Who Let the Dogs Out? A Plea for Official Guidelines on Service Animals in the Teaching Laboratory.

Microbiology teaching labs provide the opportunity for students to develop marketable skills while observing the microbial inhabitants of our planet as they grow, ferment, and produce colorful by-products. Emphasizing safe laboratory practices is an essential part of this education, but occasionally situations that challenge safety paradigms arise. We describe here a recent incident in which a student brought a guide dog-in-training to her microbiology lab, causing a scramble to provide "reasonable" accommodations. Following time-consuming consultations with Disability Services for Students, Human Resources, Risk Management, and Legal Counsel, it was determined that the student had no disability herself and was not actually a certified guide-dog trainer. This deceptive behavior is not acceptable in general but is especially dangerous in a microbiology lab where safe lab practices are essential. Ultimately it was agreed that the microbiology lab is not a public space but rather a restricted space that requires closed toed shoes and personal protective equipment. Thus it is not possible to admit animals that are not fully trained, as this can endanger both the animal and the other students in the laboratory. The intent is not to limit opportunities for the truly disabled but rather to keep every student safe. Our objective is to bring attention to this complex issue in hopes that the American Society for Microbiology or other prominent scientific organizations will establish clear guidelines to educate students, faculty, administrators, and the general public on the challenges and dangers associated with guide dogs in a microbiology laboratory.

Evaluating the performance of carboxylate platform fermentations across diverse inocula originating as sediments from extreme environments.

To test the hypothesis that microbial communities from saline and thermal sediment environments are pre-adapted to exhibit superior fermentation performances, 501 saline and thermal samples were collected from a wide geographic range. Each sediment sample was screened as inoculum in a 30-day batch fermentation. Using multivariate statistics, the capacity of each community was assessed to determine its ability to degrade a cellulosic substrate and produce carboxylic acids in the context of the inoculum sediment chemistry. Conductance of soils was positively associated with production of particular acids, but negatively associated with conversion efficiency. In situ sediment temperature and conversion efficiency were consistently positively related. Because inoculum characteristics influence carboxylate platform productivity, optimization of the inoculum is an important and realistic goal.

Comparison of three screening methods to select mixed-microbial inoculum for mixed-acid fermentations.

Using a mixed culture of microorganisms, the carboxylate platform converts biomass into hydrocarbons and chemicals. To develop a method that identifies the highest performing inoculum for carboxylate fermentations, five bacterial communities were screened and ranked by three fermentation performance tests: (1) 30-day batch screen, (2) 28-day continuum particle distribution model (CPDM), and (3) 5-month continuous countercurrent fermentation trains. To screen numerous inocula sources, these tests were used sequentially in an aseptic environment. For the batch-fermentation screen, Inoculum 1 achieved the highest conversion. For the CPDM evaluation, the operating map for Inoculum 1 had the highest performance. For the continuous countercurrent fermentation, the train resulting from Inoculum 1 was among the best performers. This study suggests that the three screens are a useful and predictive method for choosing optimal inocula sources. The bacterial community with optimal performance in these three screens could be considered for use in commercial-scale fermentations.

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments.

Studies of hypersaline ecosystems often yield novel organisms and contribute to our understanding of extreme environments. Soils and sediments from La Sal del Rey, a previously uncharacterized, hypersaline lake located in southern Texas, USA, were surveyed to characterize the structure and diversity of their microbial communities. Samples were collected along a transect that spanned vegetated uplands, exposed lakebed sediments, and water-logged locations, capturing a wide range of environments and physical and chemical gradients. Community quantitative PCR (qPCR) was used in combination with tag-encoded pyrosequencing, 16S rRNA gene cloning, and Sanger sequencing to characterize the lake's soil and sediment microbial communities. Further, we used multivariate statistics to identify the relationships shared between sequence diversity and heterogeneity in the soil environment. The overall microbial communities were surprisingly diverse, harboring a wide variety of taxa, and sharing significant correlations with site water content, phosphorus and total organic carbon concentrations, and pH. Some individual populations, especially of Archaea, also correlated with sodium concentration and electrical conductivity salinity. Across the transect, Bacteria were numerically dominant relative to Archaea, and among them, three phyla--the Proteobacteria, Bacteroidetes, and Firmicutes--accounted for the majority of taxa detected. Although these taxa were detected with similar abundances to those described in other hypersaline ecosystems, the greater depth of sequencing achieved here resulted in the detection of taxa not described previously in hypersaline sediments. The results of this study provide new information regarding a previously uncharacterized ecosystem and show the value of high-throughput sequencing in the study of complex ecosystems.