Recovery from Mosaic Caused by Sorghum Mosaic Virus in Sugarcane and Impact on Yield.

Mosaic is a historically important viral disease of sugarcane in Louisiana caused by Sugarcane mosaic virus and, currently, by Sorghum mosaic virus (SrMV). Sugarcane clones can have variable responses to mosaic for different traits, including susceptibility to infection and yield loss. Disease incidence and rate of increase within a multiple-year crop cycle is affected by susceptibility and other epidemiological factors, possibly including recovery from symptom expression and virus infection. Recovery (defined as the emergence of asymptomatic plants from buds on planted symptomatic stalks) and the impact of mosaic on yield components were evaluated in two sugarcane cultivars, HoCP 09-804 and L 10-147. Recovery varied between the two cultivars. Across two experiments, L 10-147 had a higher frequency of recovery (range 9.4 to 19.8%) than HoCP 09-804 (range 0.9 to 2.3%). A reverse-transcription PCR assay did not detect SrMV in 96.5% of 143 L 10-147 leaf samples and 83.3% of 6 HoCP 09-804 leaf samples collected from recovered plants. When comparing symptomatic and asymptomatic plantings, mosaic reduced cane and sucrose yield in HoCP 09-804 but not L 10-147, suggesting a possible association between recovery and tolerance to virus infection.

Sugarcane Mosaic Distribution, Incidence, Increase, and Spatial Pattern in Louisiana.

Sugarcane mosaic is a historically important disease in Louisiana currently caused by sorghum mosaic virus (SrMV). Successful breeding for resistance reduced the disease to low incidence in commercial cultivars. However, mosaic was detected in experimental clone evaluations at multiple locations, leading to uncertainty concerning the current distribution and incidence in the state. Field surveys were conducted from 2016 to 2018 in breeding program yield trials and experimental clone seed cane increase fields. Mosaic symptomatic plants were observed in a newly released cultivar, HoCP 09-804, in three of five production areas, with incidences ranging from 0 to 10%. Mosaic also was observed in nine additional experimental clones. Single leaf samples were tested for SrMV using reverse transcription PCR. All symptomatic samples and a low percentage (0.3%) of asymptomatic samples tested positive for SrMV, confirming that it continues to be the causal species. Runs analysis detected aggregation of infected plants within at least 70% of rows in 94% of surveyed fields. The spatial pattern and geographical distribution of disease incidence suggested that infected seed cane was the source of the disease. Surveys conducted in the same fields of HoCP 09-804 through two subsequent crops detected disease incidence increases in some fields and decreases in the others in first ratoon, but observed incidence was lower compared with plant cane in all fields in second ratoon. The results indicated that disease increase owing to aphid transmission did not occur under the prevailing conditions.

"Turning a Blind Eye to Ratoon Stunting Disease of Sugarcane in Australia" May Be Putting It Too Strongly Without A Lot More Evidence.

A recent Feature article, "Turning a Blind Eye to Ratoon Stunting Disease of Sugarcane in Australia" by Dr. Anthony J. Young, claims "The potential RSD plays a significant, industry-wide role in reduced yields and crop deterioration in Australia has been widely overlooked." As a result, "the industry has exhibited what amounts to an ideological attitude, repeatedly claiming the disease is economically managed." These statements are the basis for the provocative title of the article. Dr. Young presents very elaborately constructed arguments that conclude RSD is likely to be more widespread than realized, is causing significant yield losses and loss of varieties, and is the unrecognized cause of multiple yield decline problems. His overall contention is that the RSD situation has been mismanaged to the detriment of the industry. Allegations such as these should be supported by well documented, direct evidence. Are they supported by solid evidence?

Evaluation of Resistance to Leaf Scald by Quantitative PCR of Xanthomonas albilineans in Sugarcane.

Leaf scald, caused by Xanthomonas albilineans, is a major sugarcane disease controlled primarily with host resistance. Because visual evaluation can be uncertain due to erratic symptom expression, a reliable resistance screening method is needed. A quantitative polymerase chain reaction (qPCR) with potential for resistance screening was used to compare bacterial populations in 31 clones at different times after inoculation, and the correlation with the visual symptom rating method was determined. Comparisons of bacterial populations quantified by qPCR and visual symptom severity ratings in systemically infected leaves showed variable results, with the highest correlation at 8 weeks after inoculation. To measure consistency, the correlation was determined among three different field experiments for data obtained with the same method at different times after inoculation. The qPCR assay was more consistent among experiments compared with visual symptom rating at 8 weeks after inoculation. Susceptible check cultivars always had high bacterial populations but the severe inoculation resulted in moderate to high bacterial populations in two of three resistant checks in some experiments. The results suggest that qPCR can provide an improved method to evaluate resistance to leaf scald in sugarcane; however, multiple experiments will be needed to accurately determine clone resistance levels.

Screening for Resistance to Sugarcane Brown Rust With Controlled-conditions Inoculation.

Breeding for resistance is the primary control measure for brown rust of sugarcane. Resistance screening utilizing natural infection symptom severity ratings provides erratic results. Therefore, a method accomplishing infection and disease expression under controlled conditions was evaluated to determine whether it could provide accurate resistance ratings for seedlings and clones with known and unknown reactions. Seedlings from crosses between parents with different levels of resistance were inoculated with increasing concentrations of urediniospores. Inoculum concentration affected disease severity and the frequency of resistant progeny in crosses. Brown rust resistance is a heritable trait; however, parental reaction was not a consistent determinant of progeny distribution across resistance rating categories. These results suggest that seedling inoculation may be misleading for the evaluation of brown rust resistance. Clone resistance reactions could not be reliably determined for susceptible clones in single inoculations. Ratings for controlled-conditions inoculation and field natural infection severity were not correlated. Multiple inoculations under controlled conditions accurately identified resistant and susceptible clones, with severe infection resulting from any single inoculation indicating susceptibility. Therefore, controlled-conditions inoculation has the potential to be useful in limited studies to characterize parents in a recurrent selection program and for basic studies of resistance to brown rust.

Variability in Puccinia melanocephala Pathogenicity and Resistance in Sugarcane Cultivars.

Brown rust, caused by Puccinia melanocephala, is an important disease of sugarcane worldwide, controlled primarily with host plant resistance. Disease response shifts from resistant to susceptible have been repeatedly observed for cultivars. However, information is limited concerning pathogen variability related to host reactions. To evaluate variability in the pathogen population and characterize resistance responses in different host genotypes, seven cultivars were inoculated with four urediniospore collections from three cultivars. Greenhouse-grown plants were inoculated under controlled conditions favorable for infection and disease development. Severity assessed as leaf area occupied by lesions, lesion density, and lesion size was determined and compared. Three cultivars that shifted from resistance to high susceptibility while under cultivation exhibited differential disease severity when inoculated with spore collections from two of the respective cultivars. Two cultivars exhibited consistent moderate to high levels of quantitative resistance against all spore collections and two cultivars, including one with the Bru1 resistance gene, were highly resistant to all collections. Differential reactions were best revealed by assessing percent leaf area. Pathogenic variability related to host genotype was confirmed, and quantitative resistance was detected that could be useful to improve breeding and selection for effective, durable resistance to brown rust.

Detection and Quantification of Xanthomonas albilineans by qPCR and Potential Characterization of Sugarcane Resistance to Leaf Scald.

Leaf scald is an important disease of sugarcane with erratic symptom expression. Latency represents a threat to germplasm exchange, and erratic symptom development makes accurate evaluation of disease resistance during breeding and selection problematic. Real-time quantitative polymerase chain reaction (qPCR) assays for Xanthomonas albilineans, the causal agent of leaf scald, were developed and evaluated for the sensitive, specific detection and quantification of the pathogen. Assays with SYBR Green primers and TaqMan probe and primers derived from the albicidin toxin biosynthesis gene cluster efficiently and reproducibly amplified X. albilineans. Detection was more sensitive with qPCR compared with conventional PCR. Assays were specific for X. albilineans and sap extracts did not inhibit the qPCR reaction. Leaf-scald-resistant and -susceptible cultivars were distinguished by infection incidence, disease severity, and X. albilineans population determined by SYBR Green qPCR in both greenhouse and field experiments. Populations of X. albilineans varied in different tissues. Differences were the greatest within tissues in resistant cultivars, and bacterial populations in systemically infected, young, not yet fully emerged leaves exhibited the greatest differences between resistant and susceptible cultivars. The results demonstrate that qPCR is a highly sensitive method for the detection of X. albilineans that could provide a reliable method for leaf scald resistance screening.

First Report of Orange Rust Caused by Puccinia kuehnii in Sugarcane in Louisiana.

In June 2012, lesions typical of rust were observed on sugarcane cultivar Ho 05-961 (a complex hybrid of Saccharum L. spp.) on a farm near Schriever, Louisiana. Incidence and severity of disease symptoms were low. Two types of pustules were observed on leaves of the infected plants. One pustule type was reddish-brown in color turning brown with age, characteristic of brown rust which has been observed in Louisiana since 1979 (2). The other pustule type was orange and did not turn brown with age. Urediniospore samples from the two pustule types were collected. The morphology of the urediniospores from the reddish-brown pustules was consistent with that described for Puccinia melanocephala Syd. & Syd., the fungus that causes brown rust of sugarcane, while the morphology of the urediniospores from the orange pustules was consistent with those described for P. kuehnii E.J. Butler, the causal organism of orange rust of sugarcane (3). Telia and teliospores were not observed. The identity of the two species of Puccinia causing the brown and orange rust lesions was verified using the species-specific quantitative PCR assays (1). Two DNA samples extracted from the pustules identified as P. kuehnii were independently subjected to PCR amplification using primers Pk1F and Pk1R (1) to yield a product from the rDNA that was then bidirectionally sequenced using the same primers. The resulting 480-nt sequences were identical to each other, and a BLAST search of GenBank revealed 100% identity to 19 previously reported isolates of P. kuehnii but not more than 89% similarity to any isolate of P. melanocephala (4). To our knowledge, this is the first report of orange rust in Louisiana. In the 4 months following the detection of orange rust, observations of the disease have been limited to Ho 05-961. Seed cane increase plots of this newly released cultivar were surveyed, and orange rust symptoms and urediniospores were detected in 17 of 38 (45%) fields. The incidence and severity of the disease remained low, and the distribution appeared to be limited to the southern portion of the Louisiana sugarcane production area. References: (1) N. C. Glynn et al. Plant Pathol. 59:703, 2010. (2) H. Koike. Plant Dis. 64:226, 1980. (3) C. C. Ryan et al. Page 189 in: Diseases of Sugarcane: Major Diseases. C. Ricaud et al., eds. Elsevier, Amsterdam, 1989. (4) E. V. Virtudazo et al. Mycoscience 42:447, 2001.

Effect of Brown Rust on Yield of Sugarcane in Louisiana.

Brown rust, caused by Puccinia melanocephala, can cause severe epidemics in susceptible sugarcane cultivars during spring and early summer in Louisiana. The effect of the disease on yield was evaluated in field experiments conducted during three growing seasons. A mixture of three fungicides-azoxystrobin, propiconazole, and tebuconazole-applied biweekly during the spring epidemic period kept brown rust severity low (<5%), and plants protected by fungicide applications throughout the epidemic provided an estimate of attainable yield for comparison with plants naturally infected with rust. A combined analysis over three seasons estimated brown rust caused reductions of 16 and 14% in cane tonnage and total amount of sucrose produced, respectively, in cv. LCP 85-384. The greatest reduction in total sucrose yield of 22% resulted from the epidemic of longest duration, and stalk weight was negatively correlated with rust severity. Comparisons of the yields obtained from plots in which brown rust was controlled early versus late in the epidemic suggested that the impact of the disease is greatest from the middle to late epidemic period when stem elongation has begun.

Temporal Increase and Spatial Distribution of Sugarcane Yellow Leaf and Infestations of the Aphid Vector, Melanaphis sacchari.

Yellow leaf, caused by Sugarcane yellow leaf virus (ScYLV), is a potentially important disease of sugarcane first found in Louisiana during 1996. A survey during 2002 determined that ScYLV infection was present in all sugarcane-production areas of Louisiana. Virus was detected in 48% of 42 fields, and incidence averaged 15% in these fields. Disease progress curves determined in four fields during two growing seasons indicated that the greatest temporal increase of virus infection occurred during late spring and early summer and coincided with the initial infestation and increase of the virus vector, the sugarcane aphid (Melanaphis sacchari). Aphid infestations in the experimental fields during 2002 and 2003 ranged from 1.2 to 33.0 and 1.0 to 4.2 aphids per leaf, respectively. Final disease incidences of 2.9, 5.2, and 5.2% were recorded in three fields planted with virus-free seed-cane. Distribution of ScYLV infections and aphids evaluated with spatial autocorrelation analysis indicated that ScYLV and its aphid vector both exhibited a predominantly random spatial distribution, with occasional aggregation. The low incidence and rates of disease increase observed, despite the widespread occurrence of potential vectors, suggest that inoculum pressure remains low in Louisiana. Therefore, it may be possible to keep yellow leaf at low levels by planting virus-free seed-cane.

Protoporphyrinogen oxidase inhibitor herbicide effects on pythium root rot of sugarcane, pythium species, and the soil microbial community.

ABSTRACT The effects of three protoporphyrinogen oxidase inhibitor herbicides, azafenidin, flumioxazin, and sulfentrazone, on Pythium root rot of sugarcane and the soil microbial community were evaluated in greenhouse experiments. Herbicides were applied as foliar and soil treatments. There were no consistent effects on plant growth or disease parameters. However, some herbicide treatments affected the relative frequency of isolation of Pythium spp. from roots and reduced colonization by the pathogenic species Pythium arrhenomanes. A comparison of sole carbon source utilization profiles indicated that soil-applied herbicides altered the functional diversity of the soil microbial community, with some variation depending on herbicide used. All three herbicides inhibited the in vitro mycelial growth of P. arrhenomanes, P. aphanidermatum, and P. ultimum. Active ingredients were less inhibitory than formulated product for azafenidin and flumioxazin but not for sulfentrazone.

Infectivity Titration for Assessing Resistance to Leaf Scald Among Sugarcane Cultivars.

Greenhouse experiments were conducted to determine potential of infectivity titration to evaluate resistance of sugarcane to leaf scald disease caused by Xanthomonas albilineans. In two experiments, single-bud cuttings were inoculated with suspensions containing 101, 105, or 108 CFU/ml of X. albilineans. The occurrence of symptoms was recorded every 15 days from 45 to 210 days after inoculation. At the final evaluation date, leaf vascular sap was plated onto selective medium to detect latent infections. ED50 (log10 of the bacterial concentration required to infect 50% of inoculated plants) was estimated for each cultivar based on probit analysis of cumulative infection frequency. Frequency of infected plants varied among inoculum doses and cultivars and resulted in ED50 values ranging from 3.0 to 12.3 and 3.1 to 9.8 in the first and second experiments, respectively. Good agreement between experiments was observed for ED50 values of individual cultivars. Differences in ED50 among cultivars agreed with field observations of natural disease incidence. Cultivar responses to leaf scald were compared based on the cumulative frequencies of death and recovery in symptomatic plants, and the frequencies of symptomatic plants observed at different evaluation dates for plants inoculated with 108 CFU/ml of X. albilineans. Good agreement between ED50 values and these responses was observed. Greenhouse inoculation tests using infectivity titration or just one inoculum concentration could provide an alternative to field tests for the assessment of sugarcane resistance to leaf scald.

Distribution of plant-parasitic nematodes on sugarcane in louisiana and efficacy of nematicides.

A survey conducted from May 1995 through August 1998 revealed diverse nematode communities in Louisiana sugarcane fields. High populations of Mesocriconema, Paratrichodorus, Pratylenchus, and Tylenchorhynchus were widespread in nine sugarcane production parishes. Comparisons of plant cane and ratoon sugarcane crops indicated that nematode community levels increase significantly in successive ratoon crops. Nematicide trials evaluated the efficacy of aldicarb, ethoprop, and phorate against indigenous nematode populations. Aldicarb consistently increased the number of millable stalks, cane tonnage, and yield of sucrose in soils with a high sand content. Yield increases were concomitant with reductions in the density of the nematode community shortly after planting and at harvest. In soils with a higher clay content, the chemicals were less effective in controlling nematode populations and, as a result, yield increases were minimal.

Spread and Increase of Ratoon Stunting Disease of Sugarcane and Comparison of Disease Detection Methods.

The spread and increase of ratoon stunting disease (RSD) resulting from two mechanical harvests were compared in eight sugarcane cultivars at two locations. RSD spread and increase were detected in the ratoon crops grown after each harvest and varied among cultivars and locations. Disease spread and increase were greater in plants grown from stalks collected at the first harvest than in the first ratoon growth from the harvested field. RSD infection was determined using five disease detection methods: alkaline-induced metaxylem autofluorescence; microscopic examination of xylem sap; and dot blot, evaporative-binding, and tissue blot enzyme immunoassays. The tissue blot enzyme immunoassay was the most accurate RSD detection method. The dot blot and evaporative-binding enzyme immunoassays were the least sensitive for detection of RSD-infected stalks, and alkaline-induced metaxylem autofluorescence was least accurate for correct identification of noninfected stalks. The results indicate that disease spread and increase are variable even among cultivars susceptible to yield loss due to RSD, and the greatest threat of disease spread and increase occurs at planting.

Organic Material Soil Amendment Effects on Root Rot and Sugarcane Growth and Characterization of the Materials.

Soil amendment with different organic materials was evaluated in greenhouse experiments for effects on root rot and growth of sugarcane. Materials included composts prepared from cotton gin trash, cottonwood bark, mixed hardwood bark, municipal solid waste, and municipal yard waste; municipal biosolids; and a sugar mill by-product, filterpress cake. Field soil, steam-treated field soil, and steam-treated soil infested with Pythium arrhenomanes were amended with nonsterile or steam-treated organic materials. A metalaxyl fungicide treatment was included for comparison. When added in nonsterile form, cotton gin trash compost, filterpress cake, and biosolids suppressed disease and increased plant growth in field soil and soil infested with P. arrhenomanes, but this ability was reduced after steam treatment. Bark composts were capable of suppressing root rot and increasing plant growth in field soil and Pythium-infested soil when added in either nonsterile or steam-treated forms. Plant growth in steam-treated soil was not promoted by nonsterile or steam-treated materials. Disease suppression provided by organic materials resulted in plant growth increases generally lower than those resulting from metalaxyl treatment in steam-treated soil infested with P. arrhenomanes, but some amendments resulted in growth increases comparable to those obtained with the metalaxyl treatment in field soil. Municipal waste composts had no effect or were detrimental to sugarcane growth. Differences in microbial community composition and chemical properties, including N content, C:N ratio, and other mineral nutrient levels, distinguished organic materials that may suppress disease and promote plant growth by different mechanisms. Microbial activity level of a material was an indicator of potential for disease suppression. The study results suggest that the severity of root rot in sugarcane may be reduced by amending soil with some organic materials.

Herbicide Effects on Sugarcane Growth, Pythium Root Rot, and Pythium arrhenomanes.

ABSTRACT Six herbicides were evaluated for their effects on Pythium root rot and growth of sugarcane in greenhouse experiments and on in vitro mycelial growth rate of Pythium arrhenomanes. Pendimethalin and atrazine were most inhibitory to mycelial growth, but neither reduced root rot severity. Asulam, atrazine, and metribuzin were not phytotoxic to sugarcane and did not affect root rot symptom severity in clay loam or silt loam field soils. Atrazine and metribuzin increased shoot number, and atrazine increased total shoot weight for treated plants in silt loam soil. Glyphosate, pendimethalin, and terbacil were phytotoxic to sugarcane. These herbicides increased root rot severity, but the extent to which growth reductions resulted from increased disease severity or from direct herbicide injury was not clear. Adverse effects on plant growth and root rot severity were greater in clay loam than in silt loam soil. The results suggest that sugarcane injury from some herbicides is compounded by increased severity of root rot.

Effects of Oxygen Deprivation and Pythium Root Rot on Sugarcane Red Rot.

The effects of oxygen deprivation or poor drainage and Pythium root rot on development of red rot, caused by Colletotrichum falcatum, and spring shoot population of sugarcane were evaluated under controlled and field conditions. Detached stalks of five cultivars were exposed to low atmospheric oxygen (0.5 to 2.7%), created by enclosing stalks in sealed chambers through which humidified nitrogen gas was passed for 0, 1, or 2 weeks. Stalks were then inoculated with C. falcatum and maintained for 6 weeks with humidified air flow. Red rot severity, assessed as four disease traits, was not increased by previous oxygen deprivation. In field experiments, inoculation of stalks of three cultivars with C. falcatum before planting resulted in a reduction in shoot populations the following spring. Poor drainage resulted in an additional reduction in shoot populations developing from inoculated stalks. Soil atmospheric oxygen was reduced in the root zone below planted stalks under poor drainage conditions. However, only minor reductions in oxygen were detected in the zone of elevated rows in which planted stalks were located. The detrimental effect of poor drainage on shoot populations from inoculated stalks was alleviated by metalaxyl application. Pythium root rot, caused by Pythium arrhenomanes, reduced the initial root system and growth of shoots in greenhouse experiments. The combination of P. arrhenomanes and C. falcatum inoculation increased dead bud percentage in one of two cultivars and red rot severity for both. The results suggest that spring shoot populations developing from red rot-affected stalks exposed to poor drainage can be reduced by the combined effects of red rot and Pythium root rot.

Effect of Stalk Desiccation on Sugarcane Red Rot.

The effect of drought conditions at planting time on sugarcane red rot, caused by Colletotrichum falcatum, was evaluated in experiments conducted under controlled conditions and in the field. For experiments under controlled conditions, detached and topped mature stalks of five cultivars were inoculated with conidia of C. falcatum, then exposed to a 3-week desiccation treatment, followed by 3 weeks without desiccation, or maintained for 6 weeks without desiccation. Disease severity, assessed as the number of nodes beyond which rot symptoms extended, number of nodes rotted, internode rot severity, and a rot severity index, was increased in five cultivars by exposure to desiccation. However, response of individual cultivars varied for some disease traits assessed. In field experiments, C. falcatum inoculation alone did not reduce spring shoot populations for seven cultivars. The lowest shoot populations occurred in plantings of inoculated stalks exposed to desiccation. Some cultivars were adversely affected by desiccation alone. These results demonstrate that red rot severity can be increased by the occurrence of drought conditions during the initial growth processes of vegetatively propagated sugarcane stalks.

Weed Hosts of the Sugarcane Root Rot Pathogen, Pythium arrhenomanes.

Weeds in the Poaceae and Cyperaceae families prevalent in sugarcane fields were evaluated as potential hosts for the root rot pathogen, Pythium arrhenomanes. In greenhouse studies, bermudagrass, broadleaf signalgrass, browntop panicum, barnyardgrass, large crabgrass, goosegrass, itchgrass, johnsongrass, Italian ryegrass, and purple nutsedge became infected when grown in steam-treated soil infested with P. arrhenomanes. However, the extent of root colonization, symptom severity, and growth reductions varied among species. Symptom severity and root colonization by P. arrhenomanes were less when weeds were grown in sugarcane field soil in the greenhouse than when weeds were grown in Pythium-infested, steam-treated field soil. Levels of root colonization by P. arrhenomanes in both experiments were greatest for johnsongrass and itchgrass and lowest for browntop panicum, goosegrass, and Italian ryegrass. For weeds collected from sugarcane fields, frequencies for colonized plants were moderate to high, but the extent of root colonization by P. arrhenomanes was low for all except johnsongrass. The results indicate that weeds can serve as hosts for P. arrhenomanes and may play roles in the epidemiology of Pythium root rot on sugarcane.