Multi-year aboveground data of minirhizotron facilities in Selhausen.

Improved understanding of crops' response to soil water stress is important to advance soil-plant system models and to support crop breeding, crop and varietal selection, and management decisions to minimize negative impacts. Studies on eco-physiological crop characteristics from leaf to canopy for different soil water conditions and crops are often carried out at controlled conditions. In-field measurements under realistic field conditions and data of plant water potential, its links with CO2 and H2O gas fluxes, and crop growth processes are rare. Here, we presented a comprehensive data set collected from leaf to canopy using sophisticated and comprehensive sensing techniques (leaf chlorophyll, stomatal conductance and photosynthesis, canopy CO2 exchange, sap flow, and canopy temperature) including detailed crop growth characteristics based on destructive methods (crop height, leaf area index, aboveground biomass, and yield). Data were acquired under field conditions with contrasting soil types, water treatments, and different cultivars of wheat and maize. The data from 2016 up to now will be made available for studying soil/water-plant relations and improving soil-plant-atmospheric continuum models.

Heritable microbiome variation is correlated with source environment in locally adapted maize varieties.

Beneficial interactions with microorganisms are pivotal for crop performance and resilience. However, it remains unclear how heritable the microbiome is with respect to the host plant genotype and to what extent host genetic mechanisms can modulate plant-microbiota interactions in the face of environmental stresses. Here we surveyed 3,168 root and rhizosphere microbiome samples from 129 accessions of locally adapted Zea, sourced from diverse habitats and grown under control and different stress conditions. We quantified stress treatment and host genotype effects on the microbiome. Plant genotype and source environment were predictive of microbiome abundance. Genome-wide association analysis identified host genetic variants linked to both rhizosphere microbiome abundance and source environment. We identified transposon insertions in a candidate gene linked to both the abundance of a keystone bacterium Massilia in our controlled experiments and total soil nitrogen in the source environment. Isolation and controlled inoculation of Massilia alone can contribute to root development, whole-plant biomass production and adaptation to low nitrogen availability. We conclude that locally adapted maize varieties exert patterns of genetic control on their root and rhizosphere microbiomes that follow variation in their home environments, consistent with a role in tolerance to prevailing stress.

Ambient aerosols increase stomatal transpiration and conductance of hydroponic sunflowers by extending the hydraulic system to the leaf surface.

Introduction: Many atmospheric aerosols are hygroscopic and play an important role in cloud formation. Similarly, aerosols become sites of micro-condensation when they deposit to the upper and lower surfaces of leaves. Deposited salts, in particular can trigger condensation at humidities considerably below atmospheric saturation, according to their hygroscopicity and the relative humidity within the leaf boundary layer. Salt induced water potential gradients and the resulting dynamics of concentrated salt solutions can be expected to affect plant water relations. Methods: Hydroponic sunflowers were grown in filtered (FA) and unfiltered, ambient air (AA). Sap flow was measured for 18 days and several indicators of incipient drought stress were studied. Results: At 2% difference in mean vapor pressure deficit (D), AA sunflowers had 49% higher mean transpiration rates, lower osmotic potential, higher proline concentrations, and different tracer transport patterns in the leaf compared to FA sunflowers. Aerosols increased plant conductance particularly at low D. Discussion: The proposed mechanism is that thin aqueous films of salt solutions from deliquescent deposited aerosols enter into stomata and cause an extension of the hydraulic system. This hydraulic connection leads - parallel to stomatal water vapor transpiration - to wick-like stomatal loss of liquid water and to a higher impact of D on plant water loss. Due to ample water supply by hydroponic cultivation, AA plants thrived as well as FA plants, but under more challenging conditions, aerosol deposits may make plants more susceptible to drought stress.

Using the Taguchi experimental design for assessing within-field variability of surface run-off and soil erosion risk.

Water erosion is one of the soil degradation processes driven by environmental and field factors such as rainfall intensity, slope gradient, dynamics of vegetation cover, soil characteristics, and management practices. Most of the studies assess the separate contribution of these factors under controlled conditions. However, there is a lack of adequate knowledge regarding the complex interactions between prevailing factors and soil erosion processes under heterogeneous field conditions. This study investigated 16 combinations of 5 factors at 4 levels of each factor on the soil erosion process using Taguchi's fractional factorial experiment design, identifying the factor combinations resulting in maximum sediment yield, runoff, organic carbon, and nitrogen losses. We considered the factors: Soil organic matter and silt content (SiltOM), vegetation cover (VC), slope steepness (SS), rainfall intensity (RI), and depth to a loamy layer (DLL). The interactive effects of these factors and their combinations were visualized from the analysis of signal-to-noise (S/N) responses. Results indicated that interactions between the selected factors and soil erosion processes exist and multiple linear regression models were developed to predict sediment yields, runoff, carbon, and nitrogen losses at the sub-field scale. Results revealed that 1) RI with 40.6% showed the highest contribution to sediment yield followed by SS (23.8%), VC (17.74%), SiltOM (14.77%), and DLL (3.17%), indicating a strong rainfall-erosion relationship; 2) the combination of levels of factors generating highest sediment yield was determined; 3) A simple multiple linear regression model developed for predicting local sediment yield showed the highest agreement with field observations (R2 = 82.5%). The findings suggest that Taguchi design could be used reliably for modeling soil erosion at field and sub-field scales. Using local calibration data such models have great potential for soil erosion risk assessments at the field scale, especially in areas where contributing factors and factor levels change at small spatial scales.

Deep Learning for Non-Invasive Diagnosis of Nutrient Deficiencies in Sugar Beet Using RGB Images.

In order to enable timely actions to prevent major losses of crops caused by lack of nutrients and, hence, increase the potential yield throughout the growing season while at the same time prevent excess fertilization with detrimental environmental consequences, early, non-invasive, and on-site detection of nutrient deficiency is required. Current non-invasive methods for assessing the nutrient status of crops deal in most cases with nitrogen (N) deficiency only and optical sensors to diagnose N deficiency, such as chlorophyll meters or canopy reflectance sensors, do not monitor N, but instead measure changes in leaf spectral properties that may or may not be caused by N deficiency. In this work, we study how well nutrient deficiency symptoms can be recognized in RGB images of sugar beets. To this end, we collected the Deep Nutrient Deficiency for Sugar Beet (DND-SB) dataset, which contains 5648 images of sugar beets growing on a long-term fertilizer experiment with nutrient deficiency plots comprising N, phosphorous (P), and potassium (K) deficiency, as well as the omission of liming (Ca), full fertilization, and no fertilization at all. We use the dataset to analyse the performance of five convolutional neural networks for recognizing nutrient deficiency symptoms and discuss their limitations.

Climate change effect on wheat phenology depends on cultivar change.

Changing crop phenology is considered an important bio-indicator of climate change, with the recent warming trend causing an advancement in crop phenology. Little is known about the contributions of changes in sowing dates and cultivars to long-term trends in crop phenology, particularly for winter crops such as winter wheat. Here, we analyze a long-term (1952-2013) dataset of phenological observations across western Germany and observations from a two-year field experiment to directly compare the phenologies of winter wheat cultivars released between 1950 and 2006. We found a 14-18% decline in the temperature sum required from emergence to flowering for the modern cultivars of winter wheat compared with the cultivars grown in the 1950s and 1960s. The trends in the flowering day obtained from a phenology model parameterized with the field observations showed that changes in the mean temperature and cultivar properties contributed similarly to the trends in the flowering day, whereas the effects of changes in the sowing day were negligible. We conclude that the single-cultivar concept commonly used in climate change impact assessments results in an overestimation of winter wheat sensitivity to increasing temperature, which suggests that studies on climate change effects should consider changes in cultivars.