Drought Tolerance Assessment of Okra (Abelmoschus esculentus [L.] Moench) Accessions Based on Leaf Gas Exchange and Chlorophyll Fluorescence.

Physiological and complementary phenotypic traits are essential in the selection of drought-adapted crop genotypes. Understanding the physiological response of diverse okra genotypes under drought stress conditions is critical to the selection of drought-tolerant accessions for production or breeding. The objective of this study was to assess the levels of drought tolerance in preliminarily selected okra accessions based on leaf gas exchange and chlorophyll fluorescence to determine best-performing genotypes for drought-tolerance breeding. Twenty-six genetically diverse okra accessions were screened under non-stressed (NS) and drought-stressed (DS) conditions under a controlled glasshouse environment using a 13 × 2 alpha lattice design in three replicates, in two growing seasons. Data were subjected to statistical analyses using various procedures. A significant genotype × water condition interaction effect was recorded for transpiration rate (T), net CO2 assimilation (A), intrinsic water use efficiency (WUEi), instantaneous water use efficiency (WUEins), minimum fluorescence (Fo'), maximum fluorescence (Fm'), maximum quantum efficiency of photosystem II photochemistry (Fv'/Fm'), the effective quantum efficiency of PSII photochemistry (ɸPSII), photochemical quenching (qP), nonphotochemical quenching (qN) and relative measure of electron transport to oxygen molecules (ETR/A). The results suggested variable drought tolerance of the studied okra accessions for selection. Seven principal components (PCs) contributing to 82% of the total variation for assessed physiological traits were identified under DS conditions. Leaf gas exchange parameters, T, A and WUEi, and chlorophyll fluorescence parameters such as the ɸPSII, Fv'/Fm', qP, qN, ETR and ETR/A had high loading scores and correlated with WUEi, the ɸPSII, qP and ETR under DS conditions. The study found that optimal gas exchange and photoprotection enhance drought adaptation in the assessed okra genotypes and tested water regimes. Using the physiological variables, the study identified drought-tolerant accessions, namely LS05, LS06, LS07 and LS08 based on high A, T, Fm', Fv'/Fm' and ETR, and LS10, LS11, LS18 and LS23 based on high AES, Ci, Ci/Ca, WUEi, WUEins, ɸPSII and AES. The selected genotypes are high-yielding (≥5 g/plant) under drought stress conditions and will complement phenotypic data and guide breeding for water-limited agro-ecologies.

Analysis of Genetic Diversity and Population Structure of Cowpea (Vigna unguiculata (L.) Walp) Genotypes Using Single Nucleotide Polymorphism Markers.

Cowpea (Vigna unguiculata (L.) Walp) is an important legume crop with immense potential for nutritional and food security, income generation, and livestock feed in Sub-Saharan Africa. The crop is highly tolerant to heat and drought stresses which makes it an extremely important crop for improving resilience in crop production in the face of climate change. This study was carried out to assess the genetic diversity and population structure of 90 cowpea accessions using single nucleotide polymorphism (SNP) markers. Out of 11,940 SNPs used, 5864 SNPs were polymorphic and maintained for genome diversity analysis. Polymorphic information content (PIC) values ranged from 0.22 to 0.32 with a mean value of 0.27. The model-based Bayesian STRUCTURE analysis classified 90 cowpea accessions into four subpopulations at K = 4, while the distance-based cluster analysis grouped the accessions into three distinct clusters. The analysis of molecular variance (AMOVA) revealed that 59% and 69% of the total molecular variation was attributed to among individual variation for model-based and distance-based populations, respectively, and 18% was attributed to within individual variations. Furthermore, the low heterozygosity among cowpea accessions and the high inbreeding coefficient observed in this study suggests that the accessions reached an acceptable level of homozygosity. This study would serve as a reference for future selection and breeding programs of cowpea with desirable traits and systematic conservation of these plant genetic resources.

Screening Bambara Groundnut (Vigna subterranea L. Verdc) Genotypes for Drought Tolerance at the Germination Stage under Simulated Drought Conditions.

Bambara groundnut (Vigna subterranean L. Verdc) is grown by smallholders and subsistence farmers in the marginal parts of sub-Saharan Africa. This legume is native to Africa and is cultivated throughout semi-arid sub-Saharan Africa. It is hardy and has been recognized as a nutritious food source in times of scarcity. Drought can negatively affect the germination or establishment of seedlings in the early stages of crop growth. Drought can limit the growing season of certain crops and create conditions that encourage the invasion of insects and diseases. Drought can also lead to a lack of crop yield, leading to rising food prices, shortages, and possibly malnutrition in vulnerable populations. A drought-tolerant genotype can be identified at the germination stage of Bambara groundnut by screening for drought-tolerance traits, and this knowledge can be applied to Bambara crop improvement programs to identify drought-tolerant traits during early growth phases. As an osmolyte, polyethylene glycol (PEG 6000) reduced water potential and simulated drought stress in Bambara groundnut seeds of different genotypes. Osmolytes are low-molecular-weight organic compounds that influence biological fluid properties. In this study, 24 Bambara groundnut genotypes were used. Data were collected on seed germination percentage (G%), germination velocity index (GVI), mean germination time (MGT), root dry mass (RDM), root fresh mass (RFM), and seven drought tolerance indices: mean productivity (MP), tolerance index (TOL), geometric mean productivity (GMP), stress susceptibility index (SSI), yield index (YI), yield stability index (YSI), stress tolerance index (STI) as well as seed coat color measurements. The data were applied to the mean observation of genotypes under simulated drought conditions (Ys) and the mean observation of genotypes under controlled conditions (Yp). Germination%, germination velocity index (GVI), mass germination time (MGT), and root fresh mass (RFM) differed significantly (p < 0.001) between the two stress conditions. Bambara genotypes Acc 82 and Acc 96 were found to be the most drought-tolerant.

Breeding of Vegetable Cowpea for Nutrition and Climate Resilience in Sub-Saharan Africa: Progress, Opportunities, and Challenges.

Currently, the world population is increasing, and humanity is facing food and nutritional scarcity. Climate change and variability are a major threat to global food and nutritional security, reducing crop productivity in the tropical and subtropical regions of the globe. Cowpea has the potential to make a significant contribution to global food and nutritional security. In addition, it can be part of a sustainable food system, being a genetic resource for future crop improvement, contributing to resilience and improving agricultural sustainability under climate change conditions. In malnutrition prone regions of sub-Saharan Africa (SSA) countries, cowpea has become a strategic dryland legume crop for addressing food insecurity and malnutrition. Therefore, this review aims to assess the contribution of cowpea to SSA countries as a climate-resilient crop and the existing production challenges and perspectives. Cowpea leaves and immature pods are rich in diverse nutrients, with high levels of protein, vitamins, macro and micronutrients, minerals, fiber, and carbohydrates compared to its grain. In addition, cowpea is truly a multifunctional crop for maintaining good health and for reducing non-communicable human diseases. However, as a leafy vegetable, cowpea has not been researched and promoted sufficiently because it has not been promoted as a food security crop due to its low yield potential, susceptibility to biotic and abiotic stresses, quality assurance issues, policy regulation, and cultural beliefs (it is considered a livestock feed). The development of superior cowpea as a leafy vegetable can be approached in different ways, such as conventional breeding and gene stacking, speed breeding, mutation breeding, space breeding, demand-led breeding, a pan-omics approach, and local government policies. The successful breeding of cowpea genotypes that are high-yielding with a good nutritional value as well as having resistance to biotics and tolerant to abiotic stress could also be used to address food security and malnutrition-related challenges in sub-Saharan Africa.

Expression of Nutritional Traits in Vegetable Cowpea Grown under Various South African Agro-Ecological Conditions.

Cowpea (Vigna unguiculata L.), a traditional legume food crop indigenous to Africa, has potential as both a vegetable and grain crop in contributing to dietary diversity to support health and address malnutrition, especially for those relying heavily on wheat, maize, and rice. The expression of nutritional traits (protein content and concentrations of iron (Fe), zinc (Zn), and manganese (Mn)) in cowpea leaves was evaluated over diverse agro-ecologies of South Africa and typical agronomic practices of smallholder farmers. The genotypes evaluated displayed genetic variation for all four traits. The mean values of Fe, Zn, Mn and protein content varied from 33.11 to 69.03 mg.100.g-1; 4.00 to 4.70 mg.100.g-1; and 14.40 to 19.63 mg.100.g-1 and 27.98 to 31.98%, respectively. The correlation analysis revealed significant degree of positive association between protein and Zn (r = 0.20), while negative associations were observed between Mn and protein (-0.46) and between Mn and Fe (r = -0.27). Furthermore, the expression of these important nutrient traits was influenced by the climatic conditions represented by six environments (location by year combinations) as is typical of 'quality' traits. Additionally, genotype-by-environment interaction effects were detected, suggesting that local soil properties and soil health may play a role in nutritional content in plants, perhaps particularly for legume crops that rely on symbiotic relationships with soil bacterial populations to fix nitrogen, which is crucial to protein formation. Further studies are needed to understand how to coordinate and align agronomic and soil management practices in vegetable cowpea production, especially those workable for the smallholder farmer, to realize the full genetic potential and nutritional value of improved vegetable cowpea varieties.

Nutritional and phytochemical compositions and their interrelationship in succulent pods of pigeonpea (Cajanus cajan [L.] Millsp.).

Malnutrition remains one of the major human health issues affecting millions of people in sub-Saharan Africa (SSA). Hence, the objective of this study was to quantify the nutritional and phytochemical compositions of immature pods of pigeonpea genotypes to select promising lines with unique nutritional quality for production and cultivar development. Seven preliminarily tested and identified pigeonpea genotypes were grown under field conditions using a randomized complete block design with three replicates to quantify the nutritional and phytochemical contents in the immature pods. Significant (P ≤ 0.01) genotype effect was detected for the assessed nutritional and phytochemical compositions. Relatively higher contents of iron (15.53 mg/100g), zinc (1.59 mg/100g), magnesium (114.60 mg/100g) and total flavonoid (8.47 mg CE/g) were present in genotype Ilonga_14m1 ICEAP-0054. Higher compositions of beta-carotene (2.84 mg/100g), total phenolics (20.42 mg GAE/g), and vitamin-C (95.84 mg/100g) were detected in genotypes, Mali ICEAP-00046, PigeonP-3018 and Kiboko ICEAP-00932, respectively. Cluster analysis allocated the tested genotypes into three main groups. Significant (P ≤ 0.05) positive correlations were recorded among the assessed nutritional and phytochemical compositions that will allow direct and indirect selection of the evaluated genotypes for nutritional and phytochemical quality improvement. The principal component analysis resolved four components that cumulatively explained 76.85% of the total genetic variation in nutritional and phytochemical compositions among the tested genotypes of pigeonpea. Genotype PigeonP-3021 exhibited high levels of beta-carotene and vitamin C, while Kiboko ICEAP-00932 and PigeonP-3018 had high contents of aluminium, iron, phosphorus and total phenolics. Genotype Ilonga_14m1 ICEAP-0054 had high compositions of zinc, potassium, magnesium, copper and calcium. Unique pigeonpea genotypes (i.e., PigeonP-3021, Kiboko ICEAP-00932, and PigeonP-3018) were identified for quality breeding or direct production with promising nutrient profiles for food and nutrition security.

Phenotypic description of elite cowpea (Vigna ungiculata L. Walp) genotypes grown in drought-prone environments using agronomic traits.

Identification and selection of cowpea genotypes possessing suitable agronomic attributes is key for cultivar development to increase production. The objective of this study was to evaluate cowpea genotypes using agronomic traits to aid selection and identification of best genotypes for adoption and breeding to develop high-yielding cultivars. Agronomic traits of 20 cowpea genotypes were evaluated under Tompi Seleka and Polokwane environments using a completely randomised block design. Significant (P ≤ 0.01) genotype effect was identified for agronomic traits, whereas environment effect was significant (P ≤ 0.05) for number of productive branches (NB), leaf width (LW), leaf length (LL), hundred-seed weight (HSW) and grain yield (GY). Significant genotype-by-environment interaction effect was observed for pod length (PL), pod width (PW) and number of seeds per pod (SPP). Correlation analysis revealed positive and significant associations between NB with LW (r = 0.58; P ≤ 0.01), LL (r = 0.67; P ≤ 0.01), number of pods per plant (PPP) (r = 0.56; P ≤ 0.01) and HSW (r = 0.47; P ≤ 0.05). LW was positively and significantly correlated with LL (r = 0.71; P ≤ 0.00), PPP (r = 0.56; P ≤ 0.01) and SPP (r = 0.58; P ≤ 0.01). Positive and significant correlation was observed between LL with chlorophyll content index (CCI) (r = 0.54; P ≤ 0.05), PPP (r = 0.68; P ≤ 0.01) and pod length (PL) (r = 0.52; P ≤ 0.05). PW was positively and significantly associated with PL (r = 0.68; P ≤ 0.01) and SPP (r = 0.61; P ≤ 0.01), whereas PL was positively associated with SPP (r = 0.82; P ≤ 0.01). Cowpea genotypes CH14, Embo buff, IT89D-349, IT96D-602, Veg cowpea 1, Veg cowpea 2, Veg cowpea 3 and Veg cowpea dakama red recorded high NB, plant height (PH), LL, LW, chlorophyll content index (CCI), number of pods per plant (PPP), HSW and GY. Also, genotypes 2460, IT96D-748, Oukawa, Ukaluleni, Veg cowpea dakama cream and Vigna Onb were associated with PL, SPP and PW. The identified genotypes possessing suitable agronomic traits are recommended for farmer-adoption and inclusion in breeding programs for cultivar development.

Biopriming with Seaweed Extract and Microbial-Based Commercial Biostimulants Influences Seed Germination of Five Abelmoschus esculentus Genotypes.

Seed germination is a crucial step in plant propagation, as it controls seedling production, stand establishment and ultimately crop yield. Approaches that can promote seed germination of valuable crops remain of great interest globally. The current study evaluated the effect of biostimulant (Kelpak® and plant-growth-promoting rhizobacteria-PGPR) biopriming on the seed germination of five (VI037996, VI046567, VI055421, VI050956, and VI033796) Abelmoschus esculentus genotypes. The germination responses of the bio-primed seeds were measured using six parameters, including final germination percentage (FGP), mean germination time (MGT), germination index (GI), coefficient of velocity of germination (CVG), germination rate index (GRI), and time spread of germination (TSG). Biostimulant application significantly affected MGT (1.1-2.2 days), CVG (1.4-5.9), and TSG (1.2-3.0 days). Genotype also significantly influenced the TSG (1-3 days). Significant interaction effect of biostimulant treatment and genotype was evident on the FGP, GI, and GRI of the germinated seeds. The most noteworthy effect was demonstrated by Kelpak® (1:100) applied to genotype VI037996, with significantly improved FGP (82%), GI (238), and GRI (77%/day) when compared to the control. Overall, the current findings suggest the potential stimulatory effect of biostimulants (especially Kelpak®) on the germination of Abelmoschus esculentus seeds. However, this influence was strongly dependent on the type of genotype.

Variation in mineral element composition of landrace taro (Colocasia esculenta) corms grown under dryland farming system in South Africa.

Taro [Colocasia esculenta (L.) Schott] has the potential to address food and nutrition insecurity in sub-Saharan Africa. However, the nutrient content of taro is yet to be fully elucidated. The objective of this study was to evaluate mineral element content as a proxy for nutritional value of different taro genotypes. The study evaluated 14 taro accessions at Roodeplaat and Umbumbulu in South Africa based on their calcium (Ca), iron (Fe), potassium (K), magnesium (Mg), manganese (Mn), sodium (Na), phosphorous (P) and zinc (Zn) content. The accessions were planted in a randomized complete block design, replicated three times under field conditions. The mineral element content varied significantly (p < 0.05) among the genotypes. Genotypes Amad7-2, Umbu8 and Amad101 exhibited high Ca (≥432 mg kg-1), Fe (≥32 mg kg-1) and Mg (≥229 mg kg-1) across the locations. The first principal component (PC) accounted for 33.7% of the variation and was strongly associated with Zn (r = 0.94, p < 0.001) and P (r = 0.89, p < 0.001). The second PC explained 29.7% of the variation and was associated with Na (r = 0.83, p < 0.001), Mg (r = 0.76, p < 0.001) and K (r = 0.55, p < 0.05). Fe and Mn contributed below the 12.5% threshold to the PCs and were considered as less discriminatory among the accessions. The negative correlations among some of the mineral elements would be a challenge for selection and breeding of nutritious taro accessions. This information is essential to select superior local accessions based on their mineral element content for developing breeding populations and lines for improving nutrition quality among poor households in sub-Saharan Africa.

Xylan from bambara and cowpea biomass and their structural elucidation.

This work is the first report on the isolation and structural elucidation of xylan from bambara and cowpea biomass. The xylans, isolated using acidic delignification followed by NaOH extraction method gave 12.3% and 13.6% yield, respectively. 1H NMR analyses revealed that both the xylans were glucuronoxylan. The presence of xylose and glucuronic acid was confirmed by monosaccharide analysis and uronic acid assay. Further, xylooligosaccharide production from bambara and cowpea xylans was carried out using xylanase from three different glycoside hydrolase families, and the products were analyzed by TLC and MALDI-ToF MS. The hydrolysis products of both xylans resembled hardwood glucuronoxylan fragments, generated under similar conditions. The most common oligosaccharides observed in the hydrolysates were Xyl2, Xyl3, MeGlcA3Xyl3, MeGlcAXyl4 and MeGlcAXyl5. A series of computational approaches were also used to study the interactions of the three different xylanases with xylan. Thus, untapped biomass such as bambara and cowpea could serve as a potential source for xylan which could further be converted to xylooligosaccharides and many other value-added chemicals.

Draft Genome Sequence of Alternaria alternata Isolated from Onion Leaves in South Africa.

Alternaria alternata (Fr.) Keissler strain PPRI 21032 was isolated from onion leaves collected in Roodeplaat, Pretoria, South Africa. The whole genome of this strain was sequenced and produced a total of 33.12 Mb with a GC content of 50.9%. The whole genome comprises 11,701 predicted coding sequences.