Considerations for colorblind individuals on selecting colorimetric or fluorescent dye assay outcomes.

A disadvantage of colorimetric detection in nucleic acid amplification assays is the possibility that a colorblind individual may interpret colors differently than observers with full-color vision. Using an isothermal amplification assay, the ability of colorblind individuals to distinguish between positive and negative results for four dyes was tested. Five individuals with self-reported colorblindness and four with full-color vision reported their observations of the color of the solution. Although colorblind individuals may accurately interpret assay results, they were often not accurate in reporting the color. Hydroxynaphthol blue was the most problematic dye, and both phenol red and SYBR™ green were less troublesome. Consideration for colorblind individuals is warranted when developing an assay and training staff in its performance.

LOOP-MEDIATED ISOTHERMAL AMPLIFICATION (LAMP) ASSAY FOR DETECTION OF ASIAN FISH TAPEWORM, SCHYZOCOTYLE ACHEILOGNATHI (YAMAGUTI, 1934) [SYN. BOTHRIOCEPHALUS ACHEILOGNATHI].

The Asian fish tapeworm (Schyzocotyle acheilognathi syn. Bothriocephalus acheilognathi) (AFT) is an invasive parasite that can infect many species of fish, although most hosts are primarily members of Cyprinidae. Pathogenicity has most often been reported in aquaculture settings in fry and fingerling stages of carp (Cyprinus spp.). More recently, it has been shown to cause growth retardation in the endangered bonytail chub (Gila elegans) and found to be widespread in populations of endangered humpback chub (Gila cypha) in the Colorado River, Grand Canyon, Arizona. AFT spreads most often through the transport of infected fish, particularly baitfish. Despite its harmful potential, there is no efficient or accurate ante mortem test to detect AFT in water or fish samples before transport. Herein, we report on the development of a sensitive and specific loop-mediated isothermal amplification (LAMP) assay to detect the parasite in under 30 min from laboratory prepared samples. Six LAMP primers were designed to amplify a variable region of the 18S ribosomal RNA gene in AFT with the detection and quantification of DNA on a real-time fluorometer. The limit of detection was 1 × 101 copies/µl of DNA extracted from as few as 2 AFT eggs. Future application of our assay would be a low-cost test to rapidly and accurately detect AFT DNA from environmental samples on-site so that preventive actions can be taken to halt the spread of the AFT through the movement of infected fish.

Genetic Sequencing of Attwater's Prairie Chicken Avian Poxvirus and Evaluation of Its Potential Role in Reticuloendotheliosis Virus Outbreaks.

Efforts to breed Attwater's prairie chickens (APC; Tympanuchus cupido attwateri) in captivity to supplement wild populations of this endangered bird have been negatively affected by infections with Avipoxvirus and reticuloendotheliosis virus (REV). Because REV can be integrated into the genome of fowlpox virus (FPV) and may be transmitted in that manner, identifying the source of avipox disease in APC is important to mitigate the impact of this virus. Tissue samples from APC were collected from breeding programs in Texas from 2016 to 2020. These samples consisted of 11 skin lesions and three internal organs from a total of 14 different birds that died of unknown causes or were euthanized. Avipoxvirus was detected by PCR and isolation in embryonating chicken eggs in all skin lesion samples but was not detected in internal organs. Using sequence analysis of FPV polymerase and 4b genes, we determined that 10 out of 11 Avipoxvirus detections resided within the fowlpox clade and a single sample resided within the canarypox clade. REV sequences were detected in all FPV positive samples and in all internal organ tissues but were not detected in the sample matching the canarypox clade. Analysis of REV sequences and PCR detection showed the REV infecting APC was consistent with REV-A and had little variability on analysis of the U3 region of the long terminal repeat. The results of this study indicate control of REV in APC breeding colonies may benefit by a vaccination program targeting FPV and REV. However, a commercially available vaccine for REV is not available at this time.

Secuenciación genética de un virus de la viruela aviar de un gallo grande de las praderas Attwater y evaluación de su papel potencial en los brotes del virus de la reticuloendoteliosis. Los esfuerzos para criar gallos de las praderas grandes de Attwater (APC; Tympanuchus cupido attwateri) en cautiverio para complementar las poblaciones silvestres de esta ave en peligro de extinción se han visto afectados negativamente por infecciones con Avipoxvirus y con el virus de la reticuloendoteliosis (REV). Debido a que el virus de la reticuloendoteliosis puede integrarse en el genoma del virus de la viruela del pollo (FPV) y puede transmitirse de esa manera, identificar la fuente del virus pox en gallos de las praderas grandes es importante para mitigar el impacto de este virus. Se recolectaron muestras de tejido de gallos de las praderas grandes de programas de reproducción en Texas entre los años 2016 a 2020. Estas muestras consistieron en 11 lesiones cutáneas y tres órganos internos de un total de 14 aves diferentes que murieron por causas desconocidas o fueron sacrificadas. El Avipoxvirus se detectó mediante PCR y por aislamiento en huevos embrionados de pollo en todas las muestras de lesiones cutáneas, pero no se detectó en los órganos internos. Utilizando el análisis de secuencia de la polimerasa del virus de la viruela del pollo y de los genes 4b, se determinó que diez de las once detecciones de Avipoxvirus residían dentro del clado de la viruela aviar del pollo y una sola muestra residía dentro del clado de la viruela del canario. Se detectaron secuencias del virus de la reticuloendoteliosis en todas las muestras positivas para virus de la viruela de pollo y en todos los tejidos de órganos internos, pero no se detectaron en la muestra que coincidía con el clado de la viruela del canario. El análisis de las secuencias del virus de la reticuloendoteliosis y la detección por PCR mostró que los virus de reticuloendoteliosis que infectan a gallos de las praderas grandes eran compatible con virus de la reticuloendoteliosis A y tenía poca variabilidad en el análisis de la región U3 de la región repetida terminal larga. Los resultados de este estudio indican que el control del virus de la reticuloendoteliosis en colonias reproductoras de gallos de las praderas grandes puede beneficiarse de un programa de vacunación dirigido los virus de la viruela del pollo y de la reticuloendoteliosis. Sin embargo, una vacuna disponible comercialmente contra el virus de la reticuloendoteliosis no está disponible en este momento.