Simulating particle organic matter dispersal beneath Atlantic salmon fish farms using different resuspension approaches.

An accurate representation of the particle organic matter (POM) footprint is necessary in order to effectively predict impacts upon benthic communities and the risk of excessive organic enrichment beneath aquaculture sea-cages. Consequently, bottom-related processes such as particle resuspension must be adequately parametrized and evaluated in the available numerical models. We implemented two approaches to model POM resuspension in a Lagrangian particle tracking model and compared their influence on footprint extension and gradients of depositional flux against a no-resuspension scenario. We performed simulations in both exposed and protected aquaculture locations, and at different stages of the Atlantic Salmon (Salmo salar) production cycle in Norway. Our results indicate that the use of sediment-dependent thresholds for resuspension has the potential to regulate the high levels of erosion produced when selecting a low critical value in constant-threshold approaches, particularly in dynamic environments with mixed sediment types.

Sea trout adapt their migratory behaviour in response to high salmon lice concentrations.

Sea trout face growth-mortality trade-offs when entering the sea to feed. Salmon lice epizootics resulting from aquaculture have shifted these trade-offs, as salmon lice might both increase mortality and reduce growth of sea trout. We studied mortality and behavioural adaptations of wild sea trout in a large-scale experiment with acoustic telemetry in an aquaculture intensive area that was fallowed (emptied of fish) synchronically biannually, creating large variations in salmon lice concentrations. We tagged 310 wild sea trout during 3 years, and gave half of the individuals a prophylaxis against further salmon lice infestation. There was no difference in survival among years or between treatments. In years of high infestation pressure, however, sea trout remained closer to the river outlet, used freshwater (FW) habitats for longer periods and returned earlier to the river than in the low infestation year. This indicates that sea trout adapt their migratory behaviour by actively choosing FW refuges from salmon lice to escape from immediate mortality risk. Nevertheless, simulations show that these adaptations can lead to lost growth opportunities. Reduced growth can increase long-term mortality of sea trout due to prolonged exposure to size-dependent predation risk, lead to lower fecundity and, ultimately, reduce the likelihood of sea migration.

Targeted gene sequencing and whole-exome sequencing in autopsied fetuses with prenatally diagnosed kidney anomalies.

Identification of fetal kidney anomalies invites questions about underlying causes and recurrence risk in future pregnancies. We therefore investigated the diagnostic yield of next-generation sequencing in fetuses with bilateral kidney anomalies and the correlation between disrupted genes and fetal phenotypes. Fetuses with bilateral kidney anomalies were screened using an in-house-designed kidney-gene panel. In families where candidate variants were not identified, whole-exome sequencing was performed. Genes uncovered by this analysis were added to our kidney panel. We identified likely deleterious variants in 11 of 56 (20%) families. The kidney-gene analysis revealed likely deleterious variants in known kidney developmental genes in 6 fetuses and TMEM67 variants in 2 unrelated fetuses. Kidney histology was similar in the latter 2 fetuses-presenting a distinct prenatal form of nephronophthisis. Exome sequencing identified ROBO1 variants in one family and a GREB1L variant in another family. GREB1L and ROBO1 were added to our kidney-gene panel and additional variants were identified. Next-generation sequencing substantially contributes to identifying causes of fetal kidney anomalies. Genetic causes may be supported by histological examination of the kidneys. This is the first time that SLIT-ROBO signaling is implicated in human bilateral kidney agenesis.

The role of Coxsackievirus A16 in a case of sudden unexplained death in an infant - A SUDI case.

The Coxsackievirus A16 (CV-A16) is one of the main pathogens causing hand-foot-and-mouth disease in young children. It is a low-virulence virus rarely involved in serious illness. It is seen sporadically or in outbreaks all over the world. We report a case of sudden unexplained death in infancy, SUDI, in a 3 and 1/2 months old infant, in which a thorough post mortem investigation pointed at a fatal infection with CV-A16 as the most likely cause of death. Only five cases of fatal CV-A16 infection have been published and none of these presented as sudden death. The fatal cases involved two infants, two young children and an elderly man. Post mortem, pre-autopsy CT-scan and C-reactive protein analysis allowed for an autopsy procedure targeted at a microbiological cause of death. The case illustrates the usefulness of supplementary testing during autopsy.

The wild flora biodiversity in pesticide free bufferzones along old hedgerows.

The natural field margin ecotone from the field border and into a cropped field hosts a diversity of plant species. In conventional cropped fields, biodiversity suffers from fertilizer and pesticide application. In our study at Danish conventional spring-barley fields, we laid out bufferzones with no pesticide application spraying after sowing, with the widths: 24, 12, 6 and 4 m (and control) to the field edge hedgerow. Through one season: plant species number, biodiversity and evenness for each bufferzone at the distances: 18, 9, 5, 2 and 0 m from the hedgerow were significantly affected by distance to the hedge and by width of bufferzone. The bufferzones affected: species number (total of 92 weed species), species diversity (1.27 to 0.44) and species evenness index (0.63 to 0.87), and revealed that the bufferzone of 24 m gave the largest improvementof the field margin for plants. Decreasing the bufferzone widths provided smaller biodiversity and larger evenness of plants at distances larger than the buffer width: the distance at which diversity (Shannons) was reduced by half the difference between hedge- and field diversity was 1.2, 3.1, 6.7, 10.8 and 10.9 m in bufferwidth treatments of 0, 4, 6, 12 and 24 m; likewise, the half-way distance for Smiths and Wilsons evenness index was 1.2, 1.7, 5.4, 14.0 and 30.2 m in the bufferwidth treatments of 0, 4, 6,12 and 24 m. Based on modelled diversity and evenness indexes a positive effect of buffer was evident from 6 m bufferzone. The average diversity over the distances from 0 to 18 m was 0.66, 0.75, 0.98, 1.14 and 1.11 in bufferwidth treatments of 0, 4, 6, 12 and 24 m and the average evenness over the distances from 0 to 18 m was 0.82, 0.80, 0.74, 0.66 and 0.63, in bufferwidth treatments of 0, 4, 6, 12 and 24 m. Furthermore, the accumulated number of species revealed that a bufferzone width of at least 6 m was needed to significantly increase the species richness at all distances between 2 and 18 m. At 18 m distance, the accumulated number of species was 37.1, 39.7, 41.2, 42.4 and 42.7 in bufferwidth treatments of 0, 4, 6, 12 and 24 m.

Evaluation of a standardized protocol for processing adrenal tumor samples: preparation for a European adrenal tumor bank.

Storage and tissue handling of surgical tumor specimen have been recognized as critical steps that can potentially affect reproducibility and comparability of molecular endpoints between laboratories. In the preparation of adrenal tumor tissue banking, three different protocols that simulate warm ischemia upon tumor removal (protocol I), thawing and refreezing cycles (protocol II), as well as storage of vital tumor samples (protocol III) were applied. For the first two protocols, samples were subdivided and either snap frozen or treated with a RNA preserving agent (RPA) while in protocol III different storage media were compared. Following these procedures, recovery and integrity of DNA, RNA, and protein by means of pulsed field electrophoresis, long-range PCR, real-time PCR, immunoblot, and immunohistochemistry (protocol I and II) as well as cell viability and steroidogenic capacity (protocol III) were investigated. While DNA integrity was not influenced by different treatment modalities, expression levels of adrenal marker genes were more affected in samples after snap freezing in comparison to RPA pretreatment. Moreover, storage at room temperature before and after freezing could be demonstrated to decrease the relative amount of protein phosphorylation (ERK) and enzymatic activity (succinate cytochrome c reductase) while overall protein levels were not significantly affected. Similarly, morphological or immunohistochemical evaluation was comparable between groups. For primary cell cultures generated after storage of tumor samples similar rates of viability were observable while steroid output varied between the groups. Overall, on the basis of the presented endpoints standardized operational procedures can be defined for a proposed European adrenal tumor biobank.

Root uptake of lead by Norway spruce grown on 210Pb spiked soils.

The root uptake of lead (Pb) by trees and the transfer of Pb by leaf litter deposition to the forest floor were investigated through a pot experiment with Norway spruce. Natural Pb and radio isotopic lead (210Pb) were determined in needles and twigs and in the pot soil spiked with 210Pb. Calculations of the specific activity in plant material and in the supporting pot soil showed that less than 2% of the Pb content of needles and twigs originates from root uptake and approximately 98% are deposited from the atmosphere. Atmospheric Pb has declined by a factor of 7 from 1980 to 2007 but is still a major pathway of Pb to vegetation and topsoils. The conclusion from the experiment is that the internal circulation of Pb through root uptake, translocation and litterfall, gives an insignificant input of Pb to the forest floor compared to atmospheric deposition.

Atmospheric heavy metal deposition accumulated in rural forest soils of southern Scandinavia.

Thirty-three years of measurements of atmospheric heavy metal (HM) deposition (bulk precipitation) in Denmark combined with European emission inventories form the basis for calculating a 50-year accumulated atmospheric input to a remote forest plantation on the island of Laesoe. Soil samples taken in two depths, 0-10 cm and 10-20 cm, at eight forest sites at the island were used to determine the increase in HM content in the eolian deposited top soils of the plantation. Concentrations of lead (Pb), cadmium (Cd), copper (Cu), zinc (Zn), vanadium (V), nickel (Ni) and arsenic (As) were determined in atmospheric deposition and in soils. The accumulated atmospheric deposition is of the same magnitude as the increase of these metals in the top soil.

[Spermiogram findings following antegrade sclerosing of a varicocele]. / Spermiogrammbefunde nach antegrader Varikozelensklerosierung.

Antegrade scrotal sclerotherapy is an established method for treatment of varicocele. Semen analysis of 103 patients at least 6 months postoperatively showed an significant increase of progressive motility from 36.5 +/- 20.7% to 51.7 +/- 20%. Evaluation of sperm density and morphology showed a significant increase too. In 79% we found an improvement of sperm density, in 63% of normal morphology and in 71% of progressive motility. There was no correlation between preoperative size of varicocele to postoperative findings in semen analysis. In 42% (n = 38) of inability to conceive the partners became pregnant. These results show that antegrade scrotal sclerotherapy is equivalent to other kinds of operative treatment for varicocele with regard to improvement of fertility parameters.

Heavy metal uptake in transplanted and in situ yarrow (Achillea millefolium) and epiphytic cryptogams at rural, urban and industrial localities in Denmark.

Yarrow (Achillea millefolium L.) and 3 cryptogamic epiphytes were collected from and transplanted to 10 various locations in Denmark. The spatial and temporal variation in Pb and Cd concentrations of yarrow leaves and the cryptogams were determined. The physical structure of the plant parts, the mobility differences between the metals and the atmospheric fallout of metals at the growing site were believed to be important for the metal uptake. It was concluded, that yarrow leaves give a measure of the relative variation in deposition rates to surface of higher plants when collected at the end of a growth season, and that the geographic variation was revealed with similar accuracy by yarrow and the cryptogams.