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Quantum emitters in two-dimensional layered hexagonal boron nitride are quickly emerging as a highly promising platform for next-generation quantum technologies. However, the precise identification and control of defects are key parameters to achieve the next step in their development. We conducted a comprehensive study by analyzing over 10,000 photoluminescence emission lines from liquid exfoliated hBN nanoflake samples, revealing 11 narrow sets of defect families within the 1.6 to 2.2 eV energy range. This challenges hypotheses of a random energy distribution. We also reported averaged defect parameters, including emission line widths, spatial density, phonon side bands, and Franck-Condon-related factors. These findings provide valuable insights into deciphering the microscopic origin of emitters in hBN hosts. We also explored the influence of the hBN host morphology on defect family formation, demonstrating its crucial impact. By tuning the flake size and arrangement, we achieve selective control of defect types while maintaining high spatial density. This offers a scalable approach to defect emission control, diverging from costly engineering methods. It emphasizes the significance of the morphological aspects of hBN hosts for gaining insights into defect origins and expanding their spectral control.
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Single-molecule techniques are highly sensitive tools that can reveal reaction intermediates often obscured in experiments involving large ensembles of molecules. Therefore, they provide unprecedented information on the mechanisms that control biomolecular reactions. Currently, one of the most significant single-molecule assays is Magnetic Tweezers (MT), which probes enzymatic reactions at high spatio-temporal resolutions on tens, if not hundreds, of molecules simultaneously. For high-resolution MT experiments, a short double-stranded DNA molecule (less than 2000 base pairs) is typically attached between a micron-sized superparamagnetic bead and a surface. The fabrication of such a substrate is key for successful single-molecule assays, and several papers have discussed the possibility of improving the fabrication of short DNA constructs. However, reported yields are usually low and require additional time-consuming purification steps (e.g., gel purification). In this paper, we propose the use of a Golden Gate Assembly assay that allows for the production of DNA constructs within minutes (starting from PCR products). We discuss how relevant parameters may affect the yield and offer single-molecule experimentalists a simple yet robust approach to fabricate DNA constructs.
Asunto(s)
ADN , ADN/química , Magnetismo , Imagen Individual de Molécula/métodos , Pinzas ÓpticasRESUMEN
The aggregation behavior of an attractive colloidal silica suspension under oscillatory flow is studied using rheological measurement. We show that the competition between the aggregation of the particles and the aggregate breakup under external stress leads to a non-monotonous evolution of the elastic modulus with time. Remarkably, under certain conditions, the elasticity is not an increasing function of time but exhibits a maximum. The value of the maximum of the elastic modulus depends on the applied shear amplitude and the ionic strength of the suspension. Scaling laws that describes the evolutions of the elastic modulus as a function of the salinity and of the deformation amplitude are proposed and discussed.
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Cinética , Suspensiones , Elasticidad , Módulo de Elasticidad , ReologíaRESUMEN
The mechanical nonlinear response of dense Brownian suspensions of polymer gel particles is studied experimentally and by means of numerical simulations. It is shown that the response to the application of a constant shear rate depends on the previous history of the suspension. When the flow starts from a suspension at rest, it exhibits an elastic response followed by a stress overshoot and then a plastic flow regime. Conversely, after flow reversal, the stress overshoot does not occur, and the apparent elastic modulus is reduced while numerical simulations reveal that the anisotropy of the local microstructure is delayed relative to the macroscopic stress.
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Controlling supramolecular polymerization is of fundamental importance to create advanced materials and devices. Here we show that the thermodynamic equilibrium of Gd3+-bearing supramolecular rod networks is shifted reversibly at room temperature in a static magnetic field of up to 2 T. Our approach opens opportunities to control the structure formation of other supramolecular or coordination polymers that contain paramagnetic ions.
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We investigate the flow of a concentrated suspension of colloidal particles at deformation rates higher than the discontinuous shear-thickening transition shear rate. We show that, under its own weight, a jet of a concentrated enough colloidal suspension, simultaneously flows while it sustains tensile stress and transmits transverse waves. This results in a new flow instability of jets of shear-thickening suspensions: the jet is submitted to rapid transverse oscillations, that we characterize.
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Ru(bpy)2dppz2+ has been widely used as a probe for exploring the structure of double-stranded DNA (dsDNA). The flexibility change of DNA helix is important in many of its biological functions but not well understood. Here, flexibility change of dsDNA helix caused by intercalation with Ru(bpy)2dppz2+ was investigated using the atomic force microscopy. At first, the interactions between ruthenium complex and dsDNA helix were characterized and the binding site size (p = 2.87 bp) and binding constant (Ka = 5.9 * 107 M-1) were determined by the relative extension of DNA helix using the equation of McGhee and von Hippel. By measuring intercalator-induced DNA elongation and the mean square of end-to-end distance at different molar ratios of Ru(bpy)2dppz2+ to dsDNA, the changes of persistence length under different ruthenium concentrations were determined by the worm-like chain model. We found that the persistence length of dsDNA decreased with increasing Ru(bpy)2dppz2+ concentration, demonstrating that the flexibility of dsDNA obviously enhanced due to the intercalation. Especially, the persistence length changed greatly from 54 to 34 nm on changing the molar ratio of ruthenium to dsDNA from 0 to 0.2. We speculated that the intercalation of dsDNA with Ru(bpy)2dppz2+ resulted in local deformation or bending of the DNA duplex. In addition, the thermal dynamic stability of DNA helix was measured with high resolution melting method which revealed the increase in thermal dynamic stability of DNA helix due to the ruthenium intercalation.
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Electrospinning is the process of choice allowing the preparation of nanofibrous materials from a solution usually based on a high molar mass polymer. The solution must bring enough chain entanglements to avoid any breaking or Rayleigh instability of the electrospun jet resulting thus in the deposition of a continuous and regular solid nanofibre. It has been however shown that some few non-polymeric molecules can be electrospun without using a carrier polymer. We demonstrate here the case of tannic acid. Indeed, it was possible to electrospin this molecule solubilised in a mixture of water and ethanol as well as in pure water. Rheology, dynamic light scattering and cryo-TEM highlight the formation of tannic acid aggregates in solution. Above a critical concentration, these aggregates form a supramolecular interconnected network strong enough to allow the electrospinning of a continuous and regular nanofibre. The resulting nanoweb is mechanically stable and can be handled and wrapped. Furthermore, as opposed to the other small molecules for which polymer-free electrospinning was also demonstrated, tannic acid nanowebs can be efficiently cross-linked in water either by oxidative reaction with sodium periodate or, most interestingly, with FeIII by a combination of oxidative reaction and the formation of coordination complexes. The proposed electrospinning and cross-linking strategy is easy, of low cost, and scalable and uses non-toxic solvents as well as biocompatible and biofunctional molecules. Furthermore, thanks to the chelation capacity of tannic acid having the ability to coordinate with a wide variety of metals, hybrid smart nanowebs can be envisaged for diverse applications such as biomedical, catalysis as well as environment.
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Traction Force Microscopy (TFM) computes the forces exerted at the surface of an elastic material by measuring induced deformations in volume. It is used to determine the pattern of the adhesion forces exerted by cells or by cellular assemblies grown onto a soft deformable substrate. Typically, colloidal particles are dispersed in the substrate and their displacement is monitored by fluorescent microscopy. As with any other fluorescent techniques, the accuracy in measuring a particule's position is ultimately limited by the number of evaluated fluorescent photons. Here, we present a TFM technique based on the detection of probe particle displacements by holographic tracking microscopy. We show that nanometer scale resolutions of the particle displacements can be obtained and determine the maximum volume fraction of markers in the substrate. We demonstrate the feasibility of the technique experimentally and measure the three-dimensional force fields exerted by colorectal cancer cells cultivated onto a polyacrylamide gel substrate.
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In this paper, the pitting of potato starch granules in aqueous suspensions (1%) by high-frequency high-power ultrasound (850kHz at a power of 0.2W, 2W or 3.7W; and also 500kHz and 1MHz at a power of 2W) is reported. The number of pits per starch granules was found to be independent of the amylose content of starches, and the surface properties of starch granules as modified through SDS and ethanol washing. At 850kHz, the maximum number of pits per starch granule, for both normal and waxy starches, did not exceed 11. However, a close inspection of fractionated starch granules based on their sizes showed that there is an optimum granule size for which a maximum pit number is obtained. For example, starch granules with diameter size range of â¼15 to â¼30µm had a maximum pit number (between 10 and 20 pits per granule) when sonicated (2W, 850kHz and 30min); while sonication of small (<10µm) and very large (>45µm) granules resulted in a smaller number of pits per granule (â¼5). Further, the maximum number of pits per granules is also found to be proportional to the ultrasound frequency, with values of approximately 7, 10 and 11 at 0.50, 0.85, and 1MHz, respectively. FTIR measurements did not show any breakup of starch molecules.
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Solanum tuberosum/química , Sonicación , Almidón/química , Amilosa/análisis , Tamaño de la Partícula , Propiedades de Superficie , Agua/químicaRESUMEN
We study the imbibition of a spherical porous aggregate. When the difference in pressure between the inside and the outside of the aggregate is large enough, the imbibition front becomes unstable. This instability leads to the acceleration of the imbibition process. In more complex geometries with non-constant curvatures, the imbibition becomes locally unstable in the regions with the highest curvatures, leading to spatially heterogeneous front velocities.
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We use Förster Resonant Energy Transfer (FRET) in order to measure the increase of flexibility of short ds-DNA induced by the intercalation of dipyridophenazine (dppz) ligand in between DNA base pairs. By using a DNA double strand fluorescently labeled at its extremities, it is shown that the end-to-end length increase of DNA due to the intercalation of one dppz ligand is smaller than the DNA base pair interdistance. This may be explained either by a local bending of the DNA or by an increase of its flexibility. The persistence length of the formed DNA/ligand is evaluated. The described structure may have implications in the photophysical damages induced by the complexation of DNA by organometallic molecules.
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Interactions between DNA and ruthenium organometallic compounds are studied by using visible light absorption and circular dichroism measurements. A titration technique allowing for the absolute determination of the advancement degree of the complexation, without any assumption about the number of complexation modes is developed. When DNA is in excess, complexation involves intercalation of one of the organometallic compound ligands between DNA base pairs. But, in the high complexation ratio limit, where organometallic compounds are in excess relative to the DNA base pairs, a new mode of interaction is observed, in which the organometallic compound interacts weakly with DNA. The weak interaction mode, moreover, develops when all the DNA intercalation sites are occupied. A regime is reached in which one DNA base pair is linked to more than one organometallic compound.
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ADN/química , Compuestos Organometálicos/química , Rutenio/química , Dicroismo Circular , Conformación Molecular , Compuestos Organometálicos/síntesis química , Espectrofotometría UltravioletaRESUMEN
The synthesis of a new Ru(II) complex is reported. Its absorption spectrum when interacting with DNA in water was calculated at the hybrid quantum mechanics molecular mechanics level of theory and compared with experimental data. The vertical transitions were computed using time-dependent density functional theory in the linear response approximation. The complex and its environment were treated at the quantum mechanical and molecular mechanical levels, respectively. The effects of the environment were investigated in detail and conveniently classified into electrostatic and polarization effects. The latter were modeled using the computationally inexpensive "electronic response of the surroundings" method. It was found that the main features of the experimental spectrum are nicely reproduced by the theoretical calculations. Moreover, analysis of the most intense transitions utilizing the natural transition orbital formalism revealed important insights into their nature and their potential role in the irreversible oxidation of DNA, a phenomenon that could be relevant in the field of cancer therapy.
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Complejos de Coordinación/química , ADN Forma B/química , Simulación de Dinámica Molecular , Compuestos Organometálicos/química , Rutenio/química , Espectrofotometría/métodos , Complejos de Coordinación/síntesis química , Complejos de Coordinación/metabolismo , ADN Forma B/metabolismo , Sustancias Intercalantes/química , Sustancias Intercalantes/metabolismo , Modelos Químicos , Estructura Molecular , Conformación de Ácido Nucleico , Compuestos Organometálicos/síntesis química , Compuestos Organometálicos/metabolismo , Teoría Cuántica , Electricidad Estática , Agua/químicaRESUMEN
Organometallic compounds which contain metals, such as ruthenium or gold, have been investigated as a replacement for platinum-derived anticancer drugs. They often show good antitumor effects, but the identification of their precise mode of action or their pharmacological optimization is still challenging. We have previously described a class of ruthenium(II) compounds with interesting anticancer properties. In comparison to cisplatin, these molecules have lower side effects, a reduced ability to interact with DNA, and they induce cell death in absence of p53 through CHOP/DDIT3. We have now optimized these molecules by improving their cytotoxicity and their water solubility. In this article, we demonstrate that by changing the ligands around the ruthenium we modify the ability of the compounds to interact with DNA. We show that these optimized molecules reduce tumor growth in different mouse models and retain their ability to induce CHOP/DDIT3. However, they are more potent inducers of cancer cell death and trigger the production of reactive oxygen species and the activation of caspase 8. More importantly, we show that blocking reactive oxygen species production or caspase 8 activity reduces significantly the activity of the compounds. Altogether our data suggest that water-soluble ruthenium(II)-derived compounds represent an interesting class of molecules that, depending on their structures, can target several pro-apoptotic signaling pathways leading to reactive oxygen species production and caspase 8 activation.
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Antineoplásicos/farmacología , Caspasa 8/biosíntesis , Especies Reactivas de Oxígeno/metabolismo , Compuestos de Rutenio/farmacología , Agua/química , Animales , Línea Celular Tumoral , Ensayos de Selección de Medicamentos Antitumorales , Inducción Enzimática , Transferencia Resonante de Energía de Fluorescencia , Humanos , Potencial de la Membrana Mitocondrial/efectos de los fármacos , Reacción en Cadena en Tiempo Real de la Polimerasa , Compuestos de Rutenio/química , SolubilidadRESUMEN
The UV/Visible absorption properties of a polypyridyl ruthenium complex upon intercalation on DNA are studied at the mixed quantum mechanics molecular mechanics level of theory. Vertical excitation transitions are computed by time dependent density functional theory. Particular emphasis is put on the different levels at which the macromolecular environment is treated, and in particular on the analysis of the effect of mechanical, electrostatic and polarizable embedding. We show that with the highest level of theory the experimental absorption wavelengths are reproduced with a difference of only 2 or 3 nm for the low energy bands. The systematic analysis of the individual vertical transitions allows us to get much more insights into the role played by the environment, in particular, in metal to ligand and intra ligand charge transfer transitions that can lead to the production of DNA oxidative lesions exploitable in phototherapy.
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ADN/química , Compuestos Organometálicos/química , Fenazinas/química , Teoría Cuántica , Modelos Moleculares , Estructura Molecular , Compuestos Organometálicos/síntesis química , Fenazinas/síntesis química , Espectrofotometría UltravioletaRESUMEN
A simple light microscopic technique was developed in order to quantify the damage inflicted by high-power low-frequency ultrasound (0-160 W, 20 kHz) treatment on potato starch granules in aqueous dispersions. The surface properties of the starch granules were modified using ethanol and SDS washing methods, which are known to displace proteins and lipids from the surface of the starch granules. The study showed that in the case of normal and ethanol-washed potato starch dispersions, two linear regions were observed. The number of defects first increased linearly with an increase in ultrasound power up to a threshold level. This was then followed by another linear dependence of the number of defects on the ultrasound power. The power threshold where the change-over occurred was higher for the ethanol-washed potato dispersions compared to non-washed potato dispersions. In the case of SDS-washed potato starch, although the increase in defects was linear with the ultrasound power, the power threshold for a second linear region was not observed. These results are discussed in terms of the different possible mechanisms of cavitation induced-damage (hydrodynamic shear stresses and micro-jetting) and by taking into account the hydrophobicity of the starch granule surface.
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Solanum tuberosum/química , Solanum tuberosum/efectos de la radiación , Sonicación/métodos , Almidón/efectos de la radiación , Almidón/ultraestructura , Relación Dosis-Respuesta en la Radiación , Ondas de Choque de Alta Energía , Microscopía , Dosis de Radiación , Solanum tuberosum/citologíaRESUMEN
Because many anticancer drugs interact with DNA, the determination of their association constants to DNA is essential for quantifying their mechanisms of action. The interactions between a new ruthenium-derived compound [ruthenium(phenanthroline)(κ-C,N-(2-phenyl-pyridine)(NCMe)(2)]PF(6), called RDC11] and DNA are studied using different techniques. Fluorescent experiments are used to determine the association and dissociation constants under different salt concentrations. The binding is shown to be reversible and noncovalent. The association constants vary from 1.5 × 10(6) M(-1) to 2.9 × 10(3) M(-1) when increasing the sodium concentration from 0.1 to 200 mM. Single-molecule stretching methods are used to study the interaction of RDC with longer DNA strands (8.6 kbp home-built dimer of pBR322). The affinities of RDC with DNA under different loads are obtained using McGhee and von Hippel analysis. The affinity constant and thermodynamic parameters are in good agreement with the values found in the literature and lead to the conclusion that this molecule intercalates dsDNA.
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Antineoplásicos/química , Antineoplásicos/metabolismo , ADN/metabolismo , Compuestos Organometálicos/química , Compuestos Organometálicos/metabolismo , Rutenio/química , ADN/química , Modelos Moleculares , Conformación de Ácido Nucleico , Pinzas Ópticas , Sales (Química)/química , Electricidad Estática , Especificidad por SustratoRESUMEN
Spatiotemporal correlations in start-up flows of attractive colloids are explored by numerical simulations as a function of their volume fraction and shear rate. The suspension is first allowed to flocculate during a time tw, then the stress necessary to induce its flow is computed. We find that, at low volume fractions, the stress is a universal function of the strain. On the contrary, at high volume fractions, this scaling behavior is no longer observed and a supplementary stress becomes necessary to induce flow. To better understand the physical origin of the supplementary stress, we examine the creation, disruption, and orientation of contacts between the particles and the corresponding contribution to stress as a function of strain. Our simulations show that the onset of flow is dominated by the creation of contacts between the particles at low shear rates and by their disruption at high shear rates. However, neither the evolution of the number of contacts with strain nor their orientation can fully account for the nonscaling behavior of the stress at high volume fractions. At small strains, the relative importance of forcing in the compression quadrant increases with volume fraction and with flocculation time. This mechanism of stress transmission through the compression quadrant is not accounted for in the usual description of yield stress, which considers the breaking of bonds oriented in the extension quadrant.