroforesis en Gel Bidimensional , Eliminación de Gen , Espectrometría de Masas , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Streptomyces lividans/genética
10.
Biochim Biophys Acta ; 1828(8): 1881-8, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23603223

RESUMEN

In cells, from bacteria to plants or mammals, lipids are stored in natural emulsions called oil bodies (OBs). This organelle is surrounded by a phospholipid monolayer which is thought to contain integral proteins involved in its stabilization. The insertion and fold of these proteins into the phospholipid monolayer are poorly understood. In seed OBs, the most abundant integral proteins are oleosins, which contain a 70-residue central hydrophobic domain. The secondary structure of solubilized oleosins varies greatly from mainly alpha helices to a predominantly beta sheets depending on the detergent used. To study the fold of integral membrane proteins inserted in a cellular OB environment, S3 protein, the major Arabidopsis thaliana seed oleosin, was targeted to Saccharomyces cerevisiae OBs. The diameter of purified yeast OBs harboring S3 or S3 fused with the Green Fluorescent Protein (GFP) was smaller and more homogeneous than plant OBs. Comparison of the secondary structure of S3 and S3-GFP was used to validate the structure of folded S3. Circular dichroism using synchrotron radiation indicated that S3 and S3-GFP in yeast OBs contain mainly beta secondary structures. While yeast OBs are chemically different to A. thaliana seed OBs, this approach allowed the secondary structure of S3 in OB particles to be determined for the first time.


Asunto(s)
Proteínas de Arabidopsis/química , Arabidopsis/metabolismo , Membrana Celular/química , Aceites/química , Pliegue de Proteína , Proteínas Recombinantes de Fusión/metabolismo , Saccharomyces cerevisiae/metabolismo , Proteínas de Arabidopsis/metabolismo , Membrana Celular/metabolismo , Dicroismo Circular , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Interacciones Hidrofóbicas e Hidrofílicas , Immunoblotting , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Microscopía Fluorescente , Aceites/metabolismo , Fosforilcolina/análogos & derivados , Fosforilcolina/química , Estructura Secundaria de Proteína , Proteínas Recombinantes de Fusión/genética
11.
PLoS One ; 7(11): e49261, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-23145136

RESUMEN

Oil from oleaginous seeds is mainly composed of triacylglycerols. Very long chain fatty acids (VLCFAs) are major constituents of triacylglycerols in many seed oils and represent valuable feedstock for industrial purposes. To identify genetic factors governing natural variability in VLCFA biosynthesis, a quantitative trait loci (QTL) analysis using a recombinant inbred line population derived from a cross between accessions Bay-0 and Shahdara was performed in Arabidopsis thaliana. Two fatty acid chain length ratio (CLR) QTL were identified, with one major locus, CLR.2, accounting for 77% of the observed phenotypic variation. A fine mapping and candidate gene approach showed that a key enzyme of the fatty acid elongation pathway, the ß-ketoacyl-CoA synthase 18 (KCS18), was responsible for the CLR.2 QTL detected between Bay-0 and Shahdara. Association genetics and heterologous expression in yeast cells identified a single point mutation associated with an alteration of KCS18 activity, uncovering the molecular bases for the modulation of VLCFA content in these two natural populations of Arabidopsis. Identification of this kcs18 mutant with altered activity opens new perspectives for the modulation of oil composition in crop plants.


Asunto(s)
3-Oxoacil-(Proteína Transportadora de Acil) Sintasa/fisiología , Proteínas de Arabidopsis/fisiología , Arabidopsis/metabolismo , Ácidos Grasos/metabolismo , Semillas/metabolismo , 3-Oxoacil-(Proteína Transportadora de Acil) Sintasa/genética , 3-Oxoacil-(Proteína Transportadora de Acil) Sintasa/metabolismo , Sustitución de Aminoácidos , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Mapeo Cromosómico , Cromosomas de las Plantas , Cruzamientos Genéticos , Ácidos Grasos/química , Estudios de Asociación Genética , Fenotipo , Mutación Puntual , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Isoformas de Proteínas/fisiología , Estructura Terciaria de Proteína , Sitios de Carácter Cuantitativo , Semillas/genética
12.
Plant Physiol Biochem ; 49(3): 352-6, 2011 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-21251844

RESUMEN

The seed oil of Jatropha curcas has been proposed as a source of biodiesel. In plants, seed oil is stored in subcellular organelles called oil bodies (OBs), which are stabilized by proteins. Proteome composition of the J. curcas OBs revealed oleosins as the major component and additional proteins similar to those in other oil seed plants. Three J. curcas oleosins were isolated and characterized at the gene, transcript and protein level. They all contained the characteristic proline knot domain and were each present as a single copy in the genome. The smallest, L-form JcOle3 contained an intron. Isolation of its promoter revealed seed-specific cis-regulatory motifs among others. Spatio-temporal transcript expression of J. curcas oleosins was largely similar to that in other oil seed plants. Immunoassay with antibodies against an Arabidopsis oleosin or against JcOle3, on seed proteins extracted by different approaches, revealed JcOle3 oligomers. Alleles of JcOle3 and single nucleotide polymorphisms (SNPs) in its intron were identified in J. curcas accessions, species and hybrids. Identified alleles and SNPs could serve as markers in phylogenetic or breeding studies.


Asunto(s)
Genes de Plantas , Jatropha/genética , Filogenia , Aceites de Plantas , Proteínas de Plantas/genética , Semillas/metabolismo , Alelos , Proteínas de Arabidopsis/metabolismo , Expresión Génica , Marcadores Genéticos , Genoma , Intrones , Jatropha/metabolismo , Orgánulos/metabolismo , Proteínas de Plantas/metabolismo , Polimorfismo de Nucleótido Simple , Regiones Promotoras Genéticas , Estructura Terciaria de Proteína , Proteoma
13.
FEMS Yeast Res ; 9(3): 428-38, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19220478

RESUMEN

Proteomic approaches on lipid bodies have led to the identification of proteins associated with this compartment, showing that, rather than the inert fat depot, lipid droplets appear as complex dynamic organelles with roles in metabolism control and cell signaling. We focused our investigations on caleosin [Arabidopsis thaliana caleosin 1 (AtClo1)], a minor protein of the Arabidopsis thaliana seed lipid body. AtClo1 shares an original triblock structure, which confers to the protein the capacity to insert at the lipid body surface. In addition, AtClo1 possesses a calcium-binding domain. The study of plants deficient in caleosin revealed its involvement in storage lipid degradation during seed germination. Using Saccharomyces cerevisiae as a heterologous expression system, we investigated the potential role of AtClo1 in lipid body biogenesis and filling. The green fluorescent protein-tagged protein was correctly targeted to lipid bodies. We observed an increase in the number and size of lipid bodies. Moreover, transformed yeasts accumulated more fatty acids (+46.6%). We confirmed that this excess of fatty acids was due to overaccumulation of lipid body neutral lipids, triacylglycerols and steryl esters. We showed that the original intrinsic properties of AtClo1 protein were sufficient to generate a functional lipid body membrane and to promote overaccumulation of storage lipids in yeast oil bodies.


Asunto(s)
Arabidopsis/genética , Proteínas de Unión al Calcio/biosíntesis , Proteínas de Unión al Calcio/genética , Metabolismo de los Lípidos , Proteínas de Plantas/biosíntesis , Proteínas de Plantas/genética , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Fusión Artificial Génica , Genes Reporteros , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Orgánulos/metabolismo , Orgánulos/ultraestructura , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética
14.
Traffic ; 9(8): 1372-91, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18489705

RESUMEN

Eukaryotic plasma membrane transporters are subjected to a tightly regulated intracellular trafficking. The yeast siderophore iron transporter1 (Sit1) displays substrate-regulated trafficking. It is targeted to the plasma membrane or to a vacuolar degradative pathway when synthesized in the presence or absence of external substrate, respectively. Sorting of Sit1 to the vacuolar pathway is dependent on the clathrin adaptor Gga2, and more specifically on its C-GAT subdomain. Plasma membrane undergoes substrate-induced ubiquitylation dependent on the Rsp5 ubiquitin protein ligase. Sit1 is also ubiquitylated in an Rsp5-dependent manner in internal compartments when expressed in the absence of substrate. In several rsp5 mutants including cells deleted for RSP5, Sit1 expressed in the absence of substrate is correctly targeted to the endosomal pathway but its sorting to multivesicular bodies (MVBs) is impaired. Consequently, it displays endosome to plasma membrane targeting, with kinetics similar to those observed in vps mutants defective for MVB sorting. Plasma membrane Sit1 is modified by Lys63-linked ubiquitin chains. We also show for the first time in yeast that modification by this latter type of ubiquitin chains is required directly or indirectly for efficient MVB sorting, as it is for efficient internalization at the plasma membrane.


Asunto(s)
Proteínas de Transporte de Membrana/fisiología , Proteínas de Saccharomyces cerevisiae/fisiología , Saccharomyces cerevisiae/fisiología , Sideróforos/metabolismo , Ubiquitina/química , Proteínas Adaptadoras del Transporte Vesicular/metabolismo , Transporte Biológico , Membrana Celular/metabolismo , Endocitosis , Complejos de Clasificación Endosomal Requeridos para el Transporte , Proteínas Fluorescentes Verdes/metabolismo , Proteínas de Transporte de Membrana/química , Proteínas de Transporte de Membrana/metabolismo , Modelos Biológicos , Mutación , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/metabolismo , Especificidad por Sustrato , Ubiquitina/metabolismo , Complejos de Ubiquitina-Proteína Ligasa/metabolismo
15.
J Agric Food Chem ; 55(24): 10008-15, 2007 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-17966978

RESUMEN

Oleosins are hydrophobic proteins from oleaginous seeds, surrounding and stabilizing oil bodies. They are known to display interesting interfacial properties. Specific sera were raised against four different A. thaliana oleosins and used in dot-blot assays for oleosin quantification. These assays were used to set up extraction of oleosins from A. thaliana seeds. One mixture of chloroform/methanol gave optimal oleosin extraction. Extracted proteins represented 9% of seed proteins and were identified by immunoblot and proteomic analyses. Oleosins accounted for 79% of the extracted proteins. This simple one-step procedure allows selective extraction and concentration of oleosins from seeds without tedious oil body purification. Oleosin extract was indeed used to demonstrate the presence of the rare oleosin S5 in mature seeds. Moreover, this method will be useful to investigate the potential use of oleosins as emulsifier and to question their possible allergenicity.


Asunto(s)
Proteínas de Arabidopsis/análisis , Proteínas de Arabidopsis/química , Arabidopsis/química , Cloroformo/química , Immunoblotting , Metanol/química , Aceites de Plantas/metabolismo , Semillas/química , Solubilidad
16.
Traffic ; 8(11): 1601-16, 2007 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17714436

RESUMEN

We have studied the intracellular trafficking of Sit1 [ferrioxamine B (FOB) transporter] and Enb1 (enterobactin transporter) in Saccharomyces cerevisiae using green fluorescent protein (GFP) fusion proteins. Enb1 was constitutively targeted to the plasma membrane. Sit1 was essentially targeted to the vacuolar degradation pathway when synthesized in the absence of substrate. Massive plasma membrane sorting of Sit1 was induced by various siderophore substrates of Sit1, and by coprogen, which is not a substrate of Sit1. Thus, different siderophore transporters use different regulated trafficking processes. We also studied the fate of Sit1-mediated internalized siderophores. Ferrioxamine B was recovered in isolated vacuolar fractions, where it could be detected spectrophotometrically. Ferrioxamine B coupled to an inhibitor of mitochondrial protoporphyrinogen oxidase (acifluorfen) could not reach its target unless the cells were disrupted, confirming the tight compartmentalization of siderophores within cells. Ferrioxamine B coupled to a fluorescent moiety, FOB-nitrobenz-2-oxa-1,3-diazole, used as a Sit1-dependent iron source, accumulated in the vacuolar lumen even in mutants displaying a steady-state accumulation of Sit1 at the plasma membrane or in endosomal compartments. Thus, the fates of siderophore transporters and siderophores diverge early in the trafficking process.


Asunto(s)
Deferoxamina/química , Compuestos Férricos/química , Sideróforos/metabolismo , Transporte Biológico , Candida albicans/metabolismo , Membrana Celular/metabolismo , Relación Dosis-Respuesta a Droga , Genotipo , Proteínas Fluorescentes Verdes/metabolismo , Concentración 50 Inhibidora , Hierro/química , Cinética , Mitocondrias/metabolismo , Modelos Químicos , Transporte de Proteínas , Protoporfirinógeno-Oxidasa/química , Saccharomyces cerevisiae/metabolismo , Sideróforos/química , Especificidad por Sustrato
17.
Biotechnol J ; 1(3): 308-20, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16897711

RESUMEN

Plasma membrane proteins involved in transport processes play a crucial role in cell physiology. On account of these properties, these molecules are ideal targets for development of new therapeutic and agronomic agents. However, these proteins are of low abundance, which limits their study. Although yeast seems ideal for expressing heterologous transporters, plasma membrane proteins are often retained in intracellular compartments. We tried to find yeast mutants potentially able to improve functional expression of a whole set of heterologous transporters. We focused on Arabidopsis thaliana ureide transporter 1 (AtUPS1), previously cloned by functional complementation in yeast. Tagged versions of AtUPS1 remain mostly trapped in the endoplasmic reticulum and were able to reach slowly the plasma membrane. In contrast, untagged AtUPS1 is rapidly delivered to plasma membrane, where it remains in stable form. Tagged and untagged versions of AtUPS1 were expressed in cells deficient in the ubiquitin ligase Rsp5p, involved in various stages of the intracellular trafficking of membrane-bound proteins. rsp5 mutants displayed improved steady state amounts of untagged and tagged versions of AtUPS1. rsp5 cells are thus powerful tools to solve the many problems inherent to heterologous expression of membrane proteins in yeast, including ER retention.


Asunto(s)
Proteínas de Arabidopsis/biosíntesis , Membrana Celular/metabolismo , Clonación Molecular/métodos , Mejoramiento Genético/métodos , Proteínas de Transporte de Membrana/biosíntesis , Ingeniería de Proteínas/métodos , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Complejos de Ubiquitina-Proteína Ligasa/metabolismo , Proteínas de Arabidopsis/genética , Sistemas de Liberación de Medicamentos/métodos , Complejos de Clasificación Endosomal Requeridos para el Transporte , Regulación Fúngica de la Expresión Génica/fisiología , Proteínas de Transporte de Membrana/genética , Mutagénesis Sitio-Dirigida , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Complejos de Ubiquitina-Proteína Ligasa/genética
18.
Eukaryot Cell ; 5(1): 77-91, 2006 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16400170

RESUMEN

In the ciliate Paramecium tetraurelia, 3',5'-cyclic GMP (cGMP) is one of the second messengers involved in several signal transduction pathways. The enzymes for its production and degradation are well established for these cells, whereas less is known about the potential effector proteins. On the basis of a current Paramecium genome project, we have identified a multigene family with at least 35 members, all of which encode cGMP-dependent protein kinases (PKGs). They can be classified into 16 subfamilies with several members each. Two of the genes, PKG1-1 and PKG2-1, were analyzed in more detail after molecular cloning. They encode monomeric enzymes of 770 and 819 amino acids, respectively, whose overall domain organization resembles that in higher eukaryotes. The enzymes contain a regulatory domain of two tandem cyclic nucleotide-binding sites flanked by an amino-terminal region for intracellular localization and a catalytic domain with highly conserved regions for ATP binding and catalysis. However, some Paramecium PKGs show a different structure. In Western blots, PKGs are detected both as cytosolic and as structure-bound forms. Immunofluorescence labeling shows enrichment in the cell cortex, notably around the dense-core secretory vesicles (trichocysts), as well as in cilia. Immunogold electron microscopy analysis reveals consistent labeling of ciliary membranes, of the membrane complex composed of cell membrane and cortical Ca2+ stores, and of regions adjacent to ciliary basal bodies, trichocysts, and trafficking vesicles. Since PKGs (re)phosphorylate the exocytosis-sensitive phosphoprotein pp63/pf upon stimulation, the role of PKGs during stimulated exocytosis is discussed, in addition to a role in ciliary beat regulation.


Asunto(s)
Proteínas Quinasas Dependientes de GMP Cíclico/genética , Familia de Multigenes/genética , Paramecium/enzimología , Paramecium/genética , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Animales , Clonación Molecular , Secuencia de Consenso , Proteínas Quinasas Dependientes de GMP Cíclico/química , Exones/genética , Intrones/genética , Datos de Secuencia Molecular , Paramecium/citología , Paramecium/ultraestructura , Fosforilación , Filogenia , Estructura Terciaria de Proteína , Transporte de Proteínas , Proteínas Protozoarias/genética , Proteínas Recombinantes , Especificidad por Sustrato
19.
J Cell Sci ; 118(Pt 13): 2813-25, 2005 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-15976442

RESUMEN

The vacuolar proton-ATPase (V-ATPase) is a multisubunit enzyme complex that is able to transfer protons over membranes against an electrochemical potential under ATP hydrolysis. The enzyme consists of two subcomplexes: V0, which is membrane embedded; and V1, which is cytosolic. V0 was also reported to be involved in fusion of vacuoles in yeast. We identified six genes encoding c-subunits (proteolipids) of V0 and two genes encoding F-subunits of V1 and studied the role of the V-ATPase in trafficking in Paramecium. Green fluorescent protein (GFP) fusion proteins allowed a clear subcellular localization of c- and F-subunits in the contractile vacuole complex of the osmoregulatory system and in food vacuoles. Several other organelles were also detected, in particular dense core secretory granules (trichocysts). The functional significance of the V-ATPase in Paramecium was investigated by RNA interference (RNAi), using a recently developed feeding method. A novel strategy was used to block the expression of all six c- or both F-subunits simultaneously. The V-ATPase was found to be crucial for osmoregulation, the phagocytotic pathway and the biogenesis of dense core secretory granules. No evidence was found supporting participation of V0 in membrane fusion.


Asunto(s)
Orgánulos/fisiología , Paramecium/enzimología , ATPasas de Translocación de Protón Vacuolares/fisiología , Vacuolas/fisiología , Secuencia de Aminoácidos , Animales , Clonación Molecular , Silenciador del Gen/fisiología , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Membranas Intracelulares/fisiología , Membranas Intracelulares/ultraestructura , Ratones , Datos de Secuencia Molecular , Peso Molecular , Orgánulos/ultraestructura , Paramecium/citología , Paramecium/fisiología , Interferencia de ARN/fisiología , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Saccharomyces cerevisiae/enzimología , Saccharomyces cerevisiae/fisiología , Alineación de Secuencia , ATPasas de Translocación de Protón Vacuolares/química , ATPasas de Translocación de Protón Vacuolares/genética , Vacuolas/ultraestructura
20.
Traffic ; 5(7): 493-502, 2004 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-15180826

RESUMEN

Exocytotic mutants can be obtained in Paramecium that affect the organization of the fusion machinery, visible by electron microscopy. The site of action of the genes in the plasma membrane, cytosol or secretory compartment can easily be determined in such mutants. Functional complementation cloning of exocytotic mutants specifically affected in the secretory compartment, nd2-1 and nd169-1, reported here, and the previously studied nd7-1, led to the discovery of a set of novel proteins that display PSI and EGF domains, normally found in extracellular matrix proteins and involved in transmembrane signaling. The structure of one of these proteins, Nd2p, and of the product of a paralog found in the genome Nd22p, corresponds to that of type I membrane receptors, generally involved in protein and vesicle sorting. Our characterization suggests that the proteins we have identified are required to indicate the presence of a mature secretory vesicle to the plasma membrane, to prepare the machinery for fusion. We propose to name this novel subclass of receptors VEMIF, for Vesicular Extracellular-Matrix-like proteins Involved in preparing membrane Fusion.


Asunto(s)
Membrana Celular/metabolismo , Matriz Extracelular/metabolismo , Receptores de Superficie Celular/genética , Secuencia de Aminoácidos , Animales , Northern Blotting , Clonación Molecular , Citosol/metabolismo , Factor de Crecimiento Epidérmico/metabolismo , Exocitosis , Matriz Extracelular/química , Técnica de Fractura por Congelación , Silenciador del Gen , Prueba de Complementación Genética , Proteínas Fluorescentes Verdes/metabolismo , Proteínas de la Membrana/fisiología , Datos de Secuencia Molecular , Mutación , Oligonucleótidos/química , Paramecium/metabolismo , Estructura Terciaria de Proteína , Proteínas Protozoarias/fisiología , ARN/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Transducción de Señal
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