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1.
J Hazard Mater ; 465: 133403, 2024 Mar 05.
Artículo en Inglés | MEDLINE | ID: mdl-38215523

RESUMEN

Aluminium (Al) is one of the most popular materials for industrial and domestic use. Nevertheless, research has proven that this metal can be toxic to most organisms. This light metal has no known biological function and to date very few aluminium-specific biological pathways have been identified. In addition, information about the impact of this metal on microbial life is scarce. Here, we aimed to study the effect of aluminium on the metal-resistant soil bacterium Cupriavidus metallidurans CH34 in different growth modes, i.e. planktonic cells, adhered cells and mature biofilms. Our results indicated that despite a significant tolerance to aluminium (minimal inhibitory concentration of 6.25 mM Al2(SO4)3.18H2O), the exposure of C. metallidurans to a sub-inhibitory dose (0.78 mM) caused early oxidative stress and an increase in hydrolytic activity. Changes in the outer membrane surface of planktonic cells were observed, in addition to a rapid disruption of mature biofilms. On protein level, aluminium exposure increased the expression of proteins involved in metabolic activity such as pyruvate kinase, formate dehydrogenase and poly(3-hydroxybutyrate) polymerase, whereas proteins involved in chemotaxis, and the production and transport of iron scavenging siderophores were significantly downregulated.


Asunto(s)
Aluminio , Cupriavidus , Proteómica , Metales/metabolismo , Cupriavidus/metabolismo , Proteínas Bacterianas/metabolismo
2.
Biofouling ; 38(6): 643-655, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35924687

RESUMEN

Bacteria biofilm formation and its complications are of special concern in isolated structures, such as offshore stations, manned submarines and space habitats, as maintenance and technical support are poorly accessible due to costs and/or logistical challenges. In addition, considering that future exploration missions are planned to adventure farther and longer in space, unlocking biofilm formation mechanisms and developing new antifouling solutions are key goals in order to ensure spacecraft's efficiency, crew's safety and mission success. In this work, we explored the interactions between Cupriavidus metallidurans, a prevalently identified contaminant onboard the International Space Station, and aerospace grade materials such as the titanium alloy TiAl6V4, the stainless steel AISI 316 (SS316) and Polytetrafluoroethylene (PTFE) or Teflon. Borosilicate glass was used as a control and all surfaces were investigated at two different pH values (5.0 and 7.0). Biofilms were almost absent on stainless steel and the titanium alloy contrary to Teflon and glass that were covered by an extensive biofilm formed via monolayers of scattered matrix-free cells and complex multilayered clusters or communities. Filamentous extracellular DNA structures were observed specifically in the complex multilayered clusters adherent to Teflon, indicating that the employed attachment machinery might depend on the physicochemical characteristics of the surface.


Asunto(s)
Cupriavidus , Vuelo Espacial , Aleaciones , Biopelículas , Cupriavidus/química , Politetrafluoroetileno , Acero Inoxidable , Titanio
3.
Sci Rep ; 10(1): 22150, 2020 12 17.
Artículo en Inglés | MEDLINE | ID: mdl-33335179

RESUMEN

Aquacultivated sea cucumbers often suffer from SKin Ulceration Diseases (SKUDs). SKUDs have been observed in six holothuroid species from nine countries. All SKUDs present a similar symptom-the skin ulceration-and can be induced by bacteria, viruses, or abiotic factors. We here provide an update on SKUDs in holothuroids and analyse the case of the SKUD observed in Holothuria scabra in Madagascar. Field observations revealed a seasonality of the disease (i.e. wintertime maximum peak). Morphological analyses of integument ulcers showed that sea cucumbers react by forming a collagen fibre plug. Metagenomic analyses revealed a higher proportion of Vibrionaceae (Gammaproteobacteria) in ulcers in comparison to the healthy integument of the same individuals. Experimental infection assays were performed with ulcer crude extracts and bacteria isolated from these extracts (e.g. Vibrio parahaemolyticus) but did not significantly induce skin ulceration. Our results suggest that the disease is not induced by a pathogen or, at the very least, that the pathogen is not found within the ulcers as the disease is not transmissible by contact. An initial cause of the SKUD in Madagascar might be the repeated and prolonged exposures to cold temperatures. Opportunistic bacteria could settle in the dermis of ulcerated individuals and promote the ulcer extension. We propose a general nomenclature for SKUDs based on the acronym of the disease, the affected sea cucumber species (e.g. Hs for Holothuria scabra), the concerned region using an ISO code 3166-2 (e.g. MG for Madagascar), the description date (e.g. 20 for the year 2020), and, when known, the inducing agent (first letter of the general taxon, b for bacteria, v for virus in currently known cases; a a if it is an abiotic inducing parameter; nothing if the inducing cause has not been precisely identified). The disease described in this work will be designated under the name SKUD Hs-MG-20.


Asunto(s)
Enfermedades de los Animales/epidemiología , Equinodermos , Holothuria , Úlcera Cutánea/veterinaria , Enfermedades de los Animales/etiología , Animales , Susceptibilidad a Enfermedades , Equinodermos/microbiología , Holothuria/microbiología , Inmunohistoquímica , Madagascar/epidemiología , Piel/microbiología , Piel/patología , Piel/ultraestructura , Evaluación de Síntomas
4.
Opt Express ; 28(13): 19740-19749, 2020 Jun 22.
Artículo en Inglés | MEDLINE | ID: mdl-32672244

RESUMEN

Environmental monitoring and potable water control are key applications where optical fiber sensing solutions can outperform other technologies. In this work, we report a highly sensitive plasmonic fiber-optic probe that has been developed to determine the concentration of cadmium ions (Cd2+) in solution. This original sensor was fabricated by immobilizing the Acinetobacter sp. around gold-coated tilted fiber Bragg gratings (TFBGs). To this aim, the immobilization conditions of bacteria on the gold-coated optical fiber surface were first experimentally determined. Then, the coated sensors were tested in vitro. The relative intensity of the sensor response experienced a change of 1.1 dB for a Cd2+ concentration increase from 0.1 to 1000 ppb. According to our test procedure, we estimate the experimental limit of detection to be close to 1 ppb. Cadmium ions strongly bind to the sensing surface, so the sensor exhibits a much higher sensitivity to Cd2+ than to other heavy metal ions such as Pb2+, Zn2+ and CrO42- found in contaminated water, which ensures a good selectivity.


Asunto(s)
Acinetobacter/química , Cadmio/análisis , Cupriavidus/química , Tecnología de Fibra Óptica/instrumentación , Pseudomonas/química , Técnicas Biosensibles/métodos , Diseño de Equipo , Tecnología de Fibra Óptica/métodos , Iones , Resonancia por Plasmón de Superficie/métodos
5.
FEMS Microbiol Ecol ; 96(6)2020 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-32343356

RESUMEN

Anthropogenic metal contamination results in long-term environmental selective pressure with unclear impacts on bacterial communities, which comprise key players in ecosystem functioning. Since metal contamination poses serious toxicity and bioaccumulation issues, assessing their impact on environmental microbiomes is important to respond to current environmental and health issues. Despite elevated metal concentrations, the river sedimentary microbiome near the MetalEurop foundry (France) shows unexpected higher diversity compared with the upstream control site. In this work, a follow-up of the microbial community assembly during a metal contamination event was performed in microcosms with periodic renewal of the supernatant river water. Sediments of the control site were gradually exposed to a mixture of metals (Cd, Cu, Pb and Zn) in order to reach similar concentrations to MetalEurop sediments. Illumina sequencing of 16S rRNA gene amplicons was performed. Metal-resistant genes, czcA and pbrA, as well as IncP plasmid content, were assessed by quantitative PCR. The outcomes of this study support previous in situ observations showing that metals act as community assembly managers, increasing diversity. This work revealed progressive adaptation of the sediment microbiome through the selection of different metal-resistant mechanisms and cross-species interactions involving public good-providing bacteria co-occurring with the rest of the community.


Asunto(s)
Metales Pesados , Microbiota , Contaminantes Químicos del Agua , Bacterias/genética , Monitoreo del Ambiente , Francia , Sedimentos Geológicos , Metales , Metales Pesados/análisis , Metales Pesados/toxicidad , ARN Ribosómico 16S/genética , Ríos , Contaminantes Químicos del Agua/análisis
6.
J Hazard Mater ; 382: 121173, 2020 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-31563088

RESUMEN

For a century, the MetalEurop foundry released metals into the river "La Deûle". Previous work revealed higher microbial diversity in metal impacted sediments, and horizontal gene transfer mediated by conjugative plasmids was suggested to drive the community adaptation to metals. We used an integrative state-of-the-art molecular approach coupling quantitative PCR, conjugation assays, flow cytometry, fluorescence activated cell sorting and 16S rRNA gene amplicon sequencing to investigate the presence of conjugative plasmids and their propagation patterns in sediment microbiomes. We highlighted the existence of a native broad-host range IncP conjugative plasmid population in polluted sediments, confirming their ecological importance for microbial adaptation. However, despite incompatibilities and decreased transfer frequencies with our own alien IncP plasmid, we evidenced that a wide diversity of bacterial members was still prone to uptake the plasmid, indicating that sediment microbial communities are still inclined to receive conjugative plasmids from the same group. We observed that metal pollution favoured exogenous plasmid transfer to specific metal-selected bacteria, which are likely coming from upstream sources (e.g. wastewater treatment plant, farms…). Altogether, our results suggest that MetalEurop sediments are hotspots for gene transfer via plasmids, acting as an "environmental reservoir" for microbes and mobile elements released by human activities.


Asunto(s)
Sedimentos Geológicos/microbiología , Plásmidos , Ríos/microbiología , Transferencia de Gen Horizontal , Metales , Microbiota , ARN Ribosómico 16S , Reacción en Cadena en Tiempo Real de la Polimerasa , Contaminantes Químicos del Agua , Contaminación del Agua
7.
J Hazard Mater ; 344: 299-307, 2018 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-29055834

RESUMEN

Metal contamination poses serious biotoxicity and bioaccumulation issues, affecting both abiotic conditions and biological activity in ecosystem trophic levels, especially sediments. The MetalEurop foundry released metals directly into the French river "la Deûle" during a century, contaminating sediments with a 30-fold increase compared to upstream unpolluted areas (Férin, Sensée canal). Previous metaproteogenomic work revealed phylogenetically analogous, but functionally different microbial communities between the two locations. However, their potential activity status in situ remains unknown. The present study respectively compares the structures of both total and active fractions of sediment prokaryotic microbiomes by coupling DNA and RNA-based sequencing approaches at the polluted MetalEurop site and its upstream control. We applied the innovative ecological concept of Functional Response Groups (FRGs) to decipher the adaptive tolerance range of the communities through characterization of microbial lifestyles and strategists. The complementing use of DNA and RNA sequencing revealed indications that metals selected for mechanisms such as microbial facilitation via "public-good" providing bacteria, Horizontal Gene Transfer (HGT) and community coalescence, overall resulting in an unexpected higher microbial diversity at the polluted site.


Asunto(s)
Sedimentos Geológicos/microbiología , Metales , Microbiología del Agua , Contaminantes Químicos del Agua , Biodiversidad , ADN Bacteriano/genética , Sedimentos Geológicos/química , Residuos Industriales , Microbiota , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Ríos
8.
Environ Microbiol ; 19(2): 770-787, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27943589

RESUMEN

Remains of a medieval foundry were excavated by archaeologists in 2013 in Verdun (France). Ancient workshops specialized in brass and copper alloys were found with an activity between 13th to 16th c. Levels of Cu, Zn and Pb reached 20000, 7000 and 6000 mg kg-1 (dw), respectively, in several soil horizons. The objective of the present work was to examine the microbial community in this contaminated site. A total of 8-22 106 reads were obtained by shotgun metagenomics in four soil horizons. Bioinformatic analyses suggest the presence of complex bacterial communities dominated by Proteobacteria. The structure of the community was not affected by metals, contrary to the set of metal-resistance genes. Using selective media, a novel strain of Cupriavidus necator (eutrophus), strain B9, was isolated. Its genome was sequenced and a novel metal resistance gene cluster with Hg resistance genes (merRTPCA) followed by 24 copper-resistance genes (actP, cusCBAF, silP, copK1, copH4QLOFGJH3IDCBARS, copH2H1, copK2) was found. This cluster is partly homologous to the cop genes of Cupriavidus gilardii CR3 and C. metallidurans CH34. Proteomics indicated that the four copH genes were differentially expressed: CopH1 and CopH2 were mostly induced by Cd while CopH4 was highly expressed by Cu.


Asunto(s)
Cobre/metabolismo , Cupriavidus necator/metabolismo , Microbiología del Suelo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cupriavidus necator/efectos de los fármacos , Cupriavidus necator/genética , Cupriavidus necator/aislamiento & purificación , Francia , Historia del Siglo XV , Historia Medieval , Mercurio/metabolismo , Microbiología/historia , Familia de Multigenes
9.
Water Res ; 94: 208-214, 2016 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-26945964

RESUMEN

The impact of human activities on the spread and on the persistence of antibiotic resistances in the environment is still far from being understood. The natural background of resistances is influenced by human activities, and the wastewater treatment plants (WWTPs) are among the main sources of the release of antibiotic resistance into the environment. The various treatments of WWTPs provide a number of different environmental conditions potentially favoring the selection of antibiotic resistance genes (ARGs) and thereby their well-documented spread in the environment. Although the distribution of different ARGs in WWTPs has been deeply investigated, very little is known on the ecology and on the molecular mechanisms underlying the selection of specific ARGs. This study investigates the fate of diverse ARGs, heavy metal resistance genes (HMRGs) and of a mobile element (the class I integron) in three WWTPs. Abundances of the different genetic markers were correlated to each other and their relation to biotic and abiotic factors (total organic carbon, total nitrogen, prokaryotic cell abundance and its relative distribution in single cells and aggregates) influencing the microbial communities in the different treatment phases in three WWTPs, were investigated. Water samples were analyzed for the abundance of six ARGs (tetA, sulII, blaTEM, blaCTXM,ermB, and qnrS), two HMRGs (czcA and arsB), and of the class I integron (int1). The measured variables clustered in two well-defined groups, the first including tetA, ermB, qnrS and the different biotic and abiotic factors, and a second group around the genes sulII, czcA, arsB and int1. Moreover, the dynamics of sulII, HMRGs, and int1 correlated strongly. Our results suggest a potentially crucial role of HMRGs in the spread, mediated by mobile elements, of some ARGs, i.e. sulII. The possibility of a relation between heavy metal contamination and the spread of ARGs in WWTPs calls for further research to clarify the mechanisms of co-selection and their ecology, in order to implement the removal efficiency of the applied treatments.


Asunto(s)
Farmacorresistencia Microbiana/genética , Genes Bacterianos , Integrasas/genética , Integrones , Eliminación de Residuos Líquidos , Aguas Residuales/análisis , Antibacterianos , Bacterias/aislamiento & purificación , Metales Pesados , Aguas Residuales/microbiología
10.
Environ Sci Pollut Res Int ; 23(11): 10679-10692, 2016 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-26884242

RESUMEN

The bioavailability of metals was estimated in three river sediments (Sensée, Scarpe, and Deûle Rivers) impacted by different levels of Cu, Cd, Pb, and Zn (Northern France). For that, a combination of geochemistry and biological responses (bacteria and chironomids) was used. The results obtained illustrate the complexity of the notion of "bioavailability." Indeed, geochemical indexes suggested a low toxicity, even in surface sediments with high concentrations of total metals and a predicted severe effect levels for the organisms. This was also suggested by the abundance of total bacteria as determined by DAPI counts, with high bacterial cell numbers even in contaminated areas. However, a fraction of metals may be bioavailable as it was shown for chironomid larvae which were able to accumulate an important quantity of metals in surface sediments within just a few days.We concluded that (1) the best approach to estimate bioavailability in the selected sediments is a combination of geochemical and biological approaches and that (2) the sediments in the Deûle and Scarpe Rivers are highly contaminated and may impact bacterial populations but also benthic invertebrates.


Asunto(s)
Chironomidae/metabolismo , Metales Pesados/análisis , Metales Pesados/metabolismo , Contaminantes Químicos del Agua/análisis , Contaminantes Químicos del Agua/metabolismo , Animales , Bacterias/aislamiento & purificación , Disponibilidad Biológica , Monitoreo del Ambiente/métodos , Francia , Sedimentos Geológicos/análisis , Larva/metabolismo , Ríos/química , Ríos/microbiología , Microbiología del Agua
11.
Curr Opin Biotechnol ; 38: 123-30, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26874608

RESUMEN

Metal resistance systems found in complex bacterial communities by shotgun metagenomic approaches were reviewed. For that, 6 recent studies investigating 9 metal-contaminated environments (water or sediments) were selected. Of the 22 possible metal-resistance systems, only 14 were found in complex communities. These widespread and easily detected metal-resistance systems were mainly biogenic sulfide production (dsr genes), resistance mediated in the periplasm (CopK and multicopper oxidases such as PcoA/CopA), efflux proteins (HME-RND systems, P-type ATPases, and the cation diffusion facilitator CzcD) as well as proteins used to treat oxidative damages (e.g., SodA) and down-regulation of transporters. A total of 8 metal-resistance systems were not found in the complex communities investigated. These rare systems include metal resistance by phosphatases, ureases, metallophores, outer membrane vesicles, methylation genes and cytoplasmic metal accumulation systems. In this case rarity may also be explained by a lack of knowledge on the specific genes involved and/or analytical biases.


Asunto(s)
Bacterias/metabolismo , Metales/metabolismo , Citoplasma/metabolismo , Farmacorresistencia Bacteriana , Espacio Extracelular/metabolismo
12.
Environ Microbiol ; 17(6): 1991-2005, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25244307

RESUMEN

The aim of the study was to understand the effect of a long-term metal exposure (110 years) on sediment microbial communities. Two freshwater sites, Férin and MetalEurop, differing by one order of magnitude in metal levels (MetalEurop: 3218 mg Zn kg(-1) ; 913 mg Pb kg(-1) ) were compared by shotgun metaproteogenomics. A total of 69-118 Mpb of DNA and 943-1241 proteins were obtained. PhymmBL analysis of the DNA sequences indicated that the phylogenetic profile was similar in both stations and that ß-Proteobacteria were dominant. However, subtle but significant changes were observed for some bacteria: e.g. Pseudomonas (+0.4%), Leptothrix (-0.4%), Thiobacillus (+0.36%) and Acidovorax (+0.48%). Using the stamp software, the two communities were found to be functionally very similar. However, significant genetic differences (10(-6) < P < 10(-3) ) were observed for three SEED categories: synthesis of exopolymeric substances, virulence and defence mechanisms (including czcA metal efflux genes), and elements involved in horizontal gene transfer. The CzcA protein was found by metaproteomics in MetalEurop, but the levels were too low to allow comparisons. It is concluded that bacterial communities in freshwater sediments may adapt to high metal levels without broad changes in the structure of the population.


Asunto(s)
Adaptación Biológica/genética , Betaproteobacteria/genética , Sedimentos Geológicos/microbiología , Metales/metabolismo , Betaproteobacteria/clasificación , Agua Dulce , Filogenia , Proteómica , ARN Ribosómico 16S/genética
13.
Res Microbiol ; 165(8): 647-56, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25102022

RESUMEN

Pseudomonas bacteria are ubiquitous Gram-negative and aerobic microorganisms that are known to harbor metal resistance mechanisms such as efflux pumps and intracellular redox enzymes. Specific Pseudomonas bacteria have been quantified in some metal-contaminated environments, but the entire Pseudomonas population has been poorly investigated under these conditions, and the link with metal bioavailability was not previously examined. In the present study, quantitative PCR and cell cultivation were used to monitor and characterize the Pseudomonas population at 4 different sediment sites contaminated with various levels of metals. At the same time, total metals and metal bioavailability (as estimated using an HCl 1 m extraction) were measured. It was found that the total level of Pseudomonas, as determined by qPCR using two different genes (oprI and the 16S rRNA gene), was positively and significantly correlated with total and HCl-extractable Cu, Co, Ni, Pb and Zn, with high correlation coefficients (>0.8). Metal-contaminated sediments featured isolates of the Pseudomonas putida, Pseudomonas fluorescens, Pseudomonas lutea and Pseudomonas aeruginosa groups, with other bacterial genera such as Mycobacterium, Klebsiella and Methylobacterium. It is concluded that Pseudomonas bacteria do proliferate in metal-contaminated sediments, but are still part of a complex community.


Asunto(s)
Disponibilidad Biológica , Biota , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiología , Metales/metabolismo , Pseudomonas/clasificación , Pseudomonas/aislamiento & purificación , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Datos de Secuencia Molecular , Pseudomonas/genética , Pseudomonas/crecimiento & desarrollo , ARN Ribosómico 16S/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Secuencia de ADN
14.
Environ Pollut ; 189: 143-51, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24662000

RESUMEN

In bacteria a metal may be defined as bioavailable if it crosses the cytoplasmic membrane to reach the cytoplasm. Once inside the cell, specific metal resistance systems may be triggered. In this research, specific metal resistance genes were used to estimate metal bioavailability in sediment microbial communities. Gene levels were measured by quantitative PCR and correlated to metals in sediments using five different protocols to estimate dissolved, particle-adsorbed and occluded metals. The best correlations were obtained with czcA (a Cd/Zn/Co efflux pump) and Cd/Zn adsorbed or occluded in particles. Only adsorbed Co was correlated to czcA levels. We concluded that the measurement of czcA gene levels by quantitative PCR is a promising tool which may complement the classical approaches used to estimate Cd/Zn/Co bioavailability in sediment compartments.


Asunto(s)
Bacterias/genética , Farmacorresistencia Bacteriana/genética , Genes Bacterianos , Sedimentos Geológicos/química , Metales Pesados/análisis , Contaminantes Químicos del Agua/análisis , Adsorción , Metales Pesados/metabolismo , Proteínas Represoras/genética , Contaminantes Químicos del Agua/metabolismo
15.
Sci Total Environ ; 419: 98-108, 2012 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-22281039

RESUMEN

Muddy sediments of the Belgian Continental Zone (BCZ) are contaminated by metals such as Co, As, Cd, Pb, and Ni. Previous studies have suggested that mineralization of phytodetritus accumulating each year on sediments might cause secondary contaminations of the overlying seawater (metal effluxes). The aim of the present research was to investigate these effluxes using a microcosm approach. Muddy sediments were placed in microcosms (diameter: 15 cm) and overlaid by phytodetritus (a mix of Phaeocystis globosa with the diatom Skeletonema costatum). The final suspension was 130.6 mg L(-1) (dw) and the final chlorophyll a content was 750 ± 35 µg L(-1) (mean ± SD). Natural seawater was used for controls. Microcosms were then incubated in the dark at 15°C during 7 days. Metals were monitored in overlying waters and microbial communities were followed using bacterial and nanoflagellate DAPI counts, thymidine incorporation, community level physiological profiling (CLPP) and fluorescein diacetate analysis (FDA). Benthic effluxes observed in sediments exposed to phytodetritus were always more elevated than those observed in controls. Large effluxes were observed for Mn, Co and As, reaching 1084 nmol m(-2)day(-1) (As), 512 nmol m(-2)day(-1) (Co), and 755 µmol m(-2)day(-1) (Mn). A clear link was established between heterotrophic microbial activity and metal effluxes. The onset of mineralization was very fast and started within 2h of deposition as revealed by CLPP. An increased bacterial production was observed after two days (8.7 mg Cm(-2)day(-2)) and the bacterial biomass appeared controlled by heterotrophic nanoflagellates. Calculations suggest that during phytoplankton blooms the microbial activity alone may release substantial amounts of dissolved arsenic in areas of the BCZ covered by muddy sediments.


Asunto(s)
Monitoreo del Ambiente/métodos , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiología , Metales/análisis , Agua de Mar/análisis , Contaminación Química del Agua/análisis , Arsénico/análisis , Arsénico/metabolismo , Bacterias/metabolismo , Bélgica , Biomasa , Cobalto/análisis , Cobalto/metabolismo , Diatomeas/fisiología , Eucariontes/metabolismo , Fluoresceínas/química , Haptophyta/fisiología , Indoles/química , Manganeso/análisis , Manganeso/metabolismo , Metales/metabolismo , Mar del Norte , Fitoplancton/fisiología , Timidina/química
16.
Mar Pollut Bull ; 64(2): 353-62, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22153908

RESUMEN

Our current view about the relationship between metals and bacteria in marine sediments might be biased because most studies only use ex situ approaches to quantify metals. The aim of the present research was to compare ex situ and in situ methods of metal measurement (DET and DGT--diffusive equilibration or diffusive gradients in thin-films) and relate the results with two commonly used microbiological variables (bacterial biomass and bacterial diversity as revealed by DGGE). No previous studies have used such in situ approaches in microbial ecology. For biomass and most of the investigated trace metals (Ag, Cd, Sn, Cr, Ni, Cu, Pb, and Al) no significant correlations were found. The exceptions were Fe, Mn, Co, and As which behave like micronutrients. For bacterial diversity, no relevant relationships were found. We conclude that in situ methods are more adapted tools for microbial ecologists but that ex situ approaches are still necessary.


Asunto(s)
Biodiversidad , Biomasa , Monitoreo del Ambiente/métodos , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiología , Metales/análisis , Contaminantes Químicos del Agua/análisis , Técnicas de Química Analítica
17.
Environ Int ; 35(6): 885-92, 2009 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-19419767

RESUMEN

An innovative biodegradation test system was developed in order to fill the current gap for cost effective and environmentally relevant tools to assess marine biodegradability. Glass beads were colonized by a biofilm in an open flow-through system of seawater with continuous pre-exposure to Linear Alkylbenzene Sulfonate (LAS) (20 microg/L). Thereafter, such colonized beads were added as inoculum in different test systems. [(14)C]-LAS (5-100 microg/L) was added and primary and ultimate biodegradation were assessed. The bacterial density collected on the beads (10(9) bact./mL beads) was ca. 3 orders of magnitude higher than the typical seawater content. The LAS mineralization lag phase duration decreased from 55 to <1 days and the mineralization extent increased from 53 to 90% as the colonized beads volume increased from 10 to 275 mL. This is the first demonstration of marine bacteria's ability to mineralize LAS. On the opposite, less than 13% LAS was mineralized in seawater only. The colonized beads possibly enhanced the probability to encounter the full degraders' consortium in a low volume of seawater (100 mL).


Asunto(s)
Ácidos Alcanesulfónicos/metabolismo , Restauración y Remediación Ambiental/métodos , Tensoactivos/metabolismo , Bacterias/crecimiento & desarrollo , Bacterias/metabolismo , Biodegradación Ambiental , Biopelículas/crecimiento & desarrollo , Agua de Mar/química
18.
J Invertebr Pathol ; 100(2): 127-30, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19041326

RESUMEN

The bacterial community associated with skin lesions of the sea urchin Tripneustes gratilla was investigated using 16S ribosomal RNA gene cloning and fluorescent in situ hybridization (FISH). All clones were classified in the Alphaproteobacteria, Gammaproteobacteria and Cytophaga-Flexibacter-Bacteroides (CFB) bacteria. Most of the Alphaproteobacteria were related to the Roseobacter lineage and to bacteria implicated in marine diseases. The majority of the Gammaproteobacteria were identified as Vibrio while CFB represented only 9% of the total clones. FISH analyses showed that Alphaproteobacteria, CFB bacteria and Gammaproteobacteria accounted respectively for 43%, 38% and 19% of the DAPI counts. The importance of the methods used is emphasized.


Asunto(s)
Alphaproteobacteria/aislamiento & purificación , Cytophaga/aislamiento & purificación , Gammaproteobacteria/aislamiento & purificación , Erizos de Mar/microbiología , Alphaproteobacteria/clasificación , Alphaproteobacteria/fisiología , Animales , Clonación Molecular , Cytophaga/clasificación , Cytophaga/fisiología , ADN Bacteriano/química , Gammaproteobacteria/clasificación , Gammaproteobacteria/fisiología , Hibridación Fluorescente in Situ , ARN Ribosómico 16S/química
19.
Dis Aquat Organ ; 77(1): 73-82, 2007 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-17933399

RESUMEN

The microbiota of the body wall lesions of the echinoid Tripneustes gratilla, initiated by the grazing action of the parasitic gastropod Vexilla vexillum, was investigated with a pluridisciplinary approach. Parasitised sea urchins showed body wall lesions strongly infected by bacteria that progressed through the test and reached the coelomic cavity after ca. 1 mo. We report here on the bacterial community observed in lesions of echinoids collected in situ and on the bacteria that successively appeared during laboratory experiments. Two Alphaproteobacteria, a CFB (Cytophaga-Flavobacterium-Bacteroides) bacterium, 3 Vibrio species and Exiguobacterium aestuarii were identified in the field-collected lesions by 16S rDNA sequencing. The last 4 bacteria were cultured and each induced the disease when inoculated on scalpel-made wounds, with 100% of the individuals infected within 2 d. Scalpel-induced scarifications tended to heal within 3 wk, while gastropod-induced lesions evolved into disease, suggesting a role of Vexilla vexillum in the development of the infection. Denaturing gradient gel electrophoresis (DGGE) and sequencing suggest that (1) bacteria associated with healthy integument were not present in the lesions and were thus not responsible for their infection, (2) Alphaproteobacteria with close phylogenetic affiliation with other bacteria involved in several diseases affecting marine invertebrates were present, and (3) these Alphaproteobacteria were present from the beginning of the infection and appeared earlier in the infection than other bacteria such as CFB bacteria.


Asunto(s)
Bacterias/aislamiento & purificación , Erizos de Mar/microbiología , Animales , Bacterias/clasificación , Bacterias/genética , Bacterias/crecimiento & desarrollo , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Caracoles/fisiología , Factores de Tiempo
20.
Nature ; 447(7142): 307-11, 2007 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-17507981

RESUMEN

Shallow marine benthic communities around Antarctica show high levels of endemism, gigantism, slow growth, longevity and late maturity, as well as adaptive radiations that have generated considerable biodiversity in some taxa. The deeper parts of the Southern Ocean exhibit some unique environmental features, including a very deep continental shelf and a weakly stratified water column, and are the source for much of the deep water in the world ocean. These features suggest that deep-sea faunas around the Antarctic may be related both to adjacent shelf communities and to those in other oceans. Unlike shallow-water Antarctic benthic communities, however, little is known about life in this vast deep-sea region. Here, we report new data from recent sampling expeditions in the deep Weddell Sea and adjacent areas (748-6,348 m water depth) that reveal high levels of new biodiversity; for example, 674 isopods species, of which 585 were new to science. Bathymetric and biogeographic trends varied between taxa. In groups such as the isopods and polychaetes, slope assemblages included species that have invaded from the shelf. In other taxa, the shelf and slope assemblages were more distinct. Abyssal faunas tended to have stronger links to other oceans, particularly the Atlantic, but mainly in taxa with good dispersal capabilities, such as the Foraminifera. The isopods, ostracods and nematodes, which are poor dispersers, include many species currently known only from the Southern Ocean. Our findings challenge suggestions that deep-sea diversity is depressed in the Southern Ocean and provide a basis for exploring the evolutionary significance of the varied biogeographic patterns observed in this remote environment.


Asunto(s)
Biodiversidad , Geografía , Agua de Mar , Animales , Regiones Antárticas , Invertebrados/clasificación , Invertebrados/fisiología , Biología Marina , Océanos y Mares , Filogenia
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