Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins.

Krill are vital as food for many marine animals but also impacted by global warming. To learn how they and other zooplankton may adapt to a warmer world we studied local adaptation in the widespread Northern krill (Meganyctiphanes norvegica). We assemble and characterize its large genome and compare genome-scale variation among 74 specimens from the colder Atlantic Ocean and warmer Mediterranean Sea. The 19 Gb genome likely evolved through proliferation of retrotransposons, now targeted for inactivation by extensive DNA methylation, and contains many duplicated genes associated with molting and vision. Analysis of 760 million SNPs indicates extensive homogenizing gene-flow among populations. Nevertheless, we detect signatures of adaptive divergence across hundreds of genes, implicated in photoreception, circadian regulation, reproduction and thermal tolerance, indicating polygenic adaptation to light and temperature. The top gene candidate for ecological adaptation was nrf-6, a lipid transporter with a Mediterranean variant that may contribute to early spring reproduction. Such variation could become increasingly important for fitness in Atlantic stocks. Our study underscores the widespread but uneven distribution of adaptive variation, necessitating characterization of genetic variation among natural zooplankton populations to understand their adaptive potential, predict risks and support ocean conservation in the face of climate change.

Biochemical characteristics of zooplankton entering Atlantic mackerel processing plants in Iceland as side-catch.

The Northeast Atlantic mackerel (Scomber scombrus) is a zooplanktivorous fish with its main summer feeding grounds in the waters around Iceland. The zooplankton in the stomachs of the caught fish causes several problems during processing due to the high enzyme activity of the zooplankton. The aim of the study was to evaluate the chemical characteristics of zooplankton that accompanies mackerel as a side-catch and stomach fullness as affected by catching year, season, catching zone, and catching method over three mackerel seasons from 2016 to 2018. Species identification by the fatty acid tropic marker method (FATM) was also applied within the zooplankton rich side-stream. FATM analysis indicated that the majority of the zooplankton mass belonged to Calanus finmarchicus. The lipid composition of the zooplankton rich side-stream varied between years but was rich in monounsaturated, as well as polyunsaturated fatty acids (PUFA), such as eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). The results suggest that the zooplankton rich side-stream from mackerel caught in Icelandic waters has the potential for further sustainable processing into valuable nutrients.

Remote sensing of zooplankton swarms.

Zooplankton provide the key link between primary production and higher levels of the marine food web and they play an important role in mediating carbon sequestration in the ocean. All commercially harvested fish species depend on zooplankton populations. However, spatio-temporal distributions of zooplankton are notoriously difficult to quantify from ships. We know that zooplankton can form large aggregations that visibly change the color of the sea, but the scale and mechanisms producing these features are poorly known. Here we show that large surface patches (>1000 km2) of the red colored copepod Calanus finmarchicus can be identified from satellite observations of ocean color. Such observations provide the most comprehensive view of the distribution of a zooplankton species to date, and alter our understanding of the behavior of this key zooplankton species. Moreover, our findings suggest that high concentrations of astaxanthin-rich zooplankton can degrade the performance of standard blue-green reflectance ratio algorithms in operational use for retrieving chlorophyll concentrations from ocean color remote sensing.

Distribution, maturity and population structure of Meganyctiphanes norvegica and Thysanoessa inermis around Iceland in spring.

This study aims to explain the distribution, maturity and population structure of Meganyctiphanes norvegica and Thysanoessa inermis in springtime in relation to main hydrographic regions around Iceland: Atlantic in the southwest, Atlantic-Arctic mixture in the north and Arctic in the east. Krill were collected 14-29 May 2013 using a macrozooplankton trawl. Biomass of both species combined was significantly higher in the southwest than in north and east. M. norvegica clearly dominated in Atlantic waters, whereas T. inermis was more evenly distributed around the island, while the highest values were also observed in the southwest for this species. Simple linear regressions showed that the abundance of M. norvegica was positively related to temperature, salinity and phytoplankton concentration, while the abundance of T. inermis was negatively related to bathymetry. Multiple linear regression analyses did not add to this information of a positive relationship between abundance and temperature for M. norvegica, while T. inermis was shown to be negatively related to both temperature and bathymetry. During the latter half of May, the main spawning of both species was confined to the regions off the southwest coast. Sex ratio (males/females) of M. norvegica was higher in the southwest than in the north and east, whereas T. inermis showed a similar sex ratio all around the island. In all regions, M. norvegica appears to have a lifespan of 2 years while T. inermis of 1 year in the southwest and possibly 2 years in north and east.