Intense bloom of the diatom Hemidiscus hardmanianus (Greville) in relation to water quality and plankton communities in Tuticorin coast, Gulf of Mannar, India.

The present study reports a dense bloom of the marine-diatom Hemidiscus hardmanianus observed off the Tuticorin coast in the Gulf of Mannar (GoM), India. The surface water discoloration (pale green) was observed during a coastal survey conducted in the initial period of the northeast monsoon (October 2018). The bloom extended over an area of approximately 5 km2 around the Tuticorin harbor. Distribution and relative abundance of the phytoplankton and zooplankton species together with the water quality and Chlorophyll-a were studied in the area of bloom. H. hardmanianus density was maximum (10.57 × 104 cells L-1) in the bloom site, which was almost 97% of the total phytoplankton population. The present report is the first record of H. hardmanianus bloom in the Gulf of Mannar. The chain-forming diatom Biddulphia biddulphiana was also observed in strong numbers (802 and 432 cells L-1), which has been rarely reported from the Indian coastal waters.

De novo assembly and annotation of the whole genomic analysis of Vibrio campbellii RT-1 strain, from infected shrimp: Litopenaeus vannamei.

OBJECTIVES: This study aimed to sequence the whole genome of Vibrio campbellii RT-1 strain. METHODS: V. campbellii strain was isolated from an infected shrimp, Litopenaeus vannamei collected from aquaculture ponds, India (12.1899° N, 79.9249° E). The whole genome sequencing (WGS) was performed using the Illumina Hiseq 2500 platform and assembled de novo using SPAdes and Velvet optimiser. Furthermore, the gene prediction and annotation were performed by a rapid prokaryotic genome tool-Prokka. RESULTS: The genome of V. campbellii RT-1 strain has one circular chromosome with 6327218 bp long. V. campbellii RT-1 strain contains 5787 predicted genes with an average of 45% GC content. A total of 86 known genes associated with pathogenicity were identified and 28 genes were found to be responsible for virulence factors. Furthermore, 1112 unigenes were subjected to Gene Ontology (GO) terms, and 4895 predicted proteins were annotated with Clusters of orthologous (COGs) functional groups. CONCLUSIONS: The phylogenetic position of V. campbellii RT-1 strain was established through whole genome sequencing and genomic tools which provides a strong platform to further study on genomic alterations and phenotype of V. campbellii.

Ultrasonic-assisted green synthesis of flower like silver nanocolloids using marine sponge extract and its effect on oral biofilm bacteria and oral cancer cell lines.

The knowhow followed for synthesis, characterization and application of nanomaterials has become an important branch of nanoscience. The use of marine sponges for the synthesis of metal nanoparticles is still in the budding level of current nanobiotechnology. This paper reports a single step one pot biosynthesis utilizing marine sponge (Haliclona exigua) extract as a reducing agent by means of a conventional ultrasonic bath on the formation and growth of flower like silver nanocolloids. These silver nanocolloids were characterized through UV visible spectroscopy, High Resolution Transmission Electron Microscope, Fourier Transform Infrared spectroscopy and X-ray Diffractometer. Further, antibacterial activity and antiproliferative activity were done against oral biofilm bacteria and oral cancer cell lines for the biosynthesized flower like silver nanocolloids. Water soluble organic amines were responsible for the syntheses of nanomaterials which have a size range from 100 to 120 nm. An average size of 9.1 mm zone of inhibition was recorded with 10.0 µg of silver nanocolloids against oral biofilm bacteria. The estimated half maximal inhibitory concentration value for flower like silver nanocolloids was 0.6 µg/ml for oral cancer cell lines.

Interaction of free-living marine nematodes in the artificial mangrove environment (Southeast Coast of India).

Free-living marine nematode diversity was analyzed between Avicennia marina and Rhizophora mucronata mangrove covers of the Vellar Estuary (southeast coast of India). A total of 4,976 specimens of free-living marine nematodes were collected in 56 species. Comparatively, a higher species richness was obtained for A. marina (52 species) than for R. mucronata (44 species), whereas 40 species commonly existed in both mangrove covers. A higher density of nematodes was found in sediments of sandy nature, whereas there was lower total organic carbon compared to silt/clay composition; epigrowth feeders were dominant over the other feeding groups based on organic enrichment in surface sediments. Principal component analysis clearly explained the relationship between the environmental parameters of various months. Higher R values of analysis of similarities revealed significant differences in nematode assemblages between months, and it was quite evident by non-metric multidimensional scaling. Diversity indices showed higher values in the dry months. RELATE analysis explained serial changes in nematode species composition between months, and a relationship between biotic and abiotic variables was clarified using the BIO-ENV procedure. Viscosia spp., Metachromadora spp., Theristus spp., and Sphaerolaimus spp. were candidate species of A. marina leaf interaction by observation.

Diversity of macrofauna from continental shelf off Singarayakonda (southeast coast of India).

The present study was undertaken to study the benthic productivity of shelf region off Krishna River mouth. Standing stock of macrobenthos and its distribution were studied. Sampling was done onboard FORV Sagar Sampada from depths as 30, 50, 75, 100, 150 and 200 m using Smith-McIntyre grab having a bite area of 0.2 m2. After identification, data were treated using statistical package PRIMER v6. The nature of the sediment was medium sand up to 150 m depth and fine silt at 200 m. The benthic biomass (0.2977-3.1091 mg 0.2 m(-2)), abundance (58-289 nos. 0.2 m(-2) and number of species (12-48) decreased with increase in depth. The total number of species recorded was 69. Species estimators showed the possibility of collecting 129 species (Chao1) with intense sampling. Polychaetes formed the largest group with 40 species followed by molluscs (15 species) and crustaceans (14 species). The Spearman rank correlation (Rho) value (0.513) which was significant at 1.1% showed gradual change in species composition with increase in depth. The Pi value (3.78) comparing the similarity of benthos at 200 m depth with those of other depths (30, 150, 100, 75 and 50 m) showed significant differences (0.6%). Matching of biotic variables with that of environment showed the influence of dissolved oxygen on the distribution of macrobenthos (Rho 0.757). Intense sampling should be done to record all the species as shown by species estimators besides studying shelf productivity off other rivers and relating it with nutrient discharge and other environmental factors including sediment nature.

Silver nanoparticles with anti microfouling effect: a study against marine biofilm forming bacteria.

Marine biofilms are the preliminary entities due to attachment of bacteria on surfaces immersed in seawater and aggregated in a hydrated polymeric matrix. Such biofilms or microfouling play a major role in the succession of marine biofouling which attracts the larvae of barnacles, mussels and other sessile invertebrates. Different approaches have been used to prevent micro and macrofouling on marine industrial settings. Silver nanoparticles are renowned for their influential antimicrobial activity. On this back drop the present work is focused on the effect of biosynthesized silver nanoparticles against marine biofilm forming bacterial species. Aspects such as circular zone of inhibition, quantification of biofilm formation and bacterial growth were assessed for bacterial species isolated from the marine biofilm in the presence and sabsence of silver nanoparticles. The size of the circular zone formation was directly proportional to the concentration of biosynthesized silver nanoparticles that reflected the antimicrobial effect. The crystal violet staining on biofilm formation and its optical density revealed the effect on biofilm inhibition. The growth of bacteria in the presence and absence of silver nanoparticles concluded the bactericidal ability of the silver nanoparticles. However, further research is required to examine these factors.

Length-weight relationship and condition factor of Liza subviridis (Valenciennes, 1836) of Parangipettai waters, southeast coast of India.

Determination of Length-weight Relationship (LWR) of any commercially important fish is crucial to validate the wild stock level, to predict their wellbeing in the natural habitat and for various sustainable fishery management practices. Liza subviridis (Valenciennes) is noted to be highly abundant along the coast of Parangipettai, South east coast of India. Hence, the present study was aimed to establish Length-weight relationship and condition factor of Greenback mullet, Liza subviridis (Valenciennes) occurring in Vellar estuary, Parangipettai (lat. 11 degrees 30' N, long. 79 degrees 46' E) using least square method. To determine the actual relationship between length and weight of L. subviridis exponent coefficient or equilibrium constant (b) and relative condition factor (Kn) analysis were adopted. The females were found to be heavier than males at similar length. The equilibrium constant 'b' was found to be 2.7106 in males and 2.8927 in females. The corresponding parabolic representation for male was W = 0.0462L(2.7106) and for female W = 0.0382L(2.8927). The equilibrium constant did not obey the cube law as it deviated significantly from 3 in the case of males. The relative condition factor around 1 and little over it revealed the well-being of L. subviridis in Parangipettai waters.

Length-weight relationship of Mugil cephalus (Linnaeus 1758) in Vellar estuary, southeast coast of India.

A detailed study on the length weight relationship of Mugil cephalus in Vellar estuary was conducted between January 2004 and December 2005. Statistical tests such as regression coefficient 'b' and 'a' tests were performed to compare the b values of males and females from the hypothetical value of 3. The b value of male (2.7658) differed significantly from the hypothetical value of 3 (t = -2.8586 < 0.05), the b value of female (2.8586) did not differ significantly from the hypothetical value (t = -1.0158 > 0.05). Values of both males and females were less than 3 which proved the negative allometry growth pattern.

16S rDNA sequence analysis of culturable marine biofilm forming bacteria from a ship's hull.

Marine bacteria from the hull of a ship in the form of biofilms or microfouling were isolated, cultured, and identified by phylogenetic analysis using 16S rDNA sequences. With an average length of 946 bp, all the 16 sequences were classified using the Ribosomal database project (RDP) and were submitted to the National Center for Biotechnology Information. Phylogenetic analysis using 16S rDNA sequences indicated that the 16 strains belonged to the Firmicutes (IK-MB6 Exiguobacterium aurantiacum, IK-MB7 Exiguobacterium arabatum, IK-MB8 Exiguobacterium arabatum, IK-MB9 Jeotgalibacillus alimentarius, IK-MB10 Bacillus megaterium, IK-MB11 Bacillus pumilus, IK-MB12 Bacillus pumilus, IK-MB13 Bacillus pumilus, IK-MB14 Bacillus megaterium), High GC, Gram-positive bacteria (IK-MB2 Micrococcus luteus, IK-MB5 Micrococcus luteus, IK-MB16 Arthrobacter mysorens), G-Proteobacteria (IK-MB3 Halomonas aquamarina, IK-MB15 Halotalea alkalilenta), CFB group bacteria (IK-MB1 Myroides odoratimimus), and Enterobacteria (IK-MB4 Proteus mirabilis). Among the 16 strains, representatives of the Firmicutes were dominant (56.25%) compared to the high GC, Gram-positive bacteria (18.75%), G-Proteobacteria (12.5%), CFB group bacteria (6.25%), and Enterobacteria (6.25%). Analysis revealed that majority of marine species found in marine biofilm are of anthropogenic origin.

Use of benthic biodiversity for assessing the impact of shrimp farming on environment.

An attempt was made to find out the impact of shrimp farm discharges on benthic diversity in the discharge point of a shrimp farm. The duration of the study was one culture period right from stocking to harvest. The results revealed that the values of environmental entities were in the safe levels. As regards nutrients, maximum value of TOC and phosphorus were recorded in the sample collected after harvest and minimum in the sample collected during culture. BIO-ENV method revealed that nitrogen, sediment salinity and TOC were manifested as best variable combination explaining faunal distribution. Polychaetes are the dominant group (50%) with 13 species followed by crustaceans (32%) with 10 species, gastropods (10%) with 2 species and bivalves (8%) with 3 species. The faunal density was found to vary in relation to months as observed in the samples which were collected during various seasons in the other areas of estuary. In line with this, diversity values were also paralleled to the faunal density. In a nut shell, the study revealed no negative impact of shrimp farming to the estuarine benthic biota.

Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate

Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea.

Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate.

Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea.

Role of probiotics on the environment of shrimp pond.

Recent disease outbreak in shrimp farming caused mainly by bacteria, virus, fungi or a combination of these etiologic agents is attributed to disturbance in the environment of pond. To combat this, different antibiotics and chemicals are being used which are reported to be not environment friendly. Of late, a new and unique biotechnological product called "Probiotics " is being used widely by all the shrimp farmers worldwide, which is found to be more effective and environmentally safe also. In the present study 2 probiotics were used in a small 0.7 ha shrimp farm near Pattukottai in Tamil Nadu State for one culture period for the management of pond environment and also the gut ecology of Penaeus monodon. The environmental parameters analysed were within the acceptable limits. It was evident from the results that the production was better in the experimental pond where the probiotics were used. The biological parameters such as the average body weight, FCR and total harvest achieved were better in the experimental pond than the control pond, all due to congenial environment, which obtained in the former mainly due to the use of probiotics.

Toxicity of leaf extract of yellow oleander Thevetia nerifolia on Tilapia.

The usefulness of leaf extract as an ideal source of 'piscicide' in shrimp farming is described Leaf toxins are safe, eco-friendly and biodegradable. The fish Tilapia, Oreochromis mossambicus was exposed to the extract and the percentage of mortality at the end of 24,48, 72 and 96 hrs was recorded. The respective toxic range of aqueous, alcohol and acetone extracts of 24 hr LC50 and 96 hr LC50 values were found to be respectively 1118.79-330.30, 699.24-129.02 and 749.95-347.23 mg dry extract/litre for Oreochromis mossambicus. The LC50 values observed in different time periods in the fish exposed to aqueous extract were relatively high compared to the values obtained in acetone and alcohol extracts. Use of leaf extract, as piscicide in aquaculture farms is considered advantageous when viewed against the backdrop of using persistent chemicals.